Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00412 * 2 1 4 4 H 1.08000 * 120.00278 * 202.21386 * 3 2 1 5 5 C 1.38816 * 120.00032 * 22.21471 * 3 2 1 6 6 N 1.31622 * 119.99723 * 10.67816 * 5 3 2 7 7 Si 1.86801 * 120.00319 * 190.67754 * 5 3 2 8 8 H 1.48494 * 109.47023 * 94.98486 * 7 5 3 9 9 H 1.48492 * 109.47356 * 214.98920 * 7 5 3 10 10 H 1.48502 * 109.46733 * 334.98899 * 7 5 3 11 11 C 1.46499 * 119.99764 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47123 * 95.46833 * 11 2 1 13 13 H 1.09003 * 109.99369 * 53.80826 * 12 11 2 14 14 C 1.54320 * 109.88692 * 292.71093 * 12 11 2 15 15 C 1.55149 * 102.94677 * 218.38847 * 14 12 11 16 16 C 1.54702 * 101.67643 * 35.33450 * 15 14 12 17 17 N 1.47023 * 109.88518 * 174.90185 * 12 11 2 18 18 C 1.34783 * 125.64893 * 298.32603 * 17 12 11 19 19 O 1.21284 * 119.99784 * 4.71762 * 18 17 12 20 20 C 1.50694 * 120.00094 * 184.72097 * 18 17 12 21 21 C 1.52998 * 109.46986 * 185.47759 * 20 18 17 22 22 N 1.46505 * 109.47135 * 175.49689 * 21 20 18 23 23 C 1.35042 * 126.03828 * 125.30947 * 22 21 20 24 24 C 1.35370 * 107.72672 * 180.18226 * 23 22 21 25 25 Cl 1.73605 * 126.04650 * 179.83952 * 24 23 22 26 26 C 1.39930 * 107.91067 * 359.57468 * 24 23 22 27 27 N 1.30855 * 108.20951 * 0.26244 * 26 24 23 28 28 H 1.08995 * 109.47178 * 274.28463 * 1 2 3 29 29 H 1.09005 * 109.46469 * 34.28457 * 1 2 3 30 30 H 1.08997 * 109.47309 * 154.28185 * 1 2 3 31 31 H 0.96999 * 119.99935 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47362 * 335.46763 * 11 2 1 33 33 H 1.09001 * 109.47615 * 215.47289 * 11 2 1 34 34 H 1.09003 * 110.71560 * 336.75503 * 14 12 11 35 35 H 1.08999 * 110.71940 * 100.02354 * 14 12 11 36 36 H 1.08995 * 111.00707 * 153.57294 * 15 14 12 37 37 H 1.08995 * 111.00703 * 277.42843 * 15 14 12 38 38 H 1.08997 * 110.38839 * 204.36383 * 16 15 14 39 39 H 1.08999 * 110.23416 * 82.11423 * 16 15 14 40 40 H 1.08998 * 109.47537 * 65.47718 * 20 18 17 41 41 H 1.09005 * 109.46876 * 305.47604 * 20 18 17 42 42 H 1.09002 * 109.47732 * 55.49701 * 21 20 18 43 43 H 1.09003 * 109.47471 * 295.49608 * 21 20 18 44 44 H 1.07998 * 126.13736 * 0.02562 * 23 22 21 45 45 H 1.07994 * 125.89614 * 180.24119 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1697 1.2205 -0.3536 5 6 1.5331 2.3434 0.4545 6 7 0.3757 2.2714 1.0773 7 14 2.3456 4.0033 0.1824 8 1 1.8037 4.6230 -1.0535 9 1 2.0668 4.8871 1.3426 10 1 3.8124 3.8191 0.0416 11 6 2.1975 -1.2687 0.0006 12 6 2.5715 -1.6423 -1.4352 13 1 3.1068 -0.8185 -1.9072 14 6 1.2971 -1.9705 -2.2412 15 6 1.7441 -3.1623 -3.1282 16 6 2.7121 -3.9112 -2.1819 17 7 3.4109 -2.8494 -1.4353 18 6 4.6215 -2.9644 -0.8540 19 8 5.0673 -2.0488 -0.1953 20 6 5.4210 -4.2306 -1.0225 21 6 6.6818 -4.1564 -0.1589 22 7 7.4040 -5.4285 -0.2387 23 6 8.6981 -5.5866 -0.5909 24 6 8.9791 -6.9101 -0.5446 25 17 10.5091 -7.6430 -0.9130 26 6 7.8200 -7.5822 -0.1413 27 7 6.8757 -6.6951 0.0422 28 1 -0.3633 0.0768 1.0247 29 1 -0.3632 0.8492 -0.5789 30 1 -0.3634 -0.9258 -0.4459 31 1 -0.0554 3.0804 1.3946 32 1 1.5695 -2.0507 0.4276 33 1 3.1040 -1.1648 0.5969 34 1 0.4861 -2.2676 -1.5762 35 1 1.0009 -1.1213 -2.8569 36 1 0.8943 -3.7897 -3.3970 37 1 2.2664 -2.8124 -4.0186 38 1 3.4245 -4.5021 -2.7575 39 1 2.1524 -4.5501 -1.4988 40 1 5.7037 -4.3453 -2.0689 41 1 4.8185 -5.0847 -0.7132 42 1 6.4021 -3.9618 0.8765 43 1 7.3224 -3.3516 -0.5195 44 1 9.3849 -4.7989 -0.8633 45 1 7.7215 -8.6490 -0.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505465305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = 47.350459 kcal Electronic energy + Delta-G solvation = -27135.580324 eV Core-core repulsion = 23216.007062 eV Total energy + Delta-G solvation = -3919.573262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.29410 -41.24502 -38.85150 -37.36437 -37.13399 -35.31387 -33.60632 -32.69379 -31.59363 -30.78329 -30.02668 -28.03615 -26.81857 -25.98613 -23.89932 -22.76558 -22.21923 -22.11021 -21.51862 -19.88112 -18.84912 -18.56902 -17.74294 -17.38802 -16.98147 -16.72399 -16.01654 -15.91522 -15.54603 -15.39907 -15.17784 -15.03117 -14.68869 -14.43866 -14.30166 -14.14128 -13.82303 -13.66565 -13.51755 -13.14030 -12.99220 -12.80434 -12.77293 -12.59508 -12.46121 -12.37456 -12.26816 -12.15135 -12.03412 -11.92392 -11.61091 -11.49335 -11.44794 -10.88714 -10.66550 -10.60098 -9.73449 -9.43249 -8.74986 -7.84892 -5.33640 0.72247 0.92813 1.41917 1.42838 1.52911 1.57896 1.59702 1.73492 2.05278 2.49179 3.27307 3.38954 3.48003 3.65959 3.74964 3.78926 3.84035 3.94559 4.04555 4.06602 4.26953 4.35417 4.36861 4.43455 4.50692 4.60266 4.66993 4.70695 4.76865 4.83667 4.91110 4.99568 5.08143 5.12379 5.17177 5.31508 5.37637 5.42211 5.51496 5.59816 5.72031 5.79050 6.30232 6.51150 6.58570 7.12741 7.15361 7.85251 8.26905 9.17636 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017152 B = 0.002214 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.024285 B =12644.172669 C =13697.435018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.612 5.612 3 C -0.255 4.255 4 H 0.056 0.944 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.968 3.032 8 H -0.281 1.281 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.150 3.850 12 C 0.126 3.874 13 H 0.040 0.960 14 C -0.113 4.113 15 C -0.121 4.121 16 C 0.095 3.905 17 N -0.613 5.613 18 C 0.522 3.478 19 O -0.582 6.582 20 C -0.128 4.128 21 C 0.152 3.848 22 N -0.367 5.367 23 C 0.080 3.920 24 C -0.204 4.204 25 Cl -0.041 7.041 26 C 0.064 3.936 27 N -0.311 5.311 28 H -0.004 1.004 29 H 0.021 0.979 30 H 0.038 0.962 31 H 0.249 0.751 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.209 0.791 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -23.029 -10.333 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.336 5.336 3 C -0.385 4.385 4 H 0.074 0.926 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.207 1.207 9 H -0.218 1.218 10 H -0.201 1.201 11 C 0.023 3.977 12 C 0.020 3.980 13 H 0.058 0.942 14 C -0.151 4.151 15 C -0.159 4.159 16 C -0.026 4.026 17 N -0.346 5.346 18 C 0.312 3.688 19 O -0.462 6.462 20 C -0.168 4.168 21 C 0.031 3.969 22 N -0.148 5.148 23 C -0.068 4.068 24 C -0.242 4.242 25 Cl -0.013 7.013 26 C -0.123 4.123 27 N -0.132 5.132 28 H 0.015 0.985 29 H 0.039 0.961 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.139 0.861 44 H 0.226 0.774 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 11.814 -22.167 -9.567 26.879 hybrid contribution 1.173 1.289 0.160 1.750 sum 12.987 -20.878 -9.407 26.326 Atomic orbital electron populations 1.20596 0.82045 0.96372 0.97304 1.44013 1.02272 1.01050 1.86299 1.19363 0.97360 0.86788 1.35024 0.92567 1.25759 0.98478 1.01719 0.98866 1.70236 1.18626 1.27413 1.42326 0.85234 0.78098 0.79956 0.77097 1.20723 1.21790 1.20097 1.21033 0.94857 0.87224 0.94596 1.22127 0.91595 0.86412 0.97894 0.94213 1.22545 0.95235 0.99321 0.98030 1.22773 0.99845 0.96110 0.97168 1.22598 0.95848 0.89743 0.94425 1.48737 1.17315 1.14758 1.53795 1.20626 0.80587 0.89339 0.78294 1.90770 1.70595 1.43413 1.41432 1.21720 0.95938 0.95533 1.03604 1.21498 0.93558 0.79847 1.01958 1.48596 1.08337 1.06432 1.51440 1.22788 0.87225 0.98060 0.98761 1.20905 0.90735 0.92728 1.19847 1.98331 1.27025 1.82179 1.93780 1.24318 0.88993 1.01184 0.97769 1.77460 1.23309 0.88372 1.24032 0.98526 0.96060 0.94390 0.94193 0.93603 0.95632 0.90751 0.91314 0.87065 0.90246 0.87821 0.89989 0.86002 0.86793 0.89930 0.86123 0.77446 0.77129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.04 8.61 127.77 1.10 10.14 16 2 N -0.61 -32.09 2.80 -726.94 -2.04 -34.13 16 3 C -0.25 -14.89 9.67 84.04 0.81 -14.07 16 4 H 0.06 3.36 7.85 -2.91 -0.02 3.33 16 5 C -0.05 -3.14 5.14 84.86 0.44 -2.70 16 6 N -0.94 -57.17 10.54 21.65 0.23 -56.94 16 7 Si 0.97 47.25 29.57 68.60 2.03 49.28 16 8 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 9 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 C 0.15 6.66 5.09 86.38 0.44 7.10 16 12 C 0.13 4.44 3.11 45.34 0.14 4.58 16 13 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 14 C -0.11 -3.12 5.72 31.78 0.18 -2.93 16 15 C -0.12 -2.07 7.07 31.91 0.23 -1.84 16 16 C 0.10 1.61 6.69 86.78 0.58 2.19 16 17 N -0.61 -16.76 3.07 -788.48 -2.42 -19.17 16 18 C 0.52 14.83 7.66 87.65 0.67 15.50 16 19 O -0.58 -22.53 14.79 -3.04 -0.05 -22.58 16 20 C -0.13 -2.29 4.79 29.85 0.14 -2.15 16 21 C 0.15 2.80 5.81 86.38 0.50 3.30 16 22 N -0.37 -6.52 3.68 -347.92 -1.28 -7.80 16 23 C 0.08 1.17 11.43 83.54 0.95 2.12 16 24 C -0.20 -3.17 6.65 22.02 0.15 -3.02 16 25 Cl -0.04 -0.59 29.30 -2.72 -0.08 -0.67 16 26 C 0.06 1.02 12.02 85.25 1.02 2.05 16 27 N -0.31 -6.17 12.35 -56.98 -0.70 -6.87 16 28 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 29 H 0.02 1.13 7.16 -2.38 -0.02 1.11 16 30 H 0.04 1.54 6.21 -2.39 -0.01 1.53 16 31 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.05 1.89 7.91 -2.39 -0.02 1.87 16 33 H 0.03 1.29 6.51 -2.39 -0.02 1.28 16 34 H 0.07 2.07 6.27 -2.39 -0.01 2.06 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.10 1.14 7.61 -2.39 -0.02 1.13 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.12 1.63 8.13 -2.39 -0.02 1.61 16 41 H 0.11 1.92 8.02 -2.38 -0.02 1.90 16 42 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 43 H 0.12 1.93 8.07 -2.39 -0.02 1.91 16 44 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -76.59 381.25 4.04 -72.55 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 0.99 Total: 6.08 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 7.36 Total: 20.26 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -6.21 Total: -124.92 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.58 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -76.59 4.04 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505465305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.898 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds