Wall clock time and date at job start Sat Apr 11 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99963 * 2 1 4 4 C 1.53000 * 109.47511 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46836 * 64.99877 * 4 3 2 6 6 N 1.28389 * 119.10241 * 270.25539 * 5 4 3 7 7 C 1.31409 * 122.26807 * 180.28025 * 6 5 4 8 8 C 1.47880 * 119.89553 * 179.75018 * 7 6 5 9 9 O 1.21552 * 120.00142 * 179.72225 * 8 7 6 10 10 N 1.34775 * 120.00040 * 359.71605 * 8 7 6 11 11 C 1.46502 * 119.99947 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46925 * 180.02562 * 11 10 8 13 13 H 1.08995 * 109.47216 * 295.00133 * 12 11 10 14 14 C 1.52999 * 109.47083 * 175.00128 * 12 11 10 15 15 O 1.42898 * 109.47018 * 305.00136 * 14 12 11 16 16 N 1.46498 * 109.47065 * 55.00022 * 12 11 10 17 17 C 1.36943 * 119.99752 * 204.72207 * 16 12 11 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 12 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 12 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 C 1.41580 * 120.20618 * 359.46501 * 7 6 5 26 26 C 1.36320 * 118.24159 * 0.25981 * 25 7 6 27 27 C 1.34613 * 119.10026 * 90.00461 * 5 4 3 28 28 O 1.21978 * 120.22438 * 0.02562 * 27 5 4 29 29 H 1.08991 * 109.47253 * 299.99588 * 1 2 3 30 30 H 1.09002 * 109.46858 * 60.00518 * 1 2 3 31 31 H 1.09004 * 109.46852 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47109 * 59.99468 * 3 2 1 33 33 H 1.08997 * 109.47033 * 300.00213 * 3 2 1 34 34 H 1.09006 * 109.46767 * 304.99967 * 4 3 2 35 35 H 1.08996 * 109.47242 * 185.00497 * 4 3 2 36 36 H 0.96997 * 119.99994 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46993 * 60.00870 * 11 10 8 38 38 H 1.08999 * 109.47017 * 300.00291 * 11 10 8 39 39 H 1.09003 * 109.47083 * 65.00130 * 14 12 11 40 40 H 1.08995 * 109.47300 * 184.99893 * 14 12 11 41 41 H 0.96709 * 114.00043 * 179.97438 * 15 14 12 42 42 H 0.97001 * 120.00384 * 25.00562 * 16 12 11 43 43 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 44 44 H 1.08004 * 120.87464 * 180.27393 * 25 7 6 45 45 H 1.08003 * 121.03347 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5641 -1.2508 6 7 4.0796 -0.7142 -1.3115 7 6 4.4744 -1.3354 -2.4002 8 6 4.5795 -2.8104 -2.4102 9 8 4.9396 -3.3873 -3.4177 10 7 4.2760 -3.5151 -1.3022 11 6 4.3807 -4.9764 -1.3119 12 6 3.9820 -5.5254 0.0595 13 1 4.6999 -5.1898 0.8079 14 6 3.9709 -7.0546 0.0131 15 8 3.1176 -7.4928 -1.0462 16 7 2.6461 -5.0377 0.4111 17 6 2.2736 -4.9495 1.7260 18 1 2.9663 -5.2352 2.5038 19 6 1.0057 -4.4929 2.0590 20 7 0.1614 -4.1452 1.1110 21 14 0.4978 -4.3718 3.8525 22 1 0.8487 -3.0274 4.3767 23 1 -0.9679 -4.5807 3.9671 24 1 1.2089 -5.4111 4.6395 25 6 4.7936 -0.5972 -3.5654 26 6 4.6845 0.7608 -3.5188 27 6 4.2582 1.3493 -2.3074 28 8 4.1465 2.5608 -2.2191 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5686 0.8428 35 1 3.9784 2.1766 0.0903 36 1 3.9884 -3.0548 -0.4983 37 1 5.4077 -5.2656 -1.5348 38 1 3.7152 -5.3832 -2.0733 39 1 4.9829 -7.4202 -0.1608 40 1 3.6018 -7.4442 0.9617 41 1 3.0627 -8.4542 -1.1349 42 1 2.0239 -4.7812 -0.2875 43 1 -0.7244 -3.8258 1.3437 44 1 5.1150 -1.0969 -4.4673 45 1 4.9162 1.3680 -4.3814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507215206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:37 Heat of formation + Delta-G solvation = -104.557938 kcal Electronic energy + Delta-G solvation = -30834.311419 eV Core-core repulsion = 26467.441750 eV Total energy + Delta-G solvation = -4366.869669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.26952 -40.75511 -38.93663 -38.91097 -38.48955 -36.37849 -36.00455 -35.18639 -33.31469 -32.63597 -31.36909 -29.94348 -27.76971 -27.05581 -26.16061 -25.62441 -25.30758 -23.54231 -22.15407 -21.55238 -19.78163 -19.41569 -19.04338 -18.08262 -18.00875 -17.82344 -17.56919 -17.21029 -17.05748 -16.59744 -16.29013 -16.19813 -15.77773 -15.55678 -15.28213 -14.96659 -14.80394 -14.60766 -14.46854 -14.23283 -14.11511 -13.86400 -13.62847 -13.23486 -12.99581 -12.95757 -12.71671 -12.70855 -12.58911 -12.22249 -12.18777 -11.83870 -11.66910 -11.49828 -11.37349 -10.94895 -10.85287 -10.68124 -10.65171 -10.07239 -9.68306 -8.89960 -7.80170 -5.08228 -0.60303 0.00778 0.98283 1.52509 1.52754 1.59696 1.67871 2.09547 2.43840 2.63110 2.71992 2.91253 3.51134 3.58067 3.65839 3.69042 3.74080 3.82274 3.96376 3.97670 4.08308 4.24301 4.31145 4.35106 4.46801 4.51047 4.53304 4.56185 4.62744 4.67561 4.68905 4.83223 4.90303 4.93090 4.96262 5.06691 5.29039 5.46722 5.62701 6.15901 6.33621 6.37415 6.48865 6.86704 7.09547 7.13567 7.46314 8.18371 8.43805 9.41859 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009053 B = 0.004690 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.187869 B = 5968.591764 C = 8471.926156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.400 6.400 3 C 0.041 3.959 4 C 0.106 3.894 5 N -0.326 5.326 6 N -0.165 5.165 7 C 0.004 3.996 8 C 0.585 3.415 9 O -0.561 6.561 10 N -0.692 5.692 11 C 0.127 3.873 12 C 0.160 3.840 13 H 0.077 0.923 14 C 0.066 3.934 15 O -0.583 6.583 16 N -0.720 5.720 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.061 4.061 20 N -0.955 5.955 21 Si 0.959 3.041 22 H -0.290 1.290 23 H -0.304 1.304 24 H -0.273 1.273 25 C -0.021 4.021 26 C -0.191 4.191 27 C 0.471 3.529 28 O -0.557 6.557 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.415 0.585 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.385 0.615 42 H 0.372 0.628 43 H 0.245 0.755 44 H 0.183 0.817 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 7.437 -4.616 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.319 6.319 3 C -0.037 4.037 4 C -0.013 4.013 5 N -0.148 5.148 6 N 0.004 4.996 7 C -0.167 4.167 8 C 0.369 3.631 9 O -0.439 6.439 10 N -0.342 5.342 11 C 0.003 3.997 12 C 0.050 3.950 13 H 0.095 0.905 14 C -0.015 4.015 15 O -0.390 6.390 16 N -0.360 5.360 17 C -0.368 4.368 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.605 5.605 21 Si 0.790 3.210 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.199 1.199 25 C -0.044 4.044 26 C -0.220 4.220 27 C 0.272 3.728 28 O -0.438 6.438 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.252 0.748 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.233 0.767 42 H 0.204 0.796 43 H 0.054 0.946 44 H 0.200 0.800 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.739 8.041 -4.242 13.323 hybrid contribution -1.191 0.044 0.524 1.302 sum 8.547 8.085 -3.718 12.339 Atomic orbital electron populations 1.22699 0.80035 1.02614 1.00373 1.88061 1.20815 1.27565 1.95507 1.22985 0.92482 0.85706 1.02479 1.22451 0.94190 1.01307 0.83328 1.46945 1.51022 1.01839 1.14973 1.71250 1.05187 0.96272 1.26917 1.21780 1.07642 0.95076 0.92154 1.17379 0.77648 0.84670 0.83429 1.90762 1.49771 1.70336 1.33033 1.45906 1.65383 1.08179 1.14760 1.21533 1.01606 0.78331 0.98240 1.20856 0.88262 0.91782 0.94065 0.90473 1.22862 0.92905 0.96438 0.89310 1.86522 1.70376 1.27937 1.54131 1.42425 1.11956 1.77276 1.04311 1.19509 0.97153 1.35084 0.85043 0.90516 1.25326 0.97132 1.02962 1.00012 1.69840 1.06963 1.51632 1.32026 0.85359 0.76362 0.77657 0.81591 1.21699 1.23168 1.19856 1.22371 0.90238 0.93609 0.98225 1.22872 1.05120 0.95414 0.98625 1.18529 0.80407 0.88004 0.85882 1.90930 1.55902 1.13355 1.83603 0.92593 0.93451 0.91261 0.88438 0.93289 0.86188 0.84004 0.74799 0.89398 0.92380 0.91498 0.94702 0.76720 0.79585 0.94554 0.79993 0.78663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.20 11.01 113.37 1.25 2.45 16 2 O -0.40 -13.56 10.53 -148.98 -1.57 -15.13 16 3 C 0.04 1.01 6.28 71.98 0.45 1.46 16 4 C 0.11 2.44 5.94 86.38 0.51 2.95 16 5 N -0.33 -8.90 3.17 -472.48 -1.50 -10.40 16 6 N -0.17 -4.98 9.99 -48.19 -0.48 -5.46 16 7 C 0.00 0.12 6.84 42.59 0.29 0.41 16 8 C 0.59 19.39 7.81 86.80 0.68 20.07 16 9 O -0.56 -20.19 16.38 -3.88 -0.06 -20.26 16 10 N -0.69 -23.70 5.38 -465.93 -2.51 -26.21 16 11 C 0.13 4.26 5.12 86.38 0.44 4.70 16 12 C 0.16 5.71 2.84 44.99 0.13 5.84 16 13 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 14 C 0.07 2.07 6.85 71.98 0.49 2.56 16 15 O -0.58 -19.39 12.64 -148.98 -1.88 -21.27 16 16 N -0.72 -33.61 4.51 -322.94 -1.46 -35.07 16 17 C -0.24 -12.11 9.93 84.03 0.83 -11.27 16 18 H 0.08 3.74 7.83 -2.91 -0.02 3.71 16 19 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 20 N -0.95 -55.78 13.06 21.65 0.28 -55.50 16 21 Si 0.96 44.29 29.55 68.60 2.03 46.32 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 C -0.02 -0.48 9.67 22.65 0.22 -0.26 16 26 C -0.19 -4.11 10.11 22.57 0.23 -3.88 16 27 C 0.47 12.72 7.47 85.01 0.63 13.36 16 28 O -0.56 -17.03 16.62 -5.24 -0.09 -17.11 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.14 2.62 7.36 -2.39 -0.02 2.60 16 36 H 0.41 15.23 7.47 -92.71 -0.69 14.54 16 37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.06 2.22 7.39 -2.39 -0.02 2.21 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.38 8.86 9.12 -74.05 -0.68 8.18 16 42 H 0.37 19.86 7.80 -92.71 -0.72 19.13 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.18 3.33 7.72 -2.91 -0.02 3.30 16 45 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -71.77 390.92 -1.64 -73.41 By element: Atomic # 1 Polarization: 52.18 SS G_CDS: -1.04 Total: 51.14 kcal Atomic # 6 Polarization: 28.91 SS G_CDS: 6.63 Total: 35.54 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -5.66 Total: -132.64 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -3.60 Total: -73.77 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.77 -1.64 -73.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507215206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.150 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds