Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29022 * 126.43521 * 2 1 4 4 N 1.28738 * 108.80537 * 180.02562 * 3 2 1 5 5 N 1.28840 * 109.39828 * 359.76360 * 4 3 2 6 6 C 1.31072 * 107.99168 * 0.37806 * 5 4 3 7 7 C 1.50697 * 126.66038 * 179.89060 * 6 5 4 8 8 N 1.46891 * 109.47596 * 269.69157 * 7 6 5 9 9 C 1.46908 * 111.00191 * 183.50217 * 8 7 6 10 10 H 1.09006 * 109.46886 * 184.30469 * 9 8 7 11 11 C 1.52994 * 109.47146 * 64.30102 * 9 8 7 12 12 N 1.46500 * 109.47215 * 55.00181 * 11 9 8 13 13 C 1.34776 * 119.99999 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00190 * 179.97438 * 13 12 11 16 16 S 1.80994 * 109.47463 * 180.02562 * 15 13 12 17 17 C 1.76203 * 100.00321 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99346 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47115 * 89.99766 * 21 19 17 23 23 H 1.48499 * 109.47196 * 210.00214 * 21 19 17 24 24 H 1.48507 * 109.47229 * 330.00075 * 21 19 17 25 25 C 1.52999 * 109.46790 * 304.29868 * 9 8 7 26 26 C 1.52990 * 117.50009 * 225.69649 * 25 9 8 27 27 C 1.52993 * 117.50166 * 294.35847 * 25 9 8 28 28 H 1.09000 * 109.46912 * 269.97472 * 1 2 3 29 29 H 1.08990 * 109.47604 * 29.97698 * 1 2 3 30 30 H 1.09004 * 109.47592 * 149.98051 * 1 2 3 31 31 H 1.09001 * 109.46752 * 149.68747 * 7 6 5 32 32 H 1.09003 * 109.47072 * 29.68956 * 7 6 5 33 33 H 1.00904 * 111.00169 * 307.44990 * 8 7 6 34 34 H 1.09000 * 109.46823 * 175.00225 * 11 9 8 35 35 H 1.08994 * 109.47537 * 295.00244 * 11 9 8 36 36 H 0.96994 * 120.00122 * 0.02562 * 12 11 9 37 37 H 1.09000 * 109.47295 * 300.00609 * 15 13 12 38 38 H 1.09003 * 109.47141 * 60.00268 * 15 13 12 39 39 H 0.96993 * 120.00055 * 180.02562 * 20 19 17 40 40 H 1.09004 * 115.54792 * 80.02381 * 25 9 8 41 41 H 1.09003 * 117.50087 * 215.00759 * 26 25 9 42 42 H 1.09002 * 117.50065 * 0.02562 * 26 25 9 43 43 H 1.09005 * 117.50146 * 359.97202 * 27 25 9 44 44 H 1.09001 * 117.50425 * 144.99742 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0380 0.0000 4 7 3.4582 0.6481 -0.0005 5 7 3.4980 -0.6397 0.0041 6 6 2.2644 -1.0828 -0.0005 7 6 1.8264 -2.5247 0.0000 8 7 1.6829 -2.9935 -1.3847 9 6 1.1765 -4.3719 -1.4241 10 1 1.1520 -4.7206 -2.4566 11 6 -0.2362 -4.4132 -0.8382 12 7 -1.0883 -3.4574 -1.5499 13 6 -2.3834 -3.3208 -1.2030 14 8 -2.8434 -3.9888 -0.3013 15 6 -3.2598 -2.3371 -1.9348 16 16 -4.9311 -2.3861 -1.2417 17 6 -5.7176 -1.1770 -2.2537 18 1 -5.1551 -0.6673 -3.0219 19 6 -7.0597 -0.8788 -2.0628 20 7 -7.7451 -1.4998 -1.1260 21 14 -7.8933 0.4035 -3.1351 22 1 -8.4662 -0.2533 -4.3374 23 1 -8.9796 1.0618 -2.3657 24 1 -6.8968 1.4215 -3.5547 25 6 2.0964 -5.2768 -0.6020 26 6 2.5088 -6.6139 -1.2205 27 6 3.5266 -5.4763 -1.1071 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 0.8696 -2.6135 0.5147 32 1 2.5728 -3.1310 0.5133 33 1 1.0888 -2.3748 -1.9162 34 1 -0.6459 -5.4173 -0.9482 35 1 -0.1990 -4.1498 0.2188 36 1 -0.7205 -2.9234 -2.2713 37 1 -2.8502 -1.3331 -1.8241 38 1 -3.2967 -2.5999 -2.9920 39 1 -8.6830 -1.2917 -0.9928 40 1 1.9432 -5.2472 0.4768 41 1 2.6270 -7.4641 -0.5487 42 1 2.1252 -6.8489 -2.2134 43 1 3.8123 -4.9633 -2.0255 44 1 4.3145 -5.5780 -0.3608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566702648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = 113.944659 kcal Electronic energy + Delta-G solvation = -27175.200239 eV Core-core repulsion = 23292.851175 eV Total energy + Delta-G solvation = -3882.349063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.41342 -40.04994 -38.66705 -36.28736 -35.72068 -34.40425 -32.61517 -32.54605 -30.31228 -29.04942 -28.26165 -26.43300 -25.59973 -23.73649 -23.51582 -22.63582 -22.39173 -20.66048 -20.08812 -18.08975 -17.85186 -17.53031 -17.02759 -16.70456 -16.31398 -15.91284 -15.63005 -14.92835 -14.91297 -14.54810 -14.26594 -14.21650 -14.05805 -13.91450 -13.88304 -13.31300 -12.99499 -12.75296 -12.57633 -12.48090 -12.26898 -11.92224 -11.81562 -11.51886 -11.36521 -11.17344 -11.13920 -11.12332 -10.88041 -10.69671 -10.66283 -10.33732 -9.95262 -9.67248 -9.25707 -9.17129 -9.09703 -8.40031 -6.65543 -6.33929 -4.06272 0.92268 1.68786 1.97955 2.74244 2.81700 3.13991 3.15356 3.21534 3.27069 3.49277 3.52406 3.82852 3.89787 4.08373 4.12677 4.32919 4.40849 4.56934 4.63256 4.71847 4.76878 4.86000 4.91297 4.95182 5.01400 5.01767 5.03463 5.18513 5.37574 5.37813 5.42015 5.47357 5.58527 5.62966 5.64884 5.77886 5.82090 5.88830 5.91499 6.15907 6.30277 6.59309 7.33852 7.47557 8.22578 8.31915 8.37396 9.11815 10.73319 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.002913 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.331384 B = 9610.397789 C =11628.567573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.303 5.303 3 N -0.092 5.092 4 N -0.080 5.080 5 N -0.286 5.286 6 C 0.183 3.817 7 C 0.137 3.863 8 N -0.666 5.666 9 C 0.111 3.889 10 H 0.100 0.900 11 C 0.085 3.915 12 N -0.746 5.746 13 C 0.531 3.469 14 O -0.509 6.509 15 C -0.156 4.156 16 S -0.057 6.057 17 C -0.539 4.539 18 H 0.073 0.927 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.918 3.082 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.272 1.272 25 C -0.156 4.156 26 C -0.175 4.175 27 C -0.156 4.156 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.340 0.660 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.393 0.607 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.270 0.730 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.970 -5.381 -0.092 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.106 5.106 3 N -0.078 5.078 4 N -0.073 5.073 5 N -0.136 5.136 6 C -0.096 4.096 7 C 0.005 3.995 8 N -0.298 5.298 9 C 0.002 3.998 10 H 0.118 0.882 11 C -0.041 4.041 12 N -0.402 5.402 13 C 0.317 3.683 14 O -0.382 6.382 15 C -0.306 4.306 16 S 0.170 5.830 17 C -0.687 4.687 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.501 5.501 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.175 4.175 26 C -0.212 4.212 27 C -0.193 4.193 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.227 0.773 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.653 -5.671 1.477 21.468 hybrid contribution -1.767 1.441 -1.840 2.930 sum 18.885 -4.230 -0.363 19.357 Atomic orbital electron populations 1.22520 0.70910 1.06862 1.06456 1.48518 1.10879 1.04327 1.46835 1.78927 0.97947 1.12686 1.18219 1.78651 1.09712 1.03849 1.15124 1.75017 1.17550 1.03324 1.17661 1.25914 0.86855 0.93846 1.02945 1.20458 1.02018 0.84710 0.92284 1.60691 1.54961 1.03232 1.10906 1.21469 0.90241 0.87625 1.00495 0.88203 1.22010 0.90378 0.94815 0.96923 1.46109 1.10974 1.43893 1.39241 1.20367 0.81141 0.83341 0.83469 1.90734 1.72871 1.45009 1.29572 1.23555 1.03634 0.99843 1.03606 1.85454 0.96155 1.54369 1.47042 1.22842 0.98138 1.25752 1.21941 0.90904 1.24991 0.96242 0.96647 0.95584 1.70004 1.09309 1.40327 1.30491 0.86172 0.78993 0.80541 0.79838 1.20204 1.20688 1.19660 1.22098 0.97645 0.98592 0.99124 1.23022 1.03951 0.91837 1.02396 1.22857 0.91479 1.01375 1.03580 0.87752 0.86707 0.88117 0.91613 0.86199 0.84085 0.90294 0.91190 0.77280 0.89458 0.89083 0.92060 0.87515 0.88597 0.88616 0.88079 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 11.09 59.85 0.66 1.15 16 2 N -0.30 -2.96 3.75 -65.03 -0.24 -3.21 16 3 N -0.09 -1.17 13.29 60.35 0.80 -0.37 16 4 N -0.08 -1.14 13.43 60.35 0.81 -0.32 16 5 N -0.29 -3.71 12.36 32.70 0.40 -3.31 16 6 C 0.18 1.81 7.61 -155.43 -1.18 0.63 16 7 C 0.14 0.95 5.16 -4.98 -0.03 0.92 16 8 N -0.67 -4.17 6.42 -107.99 -0.69 -4.87 16 9 C 0.11 0.65 2.90 -67.71 -0.20 0.46 16 10 H 0.10 0.57 7.95 -51.93 -0.41 0.16 16 11 C 0.08 0.68 4.80 -4.04 -0.02 0.67 16 12 N -0.75 -6.97 5.31 -60.30 -0.32 -7.29 16 13 C 0.53 7.98 7.85 -10.99 -0.09 7.90 16 14 O -0.51 -9.94 15.86 5.56 0.09 -9.85 16 15 C -0.16 -2.65 6.16 36.01 0.22 -2.43 16 16 S -0.06 -1.40 20.57 -107.50 -2.21 -3.62 16 17 C -0.54 -14.32 9.50 30.94 0.29 -14.03 16 18 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 19 C 0.08 2.03 5.49 -17.43 -0.10 1.94 16 20 N -0.87 -24.94 13.22 55.49 0.73 -24.21 16 21 Si 0.92 20.41 29.55 -169.99 -5.02 15.38 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 C -0.16 -0.89 3.77 -90.63 -0.34 -1.23 16 26 C -0.17 -0.96 10.18 -26.70 -0.27 -1.23 16 27 C -0.16 -0.92 10.22 -26.70 -0.27 -1.19 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.56 7.75 -51.93 -0.40 0.16 16 31 H 0.07 0.41 6.03 -51.93 -0.31 0.10 16 32 H 0.12 0.80 6.95 -51.93 -0.36 0.44 16 33 H 0.34 1.99 7.08 -39.29 -0.28 1.71 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.61 6.68 -51.93 -0.35 0.26 16 36 H 0.39 2.65 7.12 -40.82 -0.29 2.36 16 37 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 38 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 40 H 0.11 0.59 7.86 -51.93 -0.41 0.18 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 386.56 15.07 5.83 5.83 Total: -1.00 -35.02 386.56 -7.30 -42.32 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.16 Total: -0.04 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.31 Total: -6.45 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 1.49 Total: -43.57 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.21 Total: -3.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.02 -7.30 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566702648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.267 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds