Wall clock time and date at job start Sat Apr 11 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00412 * 2 1 4 4 H 1.08000 * 120.00278 * 202.21386 * 3 2 1 5 5 C 1.38816 * 120.00032 * 22.21471 * 3 2 1 6 6 N 1.31622 * 119.99723 * 10.67816 * 5 3 2 7 7 Si 1.86801 * 120.00319 * 190.67754 * 5 3 2 8 8 H 1.48494 * 109.47023 * 94.98486 * 7 5 3 9 9 H 1.48492 * 109.47356 * 214.98920 * 7 5 3 10 10 H 1.48502 * 109.46733 * 334.98899 * 7 5 3 11 11 C 1.46499 * 119.99764 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47123 * 95.46833 * 11 2 1 13 13 H 1.09003 * 109.99369 * 53.80826 * 12 11 2 14 14 C 1.54320 * 109.88692 * 292.71093 * 12 11 2 15 15 C 1.55149 * 102.94677 * 218.38847 * 14 12 11 16 16 C 1.54702 * 101.67643 * 35.33450 * 15 14 12 17 17 N 1.47023 * 109.88518 * 174.90185 * 12 11 2 18 18 C 1.34783 * 125.64893 * 298.32603 * 17 12 11 19 19 O 1.21284 * 119.99784 * 4.71762 * 18 17 12 20 20 C 1.50694 * 120.00094 * 184.72097 * 18 17 12 21 21 C 1.52998 * 109.46986 * 185.47759 * 20 18 17 22 22 N 1.46505 * 109.47135 * 175.49689 * 21 20 18 23 23 C 1.35042 * 126.03828 * 125.30947 * 22 21 20 24 24 C 1.35370 * 107.72672 * 180.18226 * 23 22 21 25 25 Cl 1.73605 * 126.04650 * 179.83952 * 24 23 22 26 26 C 1.39930 * 107.91067 * 359.57468 * 24 23 22 27 27 N 1.30855 * 108.20951 * 0.26244 * 26 24 23 28 28 H 1.08995 * 109.47178 * 274.28463 * 1 2 3 29 29 H 1.09005 * 109.46469 * 34.28457 * 1 2 3 30 30 H 1.08997 * 109.47309 * 154.28185 * 1 2 3 31 31 H 0.96999 * 119.99935 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47362 * 335.46763 * 11 2 1 33 33 H 1.09001 * 109.47615 * 215.47289 * 11 2 1 34 34 H 1.09003 * 110.71560 * 336.75503 * 14 12 11 35 35 H 1.08999 * 110.71940 * 100.02354 * 14 12 11 36 36 H 1.08995 * 111.00707 * 153.57294 * 15 14 12 37 37 H 1.08995 * 111.00703 * 277.42843 * 15 14 12 38 38 H 1.08997 * 110.38839 * 204.36383 * 16 15 14 39 39 H 1.08999 * 110.23416 * 82.11423 * 16 15 14 40 40 H 1.08998 * 109.47537 * 65.47718 * 20 18 17 41 41 H 1.09005 * 109.46876 * 305.47604 * 20 18 17 42 42 H 1.09002 * 109.47732 * 55.49701 * 21 20 18 43 43 H 1.09003 * 109.47471 * 295.49608 * 21 20 18 44 44 H 1.07998 * 126.13736 * 0.02562 * 23 22 21 45 45 H 1.07994 * 125.89614 * 180.24119 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1697 1.2205 -0.3536 5 6 1.5331 2.3434 0.4545 6 7 0.3757 2.2714 1.0773 7 14 2.3456 4.0033 0.1824 8 1 1.8037 4.6230 -1.0535 9 1 2.0668 4.8871 1.3426 10 1 3.8124 3.8191 0.0416 11 6 2.1975 -1.2687 0.0006 12 6 2.5715 -1.6423 -1.4352 13 1 3.1068 -0.8185 -1.9072 14 6 1.2971 -1.9705 -2.2412 15 6 1.7441 -3.1623 -3.1282 16 6 2.7121 -3.9112 -2.1819 17 7 3.4109 -2.8494 -1.4353 18 6 4.6215 -2.9644 -0.8540 19 8 5.0673 -2.0488 -0.1953 20 6 5.4210 -4.2306 -1.0225 21 6 6.6818 -4.1564 -0.1589 22 7 7.4040 -5.4285 -0.2387 23 6 8.6981 -5.5866 -0.5909 24 6 8.9791 -6.9101 -0.5446 25 17 10.5091 -7.6430 -0.9130 26 6 7.8200 -7.5822 -0.1413 27 7 6.8757 -6.6951 0.0422 28 1 -0.3633 0.0768 1.0247 29 1 -0.3632 0.8492 -0.5789 30 1 -0.3634 -0.9258 -0.4459 31 1 -0.0554 3.0804 1.3946 32 1 1.5695 -2.0507 0.4276 33 1 3.1040 -1.1648 0.5969 34 1 0.4861 -2.2676 -1.5762 35 1 1.0009 -1.1213 -2.8569 36 1 0.8943 -3.7897 -3.3970 37 1 2.2664 -2.8124 -4.0186 38 1 3.4245 -4.5021 -2.7575 39 1 2.1524 -4.5501 -1.4988 40 1 5.7037 -4.3453 -2.0689 41 1 4.8185 -5.0847 -0.7132 42 1 6.4021 -3.9618 0.8765 43 1 7.3224 -3.3516 -0.5195 44 1 9.3849 -4.7989 -0.8633 45 1 7.7215 -8.6490 -0.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505465305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:18 Heat of formation + Delta-G solvation = 67.753017 kcal Electronic energy + Delta-G solvation = -27134.695603 eV Core-core repulsion = 23216.007062 eV Total energy + Delta-G solvation = -3918.688541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61219 -40.07130 -37.59425 -36.72869 -35.28981 -34.48136 -31.92088 -31.34746 -30.79216 -29.70698 -28.84757 -26.06297 -25.29865 -24.94627 -22.72528 -21.56180 -21.29557 -21.05573 -20.37424 -18.71747 -17.92274 -16.77321 -16.60756 -16.20372 -16.06158 -15.20800 -14.95611 -14.70722 -14.64184 -14.20566 -13.70792 -13.65169 -13.54561 -13.39928 -13.16355 -12.95895 -12.69719 -12.56358 -12.06917 -11.97718 -11.88241 -11.77187 -11.55381 -11.19035 -11.05402 -10.87213 -10.81899 -10.78676 -10.67231 -10.36535 -10.14092 -9.93676 -9.84495 -9.81623 -9.51851 -8.76468 -8.60683 -8.37666 -6.68090 -5.66704 -3.12817 1.38472 1.60656 2.24363 2.43651 2.70752 3.10468 3.41444 3.48054 3.50779 4.14013 4.35004 4.44985 4.54235 4.56691 4.64215 4.67718 4.93788 4.99786 5.06122 5.11856 5.22473 5.41223 5.42704 5.44529 5.51698 5.55013 5.63748 5.73201 5.84323 5.99682 6.00614 6.20203 6.22351 6.45677 6.46356 6.51699 6.72330 6.82596 7.05791 7.18506 7.42287 7.68957 7.77309 7.88774 8.26954 8.46261 9.30674 9.92706 10.40676 11.38378 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.002214 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.024285 B =12644.172669 C =13697.435018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.598 5.598 3 C -0.247 4.247 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.912 5.912 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.145 3.855 12 C 0.115 3.885 13 H 0.076 0.924 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.099 3.901 17 N -0.610 5.610 18 C 0.528 3.472 19 O -0.530 6.530 20 C -0.148 4.148 21 C 0.149 3.851 22 N -0.360 5.360 23 C 0.077 3.923 24 C -0.193 4.193 25 Cl -0.046 7.046 26 C 0.062 3.938 27 N -0.280 5.280 28 H 0.026 0.974 29 H 0.044 0.956 30 H -0.003 1.003 31 H 0.251 0.749 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.184 0.816 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 -20.833 -8.370 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.321 5.321 3 C -0.377 4.377 4 H 0.087 0.913 5 C -0.199 4.199 6 N -0.558 5.558 7 Si 0.735 3.265 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.017 3.983 12 C 0.010 3.990 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.174 4.174 16 C -0.024 4.024 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.407 6.407 20 C -0.189 4.189 21 C 0.028 3.972 22 N -0.142 5.142 23 C -0.071 4.071 24 C -0.232 4.232 25 Cl -0.018 7.018 26 C -0.124 4.124 27 N -0.101 5.101 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.015 0.985 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.201 0.799 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 11.097 -19.903 -7.569 24.012 hybrid contribution 1.327 0.696 -0.486 1.575 sum 12.423 -19.207 -8.056 24.252 Atomic orbital electron populations 1.20856 0.82547 0.95387 0.99242 1.43836 1.01759 1.00472 1.85999 1.19236 0.97621 0.85299 1.35506 0.91311 1.25019 0.97674 0.98490 0.98670 1.70077 1.17496 1.26860 1.41343 0.86221 0.78962 0.84170 0.77169 1.21652 1.21791 1.20423 1.21012 0.96672 0.88465 0.92159 1.22661 0.89808 0.85533 1.00972 0.90619 1.22641 0.97209 0.97669 0.97825 1.22769 0.98824 0.97911 0.97909 1.22280 0.95219 0.90676 0.94252 1.48649 1.17444 1.14849 1.53528 1.19794 0.80596 0.88545 0.79556 1.90790 1.69425 1.41224 1.39246 1.21851 0.96597 0.98332 1.02112 1.21611 0.93252 0.79314 1.02999 1.48653 1.07866 1.06798 1.50841 1.22326 0.87507 0.97368 0.99920 1.20778 0.90459 0.92440 1.19493 1.98328 1.27440 1.82256 1.93803 1.23888 0.89305 1.00288 0.98960 1.77496 1.22163 0.87784 1.22633 0.95533 0.93683 0.98488 0.93887 0.94676 0.92174 0.90554 0.90119 0.90178 0.91006 0.91185 0.91342 0.88503 0.87662 0.88023 0.87160 0.79894 0.79257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.61 59.85 0.52 4.52 16 2 N -0.60 -15.16 2.80 -181.12 -0.51 -15.67 16 3 C -0.25 -6.95 9.67 -15.06 -0.15 -7.10 16 4 H 0.07 1.96 7.85 -52.49 -0.41 1.55 16 5 C 0.00 -0.03 5.14 -17.43 -0.09 -0.12 16 6 N -0.91 -27.02 10.54 55.49 0.58 -26.44 16 7 Si 0.90 22.47 29.57 -169.99 -5.03 17.44 16 8 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 C 0.15 3.13 5.09 -4.04 -0.02 3.11 16 12 C 0.12 2.02 3.11 -66.96 -0.21 1.81 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.12 -1.67 5.72 -24.90 -0.14 -1.82 16 15 C -0.14 -1.41 7.07 -24.70 -0.17 -1.59 16 16 C 0.10 1.02 6.69 -2.64 -0.02 1.01 16 17 N -0.61 -8.71 3.07 -163.15 -0.50 -9.21 16 18 C 0.53 7.62 7.66 -10.99 -0.08 7.53 16 19 O -0.53 -9.88 14.79 5.55 0.08 -9.80 16 20 C -0.15 -1.48 4.79 -27.89 -0.13 -1.61 16 21 C 0.15 1.44 5.81 -4.04 -0.02 1.41 16 22 N -0.36 -3.50 3.68 -61.32 -0.23 -3.72 16 23 C 0.08 0.64 11.43 -17.16 -0.20 0.45 16 24 C -0.19 -1.69 6.65 -39.97 -0.27 -1.96 16 25 Cl -0.05 -0.37 29.30 -51.86 -1.52 -1.89 16 26 C 0.06 0.56 12.02 -17.33 -0.21 0.35 16 27 N -0.28 -3.01 12.35 30.64 0.38 -2.63 16 28 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 29 H 0.04 1.18 7.16 -51.93 -0.37 0.81 16 30 H 0.00 -0.07 6.21 -51.93 -0.32 -0.39 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 33 H 0.06 1.45 6.51 -51.93 -0.34 1.11 16 34 H 0.08 1.14 6.27 -51.93 -0.33 0.82 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.57 7.61 -51.93 -0.40 0.17 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.82 8.13 -51.93 -0.42 0.40 16 41 H 0.11 1.03 8.02 -51.93 -0.42 0.61 16 42 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 43 H 0.11 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.19 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -33.49 381.25 -8.92 -42.40 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.73 Total: -2.23 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.20 Total: 6.00 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.27 Total: -57.67 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.49 -8.92 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505465305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.154 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds