Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48503 * 109.46946 * 240.00134 * 3 2 1 5 5 H 1.48505 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47248 * 119.99526 * 3 2 1 7 7 C 1.38800 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00147 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00181 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47050 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00456 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00095 * 180.02562 * 11 10 9 14 14 C 1.46965 * 120.59776 * 180.02562 * 13 11 10 15 15 C 1.53373 * 108.63548 * 235.24778 * 14 13 11 16 16 N 1.46971 * 108.62793 * 310.57280 * 15 14 13 17 17 C 1.34777 * 120.58909 * 235.19967 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72975 * 17 16 15 20 20 C 1.53004 * 109.47208 * 180.27843 * 19 17 16 21 21 C 1.52997 * 109.47000 * 179.97438 * 20 19 17 22 22 C 1.53010 * 109.46712 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50112 * 243.62046 * 22 21 20 24 24 C 1.52997 * 60.00280 * 252.51437 * 23 22 21 25 25 C 1.46959 * 118.81572 * 55.48449 * 16 15 14 26 26 C 1.46966 * 120.59233 * 0.02562 * 13 11 10 27 27 H 0.96998 * 120.00442 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.46710 * 60.00494 * 10 9 7 29 29 H 1.08997 * 109.47178 * 300.00152 * 10 9 7 30 30 H 1.09006 * 109.61234 * 115.49916 * 14 13 11 31 31 H 1.08999 * 109.74797 * 355.07071 * 14 13 11 32 32 H 1.08998 * 109.60934 * 190.83234 * 15 14 13 33 33 H 1.08993 * 109.75118 * 70.39769 * 15 14 13 34 34 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 35 35 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 36 36 H 1.09000 * 109.46887 * 300.00372 * 20 19 17 37 37 H 1.08998 * 109.46846 * 59.99549 * 20 19 17 38 38 H 1.08995 * 109.47672 * 299.99669 * 21 20 19 39 39 H 1.09001 * 109.47109 * 60.00906 * 21 20 19 40 40 H 1.08995 * 115.54788 * 29.33906 * 22 21 20 41 41 H 1.09002 * 117.49778 * 0.02562 * 23 22 21 42 42 H 1.09004 * 117.49483 * 145.02415 * 23 22 21 43 43 H 1.08995 * 117.50235 * 252.50901 * 24 23 22 44 44 H 1.09004 * 117.49547 * 107.48884 * 24 23 22 45 45 H 1.08999 * 109.61504 * 64.25941 * 25 16 15 46 46 H 1.08999 * 109.61399 * 184.77714 * 25 16 15 47 47 H 1.09000 * 109.61018 * 244.50325 * 26 13 11 48 48 H 1.09002 * 109.61040 * 4.83837 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5024 0.0038 13 7 2.8441 -6.3432 0.0049 14 6 2.3430 -7.7248 0.0050 15 6 2.9535 -8.4674 1.2000 16 7 4.4056 -8.2406 1.2017 17 6 5.2623 -9.2810 1.2040 18 8 4.8370 -10.4168 1.2041 19 6 6.7487 -9.0330 1.1996 20 6 7.4892 -10.3719 1.1963 21 6 8.9983 -10.1201 1.1912 22 6 9.7387 -11.4591 1.1885 23 6 10.6124 -11.7857 2.4013 24 6 11.2633 -11.4231 1.0650 25 6 4.9067 -6.8590 1.2074 26 6 4.2961 -6.1164 0.0063 27 1 -0.4851 0.8400 -0.0004 28 1 3.1243 -3.7306 0.8928 29 1 3.1245 -3.7322 -0.8871 30 1 2.6348 -8.2198 -0.9213 31 1 1.2565 -7.7225 0.0920 32 1 2.7500 -9.5345 1.1103 33 1 2.5231 -8.0896 2.1274 34 1 7.0199 -8.4657 0.3091 35 1 7.0254 -8.4671 2.0891 36 1 7.2180 -10.9392 2.0867 37 1 7.2125 -10.9379 0.3068 38 1 9.2691 -9.5531 0.3006 39 1 9.2752 -9.5541 2.0806 40 1 9.2143 -12.2853 0.7084 41 1 10.6594 -11.0469 3.2013 42 1 10.6628 -12.8271 2.7194 43 1 11.7420 -12.2257 0.5041 44 1 11.7389 -10.4454 0.9858 45 1 4.6117 -6.3666 2.1340 46 1 5.9933 -6.8636 1.1225 47 1 4.7267 -6.4970 -0.9198 48 1 4.4996 -5.0490 0.0927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522427328.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -73.094032 kcal Electronic energy + Delta-G solvation = -26545.099449 eV Core-core repulsion = 22725.887371 eV Total energy + Delta-G solvation = -3819.212077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58793 -40.48844 -38.60432 -38.02279 -35.16659 -34.78611 -34.55858 -32.93178 -30.77582 -29.52490 -28.03115 -27.56487 -24.93808 -24.13832 -23.21914 -22.76592 -21.32398 -21.08260 -19.97512 -19.24920 -18.41570 -17.51753 -17.22214 -17.02113 -16.85746 -16.78747 -16.70202 -16.34398 -15.81616 -15.56294 -15.27396 -14.93755 -14.83893 -14.58100 -14.48137 -14.29256 -13.60467 -13.46663 -13.25553 -13.15269 -12.97489 -12.84302 -12.76606 -12.64725 -12.55908 -12.50579 -12.40114 -12.34054 -11.88090 -11.73351 -11.71560 -11.10390 -11.09816 -10.92640 -10.81547 -10.68382 -10.35690 -10.22901 -9.42108 -8.65278 -8.32072 -6.10519 1.25084 1.46048 1.46260 1.50931 1.55858 1.64890 1.82197 2.17470 2.29634 2.95303 3.02397 3.25127 3.44199 3.63119 3.74406 3.76712 3.95504 4.06929 4.08826 4.10621 4.18073 4.19660 4.22157 4.26420 4.35510 4.42599 4.46692 4.50237 4.61776 4.64371 4.75261 4.77002 4.82511 4.83654 4.91593 4.94911 4.95104 5.11723 5.28041 5.29619 5.35885 5.39486 5.43112 5.44267 5.54044 6.18403 6.22260 6.37618 7.09083 7.09808 7.13239 8.76748 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.001906 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.785608 B =14684.877446 C =16142.351642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.087 0.913 9 S -0.157 6.157 10 C -0.123 4.123 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.609 5.609 14 C 0.104 3.896 15 C 0.105 3.895 16 N -0.614 5.614 17 C 0.511 3.489 18 O -0.587 6.587 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.082 4.082 22 C -0.164 4.164 23 C -0.188 4.188 24 C -0.181 4.181 25 C 0.093 3.907 26 C 0.084 3.916 27 H 0.270 0.730 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.140 0.860 47 H 0.094 0.906 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.642 -19.107 2.823 31.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.691 4.691 8 H 0.105 0.895 9 S 0.070 5.930 10 C -0.273 4.273 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.344 5.344 14 C -0.019 4.019 15 C -0.019 4.019 16 N -0.347 5.347 17 C 0.302 3.698 18 O -0.467 6.467 19 C -0.173 4.173 20 C -0.135 4.135 21 C -0.119 4.119 22 C -0.182 4.182 23 C -0.224 4.224 24 C -0.218 4.218 25 C -0.030 4.030 26 C -0.039 4.039 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.158 0.842 47 H 0.113 0.887 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 22.511 -19.910 2.823 30.185 hybrid contribution 0.869 0.952 -0.015 1.289 sum 23.380 -18.958 2.808 30.231 Atomic orbital electron populations 1.70183 1.08056 1.28605 1.48064 1.26130 0.95913 1.03357 0.93798 0.85013 0.77784 0.75675 0.79592 1.18563 1.20806 1.18452 1.23171 0.95441 0.91738 1.58775 0.89487 1.85697 1.10795 0.99465 1.97050 1.23366 1.03420 0.93742 1.06818 1.20244 0.85937 0.86733 0.74878 1.90690 1.17422 1.85747 1.50560 1.48042 1.07607 1.05070 1.73667 1.21906 1.00396 0.80763 0.98866 1.21818 0.80604 1.01587 0.97911 1.48221 1.05963 1.07334 1.73163 1.21507 0.90493 0.83641 0.74177 1.90685 1.80325 1.23792 1.51877 1.21808 0.88026 1.00660 1.06849 1.21241 0.94468 0.95766 1.01994 1.21152 0.92806 0.94825 1.03107 1.22405 0.92916 0.99888 1.03032 1.23111 1.04790 1.02541 0.92003 1.23036 0.94846 1.03521 1.00352 1.22514 1.01995 0.79863 0.98634 1.22587 0.77856 1.03324 1.00101 0.92105 0.86712 0.87019 0.90203 0.89682 0.88552 0.91332 0.85888 0.86249 0.93046 0.92847 0.90271 0.90694 0.88719 0.88261 0.89103 0.88755 0.87997 0.90180 0.84186 0.88737 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.20 13.22 21.65 0.29 -54.91 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 42.11 29.55 68.60 2.03 44.13 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.54 -29.82 9.50 67.95 0.65 -29.17 16 8 H 0.09 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.16 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.12 -4.50 4.50 71.23 0.32 -4.18 16 11 C 0.53 18.98 7.72 87.66 0.68 19.65 16 12 O -0.57 -25.82 15.27 -3.05 -0.05 -25.87 16 13 N -0.61 -15.01 2.95 -817.07 -2.41 -17.42 16 14 C 0.10 2.42 6.59 86.42 0.57 2.99 16 15 C 0.10 2.15 6.59 86.41 0.57 2.72 16 16 N -0.61 -10.05 2.94 -817.10 -2.40 -12.45 16 17 C 0.51 9.09 7.70 87.66 0.67 9.77 16 18 O -0.59 -15.80 15.39 -3.04 -0.05 -15.85 16 19 C -0.13 -1.18 4.04 29.85 0.12 -1.06 16 20 C -0.10 -1.16 4.46 30.59 0.14 -1.02 16 21 C -0.08 -0.68 5.50 30.60 0.17 -0.51 16 22 C -0.16 -1.76 5.74 -10.79 -0.06 -1.82 16 23 C -0.19 -1.89 10.18 30.59 0.31 -1.57 16 24 C -0.18 -1.66 10.25 30.59 0.31 -1.35 16 25 C 0.09 0.97 6.54 86.58 0.57 1.53 16 26 C 0.08 1.21 6.52 86.57 0.56 1.77 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 28 H 0.11 3.64 7.72 -2.40 -0.02 3.62 16 29 H 0.11 3.62 7.91 -2.40 -0.02 3.60 16 30 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 2.37 7.00 -2.39 -0.02 2.35 16 32 H 0.10 2.13 6.99 -2.39 -0.02 2.12 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.12 0.46 7.73 -2.38 -0.02 0.44 16 35 H 0.12 0.52 7.90 -2.39 -0.02 0.50 16 36 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 37 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.07 0.49 7.87 -2.39 -0.02 0.47 16 40 H 0.09 1.18 8.07 -2.39 -0.02 1.16 16 41 H 0.10 0.87 8.03 -2.39 -0.02 0.86 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.14 0.34 5.91 -2.39 -0.01 0.33 16 47 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.11 1.46 5.91 -2.39 -0.01 1.45 16 Total: -1.00 -81.45 401.04 3.23 -78.22 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.94 Total: 14.86 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.04 Total: -1.09 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -4.52 Total: -84.78 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.09 Total: -41.72 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -81.45 3.23 -78.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522427328.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.129 kcal (2) G-P(sol) polarization free energy of solvation -81.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds