Wall clock time and date at job start Sat Apr 11 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34605 * 126.48710 * 2 1 4 4 Cl 1.73600 * 125.43471 * 359.97438 * 3 2 1 5 5 N 1.31018 * 109.12681 * 179.82544 * 3 2 1 6 6 C 1.33302 * 109.70786 * 0.45127 * 5 3 2 7 7 C 1.36679 * 107.82741 * 359.72389 * 6 5 3 8 8 C 1.46663 * 126.83993 * 179.97438 * 7 6 5 9 9 O 1.21692 * 119.99791 * 352.96675 * 8 7 6 10 10 N 1.34780 * 119.99466 * 172.97914 * 8 7 6 11 11 C 1.46506 * 119.99415 * 184.48481 * 10 8 7 12 12 C 1.53005 * 109.46834 * 297.41434 * 11 10 8 13 13 N 1.46491 * 109.47040 * 302.01310 * 12 11 10 14 14 C 1.36938 * 119.99731 * 185.07729 * 13 12 11 15 15 H 1.08001 * 120.00413 * 0.02562 * 14 13 12 16 16 C 1.38820 * 119.99947 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99796 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46843 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46907 * 119.99883 * 18 16 14 21 21 H 1.48497 * 109.46945 * 240.00255 * 18 16 14 22 22 C 1.53000 * 109.46884 * 177.41324 * 11 10 8 23 23 C 1.52994 * 109.47313 * 300.00213 * 22 11 10 24 24 C 1.52999 * 109.46876 * 299.99905 * 23 22 11 25 25 C 1.52995 * 109.47418 * 60.00313 * 24 23 22 26 26 C 1.52999 * 109.47267 * 57.41441 * 11 10 8 27 27 H 1.09002 * 109.46958 * 262.25939 * 1 2 3 28 28 H 1.09002 * 109.46645 * 142.26624 * 1 2 3 29 29 H 1.08998 * 109.47119 * 22.26244 * 1 2 3 30 30 H 1.07997 * 126.08719 * 179.72528 * 6 5 3 31 31 H 0.96995 * 120.00355 * 4.47676 * 10 8 7 32 32 H 1.08995 * 109.46672 * 62.02049 * 12 11 10 33 33 H 1.08999 * 109.46648 * 182.01637 * 12 11 10 34 34 H 0.97001 * 120.00334 * 5.08728 * 13 12 11 35 35 H 0.97003 * 119.99783 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46773 * 59.99855 * 22 11 10 37 37 H 1.09002 * 109.47060 * 179.97438 * 22 11 10 38 38 H 1.08999 * 109.47295 * 179.97438 * 23 22 11 39 39 H 1.08993 * 109.47415 * 59.99713 * 23 22 11 40 40 H 1.09002 * 109.47039 * 300.00104 * 24 23 22 41 41 H 1.09006 * 109.47340 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.47593 * 180.02562 * 25 24 23 43 43 H 1.08993 * 109.47240 * 59.99968 * 25 24 23 44 44 H 1.09002 * 109.47039 * 179.97438 * 26 11 10 45 45 H 1.09003 * 109.47489 * 300.00075 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2655 1.0822 0.0000 4 17 1.7268 2.7325 -0.0006 5 7 3.5160 0.6913 0.0038 6 6 3.5706 -0.6406 -0.0036 7 6 2.2877 -1.1120 -0.0061 8 6 1.8671 -2.5170 -0.0144 9 8 2.6947 -3.3990 -0.1488 10 7 0.5641 -2.8311 0.1266 11 6 0.1547 -4.2349 0.2171 12 6 0.5196 -4.9572 -1.0815 13 7 -0.1316 -4.2895 -2.2111 14 6 -0.0351 -4.8218 -3.4691 15 1 0.5207 -5.7340 -3.6285 16 6 -0.6517 -4.1888 -4.5398 17 7 -1.3286 -3.0769 -4.3457 18 14 -0.5195 -4.9145 -6.2560 19 1 0.2904 -6.1582 -6.2064 20 1 -1.8781 -5.2290 -6.7664 21 1 0.1339 -3.9334 -7.1592 22 6 -1.3576 -4.3121 0.4361 23 6 -1.7224 -3.5897 1.7345 24 6 -1.0024 -4.2563 2.9085 25 6 0.5098 -4.1792 2.6896 26 6 0.8747 -4.9015 1.3911 27 1 -0.3633 -0.1384 1.0183 28 1 -0.3633 -0.8128 -0.6290 29 1 -0.3633 0.9510 -0.3893 30 1 4.4687 -1.2404 -0.0069 31 1 -0.1026 -2.1279 0.1684 32 1 1.6005 -4.9332 -1.2191 33 1 0.1830 -5.9926 -1.0282 34 1 -0.6310 -3.4704 -2.0681 35 1 -1.7592 -2.6344 -5.0939 36 1 -1.8704 -3.8371 -0.4003 37 1 -1.6622 -5.3565 0.5029 38 1 -2.7998 -3.6443 1.8903 39 1 -1.4178 -2.5454 1.6672 40 1 -1.3070 -5.3007 2.9757 41 1 -1.2627 -3.7420 3.8337 42 1 1.0228 -4.6545 3.5258 43 1 0.8144 -3.1348 2.6224 44 1 0.5697 -5.9458 1.4586 45 1 1.9521 -4.8466 1.2352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506512258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:27 Heat of formation + Delta-G solvation = 13.122808 kcal Electronic energy + Delta-G solvation = -29161.428121 eV Core-core repulsion = 25240.370637 eV Total energy + Delta-G solvation = -3921.057484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.48509 -41.52240 -38.87673 -38.13716 -36.41772 -35.88933 -34.50050 -33.15503 -31.79343 -31.31981 -30.32226 -28.38637 -27.03841 -24.86348 -24.62929 -23.45614 -22.72470 -21.90425 -21.52829 -20.20715 -19.26264 -19.04632 -17.84722 -17.44017 -16.94952 -16.60371 -16.23918 -15.95526 -15.73183 -15.71469 -15.16465 -14.91664 -14.85180 -14.79218 -14.55336 -14.33349 -13.94269 -13.57041 -13.47001 -13.17956 -13.02187 -12.94677 -12.87414 -12.74183 -12.70300 -12.64063 -12.09028 -12.01848 -11.89182 -11.67100 -11.48668 -11.26721 -11.14357 -11.04250 -10.99836 -10.61218 -10.07769 -9.67891 -8.94680 -7.97157 -5.21890 0.00297 0.04209 1.43580 1.45224 1.46437 1.54045 1.54321 2.05946 2.22135 2.54161 3.30112 3.38466 3.51685 3.63407 3.79587 3.85568 3.90572 4.07566 4.09284 4.21991 4.24283 4.39594 4.45008 4.50235 4.59183 4.59832 4.62298 4.76318 4.84767 4.87523 5.10654 5.17051 5.19666 5.20400 5.23535 5.29891 5.36305 5.44345 5.48591 5.50224 5.50844 5.65512 6.26334 6.36094 6.53897 7.11897 7.34329 8.07972 8.36152 9.26089 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008279 B = 0.004828 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.151370 B = 5797.937878 C = 7737.677526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.423 5.423 3 C 0.260 3.740 4 Cl 0.065 6.935 5 N -0.493 5.493 6 C 0.064 3.936 7 C -0.078 4.078 8 C 0.599 3.401 9 O -0.547 6.547 10 N -0.699 5.699 11 C 0.182 3.818 12 C 0.139 3.861 13 N -0.728 5.728 14 C -0.241 4.241 15 H 0.064 0.936 16 C -0.067 4.067 17 N -0.962 5.962 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.297 1.297 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.107 4.107 26 C -0.125 4.125 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.199 0.801 31 H 0.401 0.599 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 7.386 18.209 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.109 5.109 3 C -0.027 4.027 4 Cl 0.093 6.907 5 N -0.215 5.215 6 C -0.090 4.090 7 C -0.194 4.194 8 C 0.385 3.615 9 O -0.425 6.425 10 N -0.355 5.355 11 C 0.097 3.903 12 C 0.011 3.989 13 N -0.371 5.371 14 C -0.373 4.373 15 H 0.082 0.918 16 C -0.260 4.260 17 N -0.613 5.613 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.224 1.224 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.163 4.163 27 H 0.143 0.857 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.216 0.784 31 H 0.242 0.758 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.312 7.261 18.027 19.437 hybrid contribution -0.946 -0.096 -1.615 1.874 sum -1.258 7.165 16.412 17.952 Atomic orbital electron populations 1.22849 0.73605 1.07260 1.06586 1.45342 1.09078 1.04364 1.52088 1.23486 0.86608 0.85487 1.07095 1.98432 1.88307 1.07059 1.96935 1.70099 1.17175 1.12684 1.21578 1.22816 0.96420 0.89434 1.00350 1.21302 0.92220 0.87340 1.18555 1.16760 0.83194 0.85393 0.76130 1.90784 1.53148 1.47885 1.50633 1.46226 1.06761 1.09194 1.73282 1.20557 0.95689 0.80067 0.94024 1.21197 0.95720 0.94798 0.87136 1.42263 1.62436 1.29301 1.03145 1.19577 1.25673 1.05573 0.86449 0.91767 1.25353 1.01206 0.98353 1.01058 1.69751 1.40283 1.20284 1.30972 0.85200 0.77043 0.77554 0.80745 1.19807 1.21553 1.22399 1.21724 0.92002 1.02767 0.98724 1.21553 1.01159 0.99147 0.93236 1.21531 0.93898 1.01568 0.98052 1.21422 0.97088 0.99943 0.96041 1.21850 1.00782 0.99940 0.93761 0.85684 0.89329 0.85857 0.78394 0.75772 0.96495 0.95602 0.79110 0.94075 0.92551 0.90141 0.90047 0.91888 0.91328 0.90304 0.91019 0.93059 0.90321 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.54 127.77 1.22 1.88 16 2 N -0.42 -10.67 3.18 -528.36 -1.68 -12.35 16 3 C 0.26 6.81 8.48 180.25 1.53 8.34 16 4 Cl 0.07 1.27 28.59 -2.72 -0.08 1.19 16 5 N -0.49 -14.95 11.21 -190.25 -2.13 -17.09 16 6 C 0.06 1.96 11.66 84.10 0.98 2.94 16 7 C -0.08 -2.41 6.91 39.95 0.28 -2.13 16 8 C 0.60 20.49 7.18 86.44 0.62 21.11 16 9 O -0.55 -22.15 13.15 -4.32 -0.06 -22.21 16 10 N -0.70 -20.68 3.42 -426.83 -1.46 -22.14 16 11 C 0.18 5.60 0.32 3.60 0.00 5.60 16 12 C 0.14 5.83 4.97 86.38 0.43 6.26 16 13 N -0.73 -36.38 5.12 -343.46 -1.76 -38.14 16 14 C -0.24 -13.64 9.99 84.04 0.84 -12.80 16 15 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16 16 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 17 N -0.96 -56.78 13.06 21.65 0.28 -56.49 16 18 Si 0.96 46.72 29.55 68.60 2.03 48.75 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 22 C -0.11 -3.00 4.62 30.59 0.14 -2.86 16 23 C -0.11 -2.04 5.75 30.59 0.18 -1.86 16 24 C -0.11 -1.83 5.92 30.59 0.18 -1.65 16 25 C -0.11 -2.17 5.77 30.60 0.18 -1.99 16 26 C -0.12 -3.34 4.48 30.60 0.14 -3.20 16 27 H 0.13 1.35 8.13 -2.39 -0.02 1.33 16 28 H 0.09 1.91 6.14 -2.39 -0.01 1.90 16 29 H 0.12 1.69 7.56 -2.39 -0.02 1.67 16 30 H 0.20 5.55 8.06 -2.91 -0.02 5.52 16 31 H 0.40 10.00 3.29 -92.71 -0.31 9.70 16 32 H 0.02 0.82 6.26 -2.39 -0.01 0.81 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.38 19.02 6.52 -92.71 -0.60 18.41 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.06 1.77 7.10 -2.38 -0.02 1.76 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.01 6.91 -2.39 -0.02 1.00 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 43 H 0.05 1.10 7.60 -2.39 -0.02 1.08 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.06 2.00 6.13 -2.39 -0.01 1.98 16 Total: -1.00 -71.53 366.53 2.44 -69.09 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.13 Total: 33.12 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 7.17 Total: 16.27 kcal Atomic # 7 Polarization: -139.46 SS G_CDS: -6.75 Total: -146.21 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.06 Total: -22.21 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Atomic # 17 Polarization: 1.27 SS G_CDS: -0.08 Total: 1.19 kcal Total: -71.53 2.44 -69.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506512258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.213 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds