Wall clock time and date at job start Sat Apr 11 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48503 * 109.46946 * 240.00134 * 3 2 1 5 5 H 1.48505 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47248 * 119.99526 * 3 2 1 7 7 C 1.38800 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00181 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47050 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00456 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00095 * 180.02562 * 11 10 9 14 14 C 1.46965 * 120.59776 * 180.02562 * 13 11 10 15 15 C 1.53373 * 108.63548 * 235.24778 * 14 13 11 16 16 N 1.46971 * 108.62793 * 310.57280 * 15 14 13 17 17 C 1.34777 * 120.58909 * 235.19967 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72975 * 17 16 15 20 20 C 1.53004 * 109.47208 * 180.27843 * 19 17 16 21 21 C 1.52997 * 109.47000 * 179.97438 * 20 19 17 22 22 C 1.53010 * 109.46712 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50112 * 243.62046 * 22 21 20 24 24 C 1.52997 * 60.00280 * 252.51437 * 23 22 21 25 25 C 1.46959 * 118.81572 * 55.48449 * 16 15 14 26 26 C 1.46966 * 120.59233 * 0.02562 * 13 11 10 27 27 H 0.96998 * 120.00442 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46710 * 60.00494 * 10 9 7 29 29 H 1.08997 * 109.47178 * 300.00152 * 10 9 7 30 30 H 1.09006 * 109.61234 * 115.49916 * 14 13 11 31 31 H 1.08999 * 109.74797 * 355.07071 * 14 13 11 32 32 H 1.08998 * 109.60934 * 190.83234 * 15 14 13 33 33 H 1.08993 * 109.75118 * 70.39769 * 15 14 13 34 34 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 35 35 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 36 36 H 1.09000 * 109.46887 * 300.00372 * 20 19 17 37 37 H 1.08998 * 109.46846 * 59.99549 * 20 19 17 38 38 H 1.08995 * 109.47672 * 299.99669 * 21 20 19 39 39 H 1.09001 * 109.47109 * 60.00906 * 21 20 19 40 40 H 1.08995 * 115.54788 * 29.33906 * 22 21 20 41 41 H 1.09002 * 117.49778 * 0.02562 * 23 22 21 42 42 H 1.09004 * 117.49483 * 145.02415 * 23 22 21 43 43 H 1.08995 * 117.50235 * 252.50901 * 24 23 22 44 44 H 1.09004 * 117.49547 * 107.48884 * 24 23 22 45 45 H 1.08999 * 109.61504 * 64.25941 * 25 16 15 46 46 H 1.08999 * 109.61399 * 184.77714 * 25 16 15 47 47 H 1.09000 * 109.61018 * 244.50325 * 26 13 11 48 48 H 1.09002 * 109.61040 * 4.83837 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5024 0.0038 13 7 2.8441 -6.3432 0.0049 14 6 2.3430 -7.7248 0.0050 15 6 2.9535 -8.4674 1.2000 16 7 4.4056 -8.2406 1.2017 17 6 5.2623 -9.2810 1.2040 18 8 4.8370 -10.4168 1.2041 19 6 6.7487 -9.0330 1.1996 20 6 7.4892 -10.3719 1.1963 21 6 8.9983 -10.1201 1.1912 22 6 9.7387 -11.4591 1.1885 23 6 10.6124 -11.7857 2.4013 24 6 11.2633 -11.4231 1.0650 25 6 4.9067 -6.8590 1.2074 26 6 4.2961 -6.1164 0.0063 27 1 -0.4851 0.8400 -0.0004 28 1 3.1243 -3.7306 0.8928 29 1 3.1245 -3.7322 -0.8871 30 1 2.6348 -8.2198 -0.9213 31 1 1.2565 -7.7225 0.0920 32 1 2.7500 -9.5345 1.1103 33 1 2.5231 -8.0896 2.1274 34 1 7.0199 -8.4657 0.3091 35 1 7.0254 -8.4671 2.0891 36 1 7.2180 -10.9392 2.0867 37 1 7.2125 -10.9379 0.3068 38 1 9.2691 -9.5531 0.3006 39 1 9.2752 -9.5541 2.0806 40 1 9.2143 -12.2853 0.7084 41 1 10.6594 -11.0469 3.2013 42 1 10.6628 -12.8271 2.7194 43 1 11.7420 -12.2257 0.5041 44 1 11.7389 -10.4454 0.9858 45 1 4.6117 -6.3666 2.1340 46 1 5.9933 -6.8636 1.1225 47 1 4.7267 -6.4970 -0.9198 48 1 4.4996 -5.0490 0.0927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522427328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:47 Heat of formation + Delta-G solvation = -51.641323 kcal Electronic energy + Delta-G solvation = -26544.169189 eV Core-core repulsion = 22725.887371 eV Total energy + Delta-G solvation = -3818.281818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67364 -39.35938 -38.12436 -36.98770 -34.29640 -34.04547 -32.47226 -32.03440 -29.45926 -28.85296 -27.10801 -25.52741 -24.11897 -23.36021 -22.78453 -22.00617 -20.88183 -20.10238 -18.67011 -17.86394 -17.23500 -16.57958 -16.34952 -16.19055 -15.83688 -15.74239 -15.49422 -14.95257 -14.84455 -14.74336 -14.09044 -14.00365 -13.90260 -13.48508 -13.33427 -12.95608 -12.69352 -12.57075 -12.40577 -12.17983 -11.96701 -11.94560 -11.82258 -11.75246 -11.51688 -11.39869 -11.23285 -11.08746 -11.07608 -10.80478 -10.63370 -10.28359 -10.02462 -9.86257 -9.49249 -9.36818 -9.10092 -8.44371 -8.28551 -6.55544 -6.25637 -3.97089 2.34416 2.50991 2.92388 2.95770 3.19997 3.22078 3.25894 3.37543 3.51188 4.03131 4.15738 4.25184 4.44865 4.49543 4.52091 4.53326 4.66134 4.70877 4.83522 4.86374 4.88917 4.99530 5.08828 5.10421 5.14449 5.21380 5.22751 5.28315 5.32910 5.37096 5.42026 5.48814 5.52798 5.54338 5.66907 5.68808 5.74083 5.77160 5.80141 5.86143 6.00062 6.01802 6.16636 6.46171 7.05520 7.42123 7.54628 7.87848 8.30253 8.44486 9.19371 10.81668 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.001906 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.785608 B =14684.877446 C =16142.351642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.513 6.513 13 N -0.622 5.622 14 C 0.101 3.899 15 C 0.097 3.903 16 N -0.614 5.614 17 C 0.515 3.485 18 O -0.542 6.542 19 C -0.141 4.141 20 C -0.101 4.101 21 C -0.090 4.090 22 C -0.152 4.152 23 C -0.182 4.182 24 C -0.183 4.183 25 C 0.091 3.909 26 C 0.094 3.906 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.073 0.927 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.564 -20.015 2.768 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.387 6.387 13 N -0.359 5.359 14 C -0.023 4.023 15 C -0.026 4.026 16 N -0.348 5.348 17 C 0.304 3.696 18 O -0.419 6.419 19 C -0.181 4.181 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.171 4.171 23 C -0.219 4.219 24 C -0.220 4.220 25 C -0.033 4.033 26 C -0.031 4.031 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.116 0.884 47 H 0.091 0.909 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.362 -20.800 2.765 27.883 hybrid contribution 2.079 1.417 0.007 2.516 sum 20.441 -19.382 2.772 28.306 Atomic orbital electron populations 1.70001 1.05963 1.27635 1.46585 1.24990 0.95024 0.99027 0.94476 0.86227 0.79252 0.81248 0.78789 1.19929 1.20795 1.19925 1.22807 0.94832 0.91609 1.59290 0.90967 1.85452 1.04795 0.96321 1.96706 1.23555 1.06648 0.95298 1.04691 1.20394 0.86221 0.86175 0.74854 1.90704 1.15135 1.85127 1.47693 1.48055 1.06111 1.05824 1.75889 1.21893 1.01339 0.81363 0.97678 1.22034 0.79313 1.02302 0.98918 1.48123 1.06768 1.06262 1.73636 1.20781 0.88980 0.84398 0.75444 1.90696 1.79394 1.21917 1.49888 1.21742 0.91394 1.00602 1.04381 1.21323 0.93210 0.95578 1.03753 1.21207 0.94312 0.95085 1.02106 1.22349 0.92426 0.99600 1.02686 1.23039 1.04752 1.02342 0.91756 1.22971 0.95351 1.03016 1.00706 1.22319 0.99735 0.81677 0.99595 1.22181 0.80758 1.02079 0.98039 0.92076 0.89202 0.89201 0.91387 0.87620 0.87938 0.90829 0.88714 0.88813 0.91065 0.91110 0.91429 0.91729 0.87724 0.88798 0.88985 0.88940 0.88812 0.90235 0.88414 0.90899 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 8 H 0.07 1.86 7.80 -52.49 -0.41 1.46 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.89 4.50 36.00 0.16 -2.73 16 11 C 0.54 9.64 7.72 -10.99 -0.08 9.56 16 12 O -0.51 -11.32 15.27 5.55 0.08 -11.23 16 13 N -0.62 -8.21 2.95 -172.19 -0.51 -8.71 16 14 C 0.10 1.20 6.59 -3.60 -0.02 1.18 16 15 C 0.10 1.04 6.59 -3.59 -0.02 1.01 16 16 N -0.61 -5.82 2.94 -172.20 -0.51 -6.33 16 17 C 0.52 5.16 7.70 -10.98 -0.08 5.08 16 18 O -0.54 -7.42 15.39 5.55 0.09 -7.34 16 19 C -0.14 -0.89 4.04 -27.88 -0.11 -1.01 16 20 C -0.10 -0.70 4.46 -26.73 -0.12 -0.82 16 21 C -0.09 -0.49 5.50 -26.73 -0.15 -0.64 16 22 C -0.15 -0.92 5.74 -90.61 -0.52 -1.44 16 23 C -0.18 -1.04 10.18 -26.73 -0.27 -1.31 16 24 C -0.18 -1.01 10.25 -26.73 -0.27 -1.28 16 25 C 0.09 0.67 6.54 -3.35 -0.02 0.65 16 26 C 0.09 0.86 6.52 -3.35 -0.02 0.84 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.54 7.72 -51.92 -0.40 1.14 16 29 H 0.09 1.57 7.91 -51.92 -0.41 1.16 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.41 7.00 -51.93 -0.36 1.05 16 32 H 0.10 1.12 6.99 -51.93 -0.36 0.76 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.44 7.73 -51.92 -0.40 0.04 16 35 H 0.09 0.45 7.90 -51.93 -0.41 0.04 16 36 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 40 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.09 0.50 8.03 -51.93 -0.42 0.08 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.43 5.91 -51.93 -0.31 0.12 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.10 0.91 5.91 -51.93 -0.31 0.60 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -35.38 401.04 -10.62 -46.01 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -7.98 Total: -2.07 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.35 Total: -3.48 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.28 Total: -39.99 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.17 Total: -18.57 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.38 -10.62 -46.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522427328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.635 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds