Wall clock time and date at job start Sat Apr 11 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34605 * 126.48710 * 2 1 4 4 Cl 1.73600 * 125.43471 * 359.97438 * 3 2 1 5 5 N 1.31018 * 109.12681 * 179.82544 * 3 2 1 6 6 C 1.33302 * 109.70786 * 0.45127 * 5 3 2 7 7 C 1.36679 * 107.82741 * 359.72389 * 6 5 3 8 8 C 1.46663 * 126.83993 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99791 * 352.96675 * 8 7 6 10 10 N 1.34780 * 119.99466 * 172.97914 * 8 7 6 11 11 C 1.46506 * 119.99415 * 184.48481 * 10 8 7 12 12 C 1.53005 * 109.46834 * 297.41434 * 11 10 8 13 13 N 1.46491 * 109.47040 * 302.01310 * 12 11 10 14 14 C 1.36938 * 119.99731 * 185.07729 * 13 12 11 15 15 H 1.08001 * 120.00413 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99947 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99796 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46843 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46907 * 119.99883 * 18 16 14 21 21 H 1.48497 * 109.46945 * 240.00255 * 18 16 14 22 22 C 1.53000 * 109.46884 * 177.41324 * 11 10 8 23 23 C 1.52994 * 109.47313 * 300.00213 * 22 11 10 24 24 C 1.52999 * 109.46876 * 299.99905 * 23 22 11 25 25 C 1.52995 * 109.47418 * 60.00313 * 24 23 22 26 26 C 1.52999 * 109.47267 * 57.41441 * 11 10 8 27 27 H 1.09002 * 109.46958 * 262.25939 * 1 2 3 28 28 H 1.09002 * 109.46645 * 142.26624 * 1 2 3 29 29 H 1.08998 * 109.47119 * 22.26244 * 1 2 3 30 30 H 1.07997 * 126.08719 * 179.72528 * 6 5 3 31 31 H 0.96995 * 120.00355 * 4.47676 * 10 8 7 32 32 H 1.08995 * 109.46672 * 62.02049 * 12 11 10 33 33 H 1.08999 * 109.46648 * 182.01637 * 12 11 10 34 34 H 0.97001 * 120.00334 * 5.08728 * 13 12 11 35 35 H 0.97003 * 119.99783 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46773 * 59.99855 * 22 11 10 37 37 H 1.09002 * 109.47060 * 179.97438 * 22 11 10 38 38 H 1.08999 * 109.47295 * 179.97438 * 23 22 11 39 39 H 1.08993 * 109.47415 * 59.99713 * 23 22 11 40 40 H 1.09002 * 109.47039 * 300.00104 * 24 23 22 41 41 H 1.09006 * 109.47340 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.47593 * 180.02562 * 25 24 23 43 43 H 1.08993 * 109.47240 * 59.99968 * 25 24 23 44 44 H 1.09002 * 109.47039 * 179.97438 * 26 11 10 45 45 H 1.09003 * 109.47489 * 300.00075 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2655 1.0822 0.0000 4 17 1.7268 2.7325 -0.0006 5 7 3.5160 0.6913 0.0038 6 6 3.5706 -0.6406 -0.0036 7 6 2.2877 -1.1120 -0.0061 8 6 1.8671 -2.5170 -0.0144 9 8 2.6947 -3.3990 -0.1488 10 7 0.5641 -2.8311 0.1266 11 6 0.1547 -4.2349 0.2171 12 6 0.5196 -4.9572 -1.0815 13 7 -0.1316 -4.2895 -2.2111 14 6 -0.0351 -4.8218 -3.4691 15 1 0.5207 -5.7340 -3.6285 16 6 -0.6517 -4.1888 -4.5398 17 7 -1.3286 -3.0769 -4.3457 18 14 -0.5195 -4.9145 -6.2560 19 1 0.2904 -6.1582 -6.2064 20 1 -1.8781 -5.2290 -6.7664 21 1 0.1339 -3.9334 -7.1592 22 6 -1.3576 -4.3121 0.4361 23 6 -1.7224 -3.5897 1.7345 24 6 -1.0024 -4.2563 2.9085 25 6 0.5098 -4.1792 2.6896 26 6 0.8747 -4.9015 1.3911 27 1 -0.3633 -0.1384 1.0183 28 1 -0.3633 -0.8128 -0.6290 29 1 -0.3633 0.9510 -0.3893 30 1 4.4687 -1.2404 -0.0069 31 1 -0.1026 -2.1279 0.1684 32 1 1.6005 -4.9332 -1.2191 33 1 0.1830 -5.9926 -1.0282 34 1 -0.6310 -3.4704 -2.0681 35 1 -1.7592 -2.6344 -5.0939 36 1 -1.8704 -3.8371 -0.4003 37 1 -1.6622 -5.3565 0.5029 38 1 -2.7998 -3.6443 1.8903 39 1 -1.4178 -2.5454 1.6672 40 1 -1.3070 -5.3007 2.9757 41 1 -1.2627 -3.7420 3.8337 42 1 1.0228 -4.6545 3.5258 43 1 0.8144 -3.1348 2.6224 44 1 0.5697 -5.9458 1.4586 45 1 1.9521 -4.8466 1.2352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506512258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:27 Heat of formation + Delta-G solvation = 33.118656 kcal Electronic energy + Delta-G solvation = -29160.561036 eV Core-core repulsion = 25240.370637 eV Total energy + Delta-G solvation = -3920.190399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.38207 -40.28768 -37.65912 -37.16485 -34.90492 -34.61643 -33.12916 -31.43489 -30.76681 -29.92580 -29.03587 -27.46276 -25.32980 -23.59241 -23.06983 -22.28211 -21.64137 -20.69392 -20.38788 -19.03482 -17.96576 -17.23793 -16.72064 -16.37792 -15.66161 -15.15686 -14.83073 -14.67575 -14.56586 -14.33954 -13.85832 -13.67708 -13.64532 -13.48947 -13.25990 -13.13605 -12.78859 -12.27918 -12.21908 -12.08502 -11.99282 -11.81074 -11.65562 -11.42337 -11.05019 -10.89957 -10.83384 -10.61854 -10.49826 -10.23361 -10.13481 -10.01612 -9.98230 -9.70240 -9.49154 -8.84648 -8.76451 -8.52125 -6.88637 -5.78918 -3.04383 1.04717 1.17115 2.52855 2.62405 3.27081 3.42947 3.48050 3.49695 3.51259 4.37960 4.42444 4.58466 4.73294 4.78853 4.81267 4.86001 4.97388 5.19789 5.24304 5.26725 5.34717 5.51558 5.57118 5.58064 5.63077 5.66666 5.71923 5.79325 6.04199 6.06664 6.15837 6.23923 6.25823 6.29153 6.33204 6.44782 6.49447 6.51243 6.59610 6.84217 7.04854 7.51662 7.71316 7.73483 8.38827 8.41147 9.52927 10.09819 10.45193 11.44759 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008279 B = 0.004828 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.151370 B = 5797.937878 C = 7737.677526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.428 5.428 3 C 0.259 3.741 4 Cl 0.036 6.964 5 N -0.471 5.471 6 C 0.070 3.930 7 C -0.059 4.059 8 C 0.602 3.398 9 O -0.512 6.512 10 N -0.710 5.710 11 C 0.176 3.824 12 C 0.139 3.861 13 N -0.726 5.726 14 C -0.229 4.229 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.938 5.938 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.293 1.293 21 H -0.293 1.293 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.113 4.113 26 C -0.129 4.129 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.193 0.807 31 H 0.391 0.609 32 H 0.045 0.955 33 H 0.027 0.973 34 H 0.379 0.621 35 H 0.252 0.748 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 6.631 16.705 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.115 5.115 3 C -0.027 4.027 4 Cl 0.064 6.936 5 N -0.193 5.193 6 C -0.084 4.084 7 C -0.175 4.175 8 C 0.387 3.613 9 O -0.387 6.387 10 N -0.365 5.365 11 C 0.091 3.909 12 C 0.011 3.989 13 N -0.370 5.370 14 C -0.360 4.360 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.588 5.588 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.168 4.168 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.210 0.790 31 H 0.230 0.770 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.212 0.788 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.074 6.504 16.495 17.764 hybrid contribution -1.387 0.099 -1.135 1.794 sum -0.312 6.603 15.361 16.723 Atomic orbital electron populations 1.22535 0.75547 1.06793 1.04612 1.45236 1.08009 1.05221 1.53027 1.23173 0.86781 0.84237 1.08492 1.98421 1.88681 1.09375 1.97131 1.70106 1.15973 1.12735 1.20438 1.22596 0.95968 0.89114 1.00695 1.21506 0.91659 0.87395 1.16941 1.16540 0.83020 0.85041 0.76687 1.90803 1.52198 1.46746 1.48943 1.46298 1.07025 1.09063 1.74111 1.20660 0.94046 0.80159 0.96064 1.21139 0.97776 0.94330 0.85655 1.42207 1.62427 1.29325 1.03029 1.19295 1.26183 1.05714 0.84815 0.91192 1.24663 1.00893 0.97693 0.97859 1.69635 1.39504 1.19349 1.30323 0.86127 0.77081 0.78187 0.84918 1.20566 1.21995 1.21995 1.21795 0.94097 1.02388 0.97539 1.21563 0.99934 0.99071 0.95105 1.21548 0.95549 1.00906 0.97583 1.21458 0.95593 1.00649 0.97414 1.21912 1.02554 0.99221 0.93121 0.89085 0.87692 0.87817 0.78987 0.77039 0.93759 0.95486 0.78760 0.93791 0.90091 0.90193 0.91790 0.92877 0.91898 0.92550 0.92318 0.92530 0.91097 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 9.54 59.85 0.57 1.03 16 2 N -0.43 -5.61 3.18 -118.35 -0.38 -5.99 16 3 C 0.26 3.54 8.48 -90.34 -0.77 2.78 16 4 Cl 0.04 0.39 28.59 -51.86 -1.48 -1.09 16 5 N -0.47 -7.22 11.21 -11.49 -0.13 -7.35 16 6 C 0.07 1.06 11.66 -17.48 -0.20 0.85 16 7 C -0.06 -0.91 6.91 -82.10 -0.57 -1.48 16 8 C 0.60 10.07 7.18 -12.86 -0.09 9.98 16 9 O -0.51 -9.91 13.15 5.20 0.07 -9.84 16 10 N -0.71 -10.50 3.42 -48.90 -0.17 -10.66 16 11 C 0.18 2.70 0.32 -131.81 -0.04 2.66 16 12 C 0.14 2.83 4.97 -4.04 -0.02 2.81 16 13 N -0.73 -17.69 5.12 -59.91 -0.31 -18.00 16 14 C -0.23 -6.37 9.99 -15.06 -0.15 -6.52 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.94 -27.49 13.06 55.49 0.72 -26.77 16 18 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 C -0.12 -1.64 4.62 -26.73 -0.12 -1.76 16 23 C -0.12 -1.24 5.75 -26.73 -0.15 -1.40 16 24 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 25 C -0.11 -1.27 5.77 -26.73 -0.15 -1.42 16 26 C -0.13 -1.76 4.48 -26.73 -0.12 -1.88 16 27 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.10 1.18 6.14 -51.93 -0.32 0.86 16 29 H 0.10 0.84 7.56 -51.93 -0.39 0.44 16 30 H 0.19 2.58 8.06 -52.49 -0.42 2.16 16 31 H 0.39 5.02 3.29 -40.82 -0.13 4.88 16 32 H 0.04 1.01 6.26 -51.93 -0.32 0.69 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.38 9.38 6.52 -40.82 -0.27 9.11 16 35 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.08 1.29 7.10 -51.93 -0.37 0.92 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.51 6.91 -51.93 -0.36 0.15 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.67 7.60 -51.93 -0.39 0.27 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.35 6.13 -51.93 -0.32 1.03 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -32.70 366.53 -9.47 -42.17 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.23 Total: 10.68 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.08 Total: 3.77 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -0.25 Total: -68.76 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.48 Total: -1.09 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.70 -9.47 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506512258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.290 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds