Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47262 * 2 1 4 4 N 1.28436 * 125.18862 * 84.98226 * 3 2 1 5 5 C 1.30830 * 110.98231 * 179.97438 * 4 3 2 6 6 C 1.39804 * 107.87618 * 0.02562 * 5 4 3 7 7 Cl 1.73603 * 127.33494 * 179.97438 * 6 5 4 8 8 C 1.36741 * 125.18615 * 264.95549 * 3 2 1 9 9 C 1.47026 * 126.90804 * 359.97438 * 8 3 2 10 10 O 1.21646 * 119.99828 * 99.20507 * 9 8 3 11 11 N 1.34775 * 120.00134 * 279.21092 * 9 8 3 12 12 C 1.47424 * 125.64950 * 5.25234 * 11 9 8 13 13 C 1.54685 * 104.94230 * 204.07639 * 12 11 9 14 14 C 1.55152 * 101.67733 * 323.27470 * 13 12 11 15 15 C 1.47028 * 125.64873 * 185.56126 * 11 9 8 16 16 H 1.08998 * 109.88035 * 59.48181 * 15 11 9 17 17 C 1.53002 * 109.87846 * 298.31943 * 15 11 9 18 18 N 1.46500 * 109.46714 * 176.50776 * 17 15 11 19 19 C 1.46498 * 119.99847 * 275.44933 * 18 17 15 20 20 C 1.36935 * 120.00413 * 95.44920 * 18 17 15 21 21 H 1.08007 * 119.99849 * 3.38617 * 20 18 17 22 22 C 1.38813 * 120.00770 * 183.38528 * 20 18 17 23 23 N 1.31619 * 119.99305 * 5.45788 * 22 20 18 24 24 Si 1.86790 * 120.00442 * 185.45719 * 22 20 18 25 25 H 1.48501 * 109.47246 * 60.00271 * 24 22 20 26 26 H 1.48508 * 109.47184 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47462 * 300.00143 * 24 22 20 28 28 H 1.08991 * 109.47290 * 304.99163 * 1 2 3 29 29 H 1.09006 * 109.46751 * 64.98583 * 1 2 3 30 30 H 1.08995 * 109.47297 * 184.97825 * 1 2 3 31 31 H 1.08996 * 109.47466 * 239.99651 * 2 1 3 32 32 H 1.09002 * 109.46397 * 119.99747 * 2 1 3 33 33 H 1.08002 * 126.06202 * 179.97438 * 5 4 3 34 34 H 1.09007 * 110.36241 * 323.00615 * 12 11 9 35 35 H 1.09000 * 110.36627 * 85.32251 * 12 11 9 36 36 H 1.08999 * 111.10255 * 205.10644 * 13 12 11 37 37 H 1.09002 * 110.85092 * 81.33263 * 13 12 11 38 38 H 1.09002 * 110.72435 * 276.97419 * 14 13 12 39 39 H 1.09001 * 110.72566 * 153.70559 * 14 13 12 40 40 H 1.08997 * 109.47340 * 296.50558 * 17 15 11 41 41 H 1.08999 * 109.47393 * 56.50589 * 17 15 11 42 42 H 1.08998 * 109.47723 * 0.31532 * 19 18 17 43 43 H 1.09005 * 109.47067 * 120.31820 * 19 18 17 44 44 H 1.09003 * 109.47088 * 240.31340 * 19 18 17 45 45 H 0.97006 * 119.99849 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1786 2.1096 1.0456 5 6 2.6283 3.2958 0.7258 6 6 2.7730 3.3396 -0.6640 7 17 3.3340 4.6738 -1.6227 8 6 2.3737 2.0913 -1.1132 9 6 2.3395 1.6240 -2.5068 10 8 1.4063 1.9253 -3.2266 11 7 3.3420 0.8616 -2.9867 12 6 4.4719 0.3336 -2.2007 13 6 5.5985 0.0938 -3.2332 14 6 4.7953 -0.4001 -4.4654 15 6 3.4932 0.4242 -4.3823 16 1 3.5616 1.2925 -5.0376 17 6 2.3006 -0.4445 -4.7874 18 7 2.4183 -0.8062 -6.2021 19 6 1.9333 0.1118 -7.2357 20 6 2.9816 -2.0024 -6.5585 21 1 3.2893 -2.7029 -5.7961 22 6 3.1573 -2.3148 -7.8995 23 7 2.8828 -1.4201 -8.8250 24 14 3.7833 -4.0048 -8.3907 25 1 2.8414 -5.0432 -7.9009 26 1 3.8823 -4.0853 -9.8702 27 1 5.1232 -4.2298 -7.7914 28 1 -0.3633 0.5893 0.8418 29 1 -0.3633 0.4346 -0.9313 30 1 -0.3633 -1.0237 0.0892 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.8481 4.0991 1.4135 34 1 4.7889 1.0628 -1.4551 35 1 4.1943 -0.6048 -1.7206 36 1 6.2921 -0.6722 -2.8864 37 1 6.1244 1.0221 -3.4562 38 1 4.5826 -1.4661 -4.3852 39 1 5.3319 -0.1813 -5.3886 40 1 2.2879 -1.3499 -4.1807 41 1 1.3762 0.1112 -4.6301 42 1 1.5263 1.0067 -6.7649 43 1 2.7586 0.3894 -7.8914 44 1 1.1541 -0.3778 -7.8198 45 1 3.0052 -1.6385 -9.7622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505432167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = 59.279061 kcal Electronic energy + Delta-G solvation = -28696.492734 eV Core-core repulsion = 24777.436735 eV Total energy + Delta-G solvation = -3919.055999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.75406 -41.16959 -38.76251 -37.69397 -37.20515 -35.59259 -33.63033 -32.94773 -31.64035 -30.84638 -30.48717 -28.03026 -26.84083 -25.66046 -24.88645 -23.30166 -22.89752 -22.52614 -21.43051 -20.16014 -18.94864 -18.85893 -17.89915 -17.20620 -17.04993 -16.64860 -16.40358 -16.12089 -15.47199 -15.36739 -15.25617 -15.10050 -14.61746 -14.55427 -14.36308 -14.05706 -13.91841 -13.73040 -13.41574 -13.15226 -12.91240 -12.86647 -12.80829 -12.72869 -12.61329 -12.38572 -12.30559 -12.14239 -12.07587 -11.88045 -11.62735 -11.61762 -11.53259 -11.24316 -10.64732 -10.39462 -9.92792 -9.88569 -8.91005 -7.67623 -5.15997 0.29185 0.66270 1.13975 1.38788 1.50178 1.52588 1.56146 1.59307 1.93062 2.55119 3.10702 3.40343 3.40752 3.57038 3.78855 3.82748 3.86991 3.88716 4.00818 4.11582 4.17801 4.22398 4.29363 4.42538 4.43389 4.57592 4.63867 4.71670 4.77081 4.85564 4.90286 5.05058 5.07202 5.08204 5.09076 5.13259 5.37392 5.41435 5.48256 5.52730 5.64222 5.82615 6.29175 6.32436 6.78218 6.82306 7.18484 7.88863 8.31906 9.29338 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.003348 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.905635 B = 8361.776294 C = 8751.537983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.257 5.257 4 N -0.272 5.272 5 C 0.030 3.970 6 C -0.128 4.128 7 Cl -0.025 7.025 8 C -0.014 4.014 9 C 0.601 3.399 10 O -0.555 6.555 11 N -0.593 5.593 12 C 0.096 3.904 13 C -0.121 4.121 14 C -0.101 4.101 15 C 0.124 3.876 16 H 0.041 0.959 17 C 0.155 3.845 18 N -0.617 5.617 19 C 0.187 3.813 20 C -0.241 4.241 21 H 0.088 0.912 22 C -0.064 4.064 23 N -0.950 5.950 24 Si 0.972 3.028 25 H -0.281 1.281 26 H -0.302 1.302 27 H -0.270 1.270 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.226 0.774 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.032 0.968 42 H 0.002 0.998 43 H 0.036 0.964 44 H 0.001 0.999 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.217 4.615 23.471 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.046 5.046 4 N -0.102 5.102 5 C -0.148 4.148 6 C -0.166 4.166 7 Cl 0.003 6.997 8 C -0.145 4.145 9 C 0.386 3.614 10 O -0.432 6.432 11 N -0.326 5.326 12 C -0.025 4.025 13 C -0.159 4.159 14 C -0.139 4.139 15 C 0.019 3.981 16 H 0.059 0.941 17 C 0.027 3.973 18 N -0.341 5.341 19 C 0.042 3.958 20 C -0.370 4.370 21 H 0.105 0.895 22 C -0.256 4.256 23 N -0.600 5.600 24 Si 0.801 3.199 25 H -0.208 1.208 26 H -0.229 1.229 27 H -0.195 1.195 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.242 0.758 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.333 4.054 23.766 24.339 hybrid contribution 0.209 0.234 -1.973 1.998 sum 3.542 4.288 21.793 22.491 Atomic orbital electron populations 1.22152 0.92833 1.05210 1.02254 1.22451 0.96757 0.74939 1.06983 1.46029 1.44661 1.12962 1.00937 1.73226 1.19219 1.04545 1.13236 1.23983 1.02608 0.96077 0.92108 1.21432 1.11661 0.89976 0.93536 1.98358 1.87560 1.42826 1.70961 1.21028 1.09990 0.94335 0.89097 1.16725 0.81701 0.78031 0.84948 1.90869 1.35044 1.57657 1.59623 1.48670 1.24233 1.48556 1.11092 1.22583 0.85435 0.99802 0.94689 1.22775 0.96587 1.02935 0.93567 1.22390 0.93104 0.99671 0.98761 1.22391 0.98752 0.96699 0.80275 0.94082 1.21048 0.95198 0.96357 0.84676 1.44158 1.70367 1.18927 1.00630 1.20701 0.96882 0.88813 0.89366 1.19615 1.32272 0.93454 0.91672 0.89470 1.25650 1.02416 1.01414 0.96153 1.70413 1.56005 1.34044 0.99525 0.85250 0.78605 0.79833 0.76214 1.20755 1.22852 1.19549 0.91183 0.94196 0.87215 0.88239 0.84276 0.75779 0.89683 0.89081 0.86841 0.90551 0.90458 0.91856 0.92498 0.94938 0.97902 0.94558 0.98077 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.11 1.67 6.91 86.38 0.60 2.27 16 3 N -0.26 -5.49 3.35 -334.60 -1.12 -6.61 16 4 N -0.27 -5.56 11.89 -57.07 -0.68 -6.24 16 5 C 0.03 0.56 12.04 85.22 1.03 1.59 16 6 C -0.13 -3.11 6.89 22.72 0.16 -2.95 16 7 Cl -0.03 -0.63 29.24 -2.72 -0.08 -0.71 16 8 C -0.01 -0.36 5.57 40.76 0.23 -0.14 16 9 C 0.60 19.56 6.77 86.55 0.59 20.14 16 10 O -0.56 -23.20 15.90 -4.18 -0.07 -23.26 16 11 N -0.59 -17.43 3.07 -792.76 -2.43 -19.86 16 12 C 0.10 1.96 6.72 86.78 0.58 2.54 16 13 C -0.12 -2.47 7.07 31.91 0.23 -2.24 16 14 C -0.10 -3.10 5.73 31.78 0.18 -2.92 16 15 C 0.12 4.46 3.16 45.34 0.14 4.61 16 16 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 17 C 0.15 6.50 5.05 86.38 0.44 6.94 16 18 N -0.62 -31.29 2.81 -726.93 -2.04 -33.33 16 19 C 0.19 10.11 9.01 127.77 1.15 11.26 16 20 C -0.24 -12.59 8.81 84.03 0.74 -11.85 16 21 H 0.09 4.22 7.44 -2.91 -0.02 4.20 16 22 C -0.06 -3.49 5.43 84.86 0.46 -3.03 16 23 N -0.95 -56.12 9.49 21.65 0.21 -55.91 16 24 Si 0.97 43.95 29.56 68.60 2.03 45.98 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.61 7.65 -2.39 -0.02 1.59 16 32 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.23 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.08 1.55 7.61 -2.38 -0.02 1.53 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.46 7.04 -2.39 -0.02 2.44 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 41 H 0.03 1.49 6.47 -2.39 -0.02 1.47 16 42 H 0.00 0.12 7.87 -2.39 -0.02 0.11 16 43 H 0.04 2.11 6.61 -2.38 -0.02 2.09 16 44 H 0.00 0.04 7.45 -2.39 -0.02 0.02 16 45 H 0.24 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -71.03 381.68 4.05 -66.98 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.99 Total: 8.69 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 7.25 Total: 24.28 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -6.07 Total: -121.95 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.07 Total: -23.26 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -71.03 4.05 -66.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505432167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.254 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds