Wall clock time and date at job start Sat Apr 11 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.29022 * 126.43521 * 2 1 4 4 N 1.28738 * 108.80537 * 180.02562 * 3 2 1 5 5 N 1.28840 * 109.39828 * 359.76360 * 4 3 2 6 6 C 1.31072 * 107.99168 * 0.37806 * 5 4 3 7 7 C 1.50697 * 126.66038 * 179.89060 * 6 5 4 8 8 N 1.46891 * 109.47596 * 269.69157 * 7 6 5 9 9 C 1.46908 * 111.00191 * 183.50217 * 8 7 6 10 10 H 1.09006 * 109.46886 * 184.30469 * 9 8 7 11 11 C 1.52994 * 109.47146 * 64.30102 * 9 8 7 12 12 N 1.46500 * 109.47215 * 55.00181 * 11 9 8 13 13 C 1.34776 * 119.99999 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00136 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00190 * 179.97438 * 13 12 11 16 16 S 1.80994 * 109.47463 * 180.02562 * 15 13 12 17 17 C 1.76203 * 100.00321 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99346 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00014 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47115 * 89.99766 * 21 19 17 23 23 H 1.48499 * 109.47196 * 210.00214 * 21 19 17 24 24 H 1.48507 * 109.47229 * 330.00075 * 21 19 17 25 25 C 1.52999 * 109.46790 * 304.29868 * 9 8 7 26 26 C 1.52990 * 117.50009 * 225.69649 * 25 9 8 27 27 C 1.52993 * 117.50166 * 294.35847 * 25 9 8 28 28 H 1.09000 * 109.46912 * 269.97472 * 1 2 3 29 29 H 1.08990 * 109.47604 * 29.97698 * 1 2 3 30 30 H 1.09004 * 109.47592 * 149.98051 * 1 2 3 31 31 H 1.09001 * 109.46752 * 149.68747 * 7 6 5 32 32 H 1.09003 * 109.47072 * 29.68956 * 7 6 5 33 33 H 1.00904 * 111.00169 * 307.44990 * 8 7 6 34 34 H 1.09000 * 109.46823 * 175.00225 * 11 9 8 35 35 H 1.08994 * 109.47537 * 295.00244 * 11 9 8 36 36 H 0.96994 * 120.00122 * 0.02562 * 12 11 9 37 37 H 1.09000 * 109.47295 * 300.00609 * 15 13 12 38 38 H 1.09003 * 109.47141 * 60.00268 * 15 13 12 39 39 H 0.96993 * 120.00055 * 180.02562 * 20 19 17 40 40 H 1.09004 * 115.54792 * 80.02381 * 25 9 8 41 41 H 1.09003 * 117.50087 * 215.00759 * 26 25 9 42 42 H 1.09002 * 117.50065 * 0.02562 * 26 25 9 43 43 H 1.09005 * 117.50146 * 359.97202 * 27 25 9 44 44 H 1.09001 * 117.50425 * 144.99742 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0380 0.0000 4 7 3.4582 0.6481 -0.0005 5 7 3.4980 -0.6397 0.0041 6 6 2.2644 -1.0828 -0.0005 7 6 1.8264 -2.5247 0.0000 8 7 1.6829 -2.9935 -1.3847 9 6 1.1765 -4.3719 -1.4241 10 1 1.1520 -4.7206 -2.4566 11 6 -0.2362 -4.4132 -0.8382 12 7 -1.0883 -3.4574 -1.5499 13 6 -2.3834 -3.3208 -1.2030 14 8 -2.8434 -3.9888 -0.3013 15 6 -3.2598 -2.3371 -1.9348 16 16 -4.9311 -2.3861 -1.2417 17 6 -5.7176 -1.1770 -2.2537 18 1 -5.1551 -0.6673 -3.0219 19 6 -7.0597 -0.8788 -2.0628 20 7 -7.7451 -1.4998 -1.1260 21 14 -7.8933 0.4035 -3.1351 22 1 -8.4662 -0.2533 -4.3374 23 1 -8.9796 1.0618 -2.3657 24 1 -6.8968 1.4215 -3.5547 25 6 2.0964 -5.2768 -0.6020 26 6 2.5088 -6.6139 -1.2205 27 6 3.5266 -5.4763 -1.1071 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 0.8696 -2.6135 0.5147 32 1 2.5728 -3.1310 0.5133 33 1 1.0888 -2.3748 -1.9162 34 1 -0.6459 -5.4173 -0.9482 35 1 -0.1990 -4.1498 0.2188 36 1 -0.7205 -2.9234 -2.2713 37 1 -2.8502 -1.3331 -1.8241 38 1 -3.2967 -2.5999 -2.9920 39 1 -8.6830 -1.2917 -0.9928 40 1 1.9432 -5.2472 0.4768 41 1 2.6270 -7.4641 -0.5487 42 1 2.1252 -6.8489 -2.2134 43 1 3.8123 -4.9633 -2.0255 44 1 4.3145 -5.5780 -0.3608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566702648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:57 Heat of formation + Delta-G solvation = 87.121035 kcal Electronic energy + Delta-G solvation = -27176.363398 eV Core-core repulsion = 23292.851175 eV Total energy + Delta-G solvation = -3883.512223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.27580 -40.95712 -39.51339 -36.95107 -36.45174 -35.33328 -34.56661 -33.46453 -31.40607 -29.83058 -29.07658 -27.66389 -27.08192 -24.57867 -24.20536 -23.23587 -22.99530 -21.71472 -20.68227 -19.83333 -18.57256 -18.33012 -17.97771 -17.60349 -17.33536 -16.86434 -16.73870 -16.38342 -15.87938 -15.71361 -15.14824 -15.03490 -14.84131 -14.71776 -14.59887 -14.45703 -14.22443 -13.80303 -13.42398 -13.32554 -13.14534 -13.03485 -12.92751 -12.84881 -12.60376 -12.26766 -12.23179 -12.06398 -11.90973 -11.72422 -11.32663 -11.17823 -11.13441 -11.01137 -10.88612 -10.23649 -10.19129 -9.65050 -8.63439 -8.33929 -6.10320 0.11090 0.98943 1.07175 1.28276 1.42234 1.48239 1.56923 1.61242 2.18195 2.28713 2.69924 2.93096 3.01070 3.14724 3.31658 3.36921 3.57213 3.75448 3.83112 3.98799 4.07259 4.13944 4.19210 4.23962 4.28516 4.32328 4.35855 4.42279 4.49778 4.51132 4.55227 4.70453 4.76820 4.91461 4.96534 5.09982 5.19552 5.30467 5.37290 5.43809 5.44045 5.67331 6.08725 6.20999 6.41341 7.08876 7.21566 7.48038 8.74665 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011151 B = 0.002913 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.331384 B = 9610.397789 C =11628.567573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.295 5.295 3 N -0.108 5.108 4 N -0.110 5.110 5 N -0.312 5.312 6 C 0.193 3.807 7 C 0.142 3.858 8 N -0.666 5.666 9 C 0.127 3.873 10 H 0.110 0.890 11 C 0.087 3.913 12 N -0.716 5.716 13 C 0.538 3.462 14 O -0.558 6.558 15 C -0.134 4.134 16 S -0.147 6.147 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.016 3.984 20 N -0.910 5.910 21 Si 0.991 3.009 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.257 1.257 25 C -0.158 4.158 26 C -0.173 4.173 27 C -0.157 4.157 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.411 0.589 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.270 0.730 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.853 -5.173 -1.560 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.098 5.098 3 N -0.094 5.094 4 N -0.104 5.104 5 N -0.162 5.162 6 C -0.086 4.086 7 C 0.010 3.990 8 N -0.298 5.298 9 C 0.018 3.982 10 H 0.128 0.872 11 C -0.039 4.039 12 N -0.372 5.372 13 C 0.324 3.676 14 O -0.435 6.435 15 C -0.285 4.285 16 S 0.080 5.920 17 C -0.691 4.691 18 H 0.102 0.898 19 C -0.189 4.189 20 N -0.547 5.547 21 Si 0.814 3.186 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.181 1.181 25 C -0.177 4.177 26 C -0.210 4.210 27 C -0.194 4.194 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.248 0.752 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 21.586 -5.451 -0.030 22.264 hybrid contribution -1.936 1.291 -1.390 2.711 sum 19.649 -4.160 -1.420 20.135 Atomic orbital electron populations 1.22846 0.69089 1.08043 1.07549 1.48709 1.11721 1.03675 1.45672 1.78852 0.97971 1.13835 1.18752 1.78622 1.10561 1.04631 1.16549 1.74942 1.19358 1.03089 1.18839 1.26320 0.86125 0.94782 1.01374 1.20555 1.02667 0.82922 0.92824 1.60672 1.55196 1.03433 1.10529 1.21365 0.88591 0.87419 1.00862 0.87215 1.22118 0.91033 0.93740 0.96969 1.45753 1.09026 1.43434 1.38968 1.19986 0.82444 0.82483 0.82678 1.90734 1.74160 1.46842 1.31806 1.23412 0.98821 1.02383 1.03863 1.85621 1.02628 1.54791 1.48935 1.23199 0.98596 1.25524 1.21821 0.89822 1.26031 0.97151 0.98849 0.96896 1.70167 1.09597 1.42337 1.32605 0.85049 0.77916 0.77880 0.77766 1.19657 1.20657 1.18065 1.22118 0.97450 0.98770 0.99367 1.23077 1.03483 0.91826 1.02645 1.22828 0.91564 1.01636 1.03380 0.86741 0.85778 0.86679 0.90390 0.85688 0.83540 0.91263 0.91184 0.75188 0.86461 0.87519 0.92114 0.87121 0.88223 0.88280 0.88665 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 11.09 127.77 1.42 2.11 16 2 N -0.29 -5.27 3.75 -359.66 -1.35 -6.62 16 3 N -0.11 -2.67 13.29 37.02 0.49 -2.18 16 4 N -0.11 -3.11 13.43 37.01 0.50 -2.62 16 5 N -0.31 -7.88 12.36 -50.45 -0.62 -8.51 16 6 C 0.19 3.49 7.61 138.13 1.05 4.54 16 7 C 0.14 1.61 5.16 85.56 0.44 2.05 16 8 N -0.67 -6.37 6.42 -495.59 -3.18 -9.55 16 9 C 0.13 1.11 2.90 44.91 0.13 1.24 16 10 H 0.11 0.86 7.95 -2.38 -0.02 0.84 16 11 C 0.09 1.17 4.80 86.38 0.41 1.59 16 12 N -0.72 -11.15 5.31 -463.08 -2.46 -13.61 16 13 C 0.54 15.09 7.85 87.66 0.69 15.78 16 14 O -0.56 -21.47 15.86 -3.04 -0.05 -21.52 16 15 C -0.13 -4.25 6.16 71.24 0.44 -3.81 16 16 S -0.15 -7.31 20.57 -56.49 -1.16 -8.48 16 17 C -0.54 -28.60 9.50 67.95 0.65 -27.95 16 18 H 0.08 4.05 7.80 -2.91 -0.02 4.02 16 19 C 0.02 0.84 5.49 84.86 0.47 1.31 16 20 N -0.91 -53.30 13.22 21.65 0.29 -53.02 16 21 Si 0.99 41.32 29.55 68.60 2.03 43.35 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 25 C -0.16 -1.42 3.77 -10.80 -0.04 -1.46 16 26 C -0.17 -1.53 10.18 30.61 0.31 -1.22 16 27 C -0.16 -1.54 10.22 30.61 0.31 -1.22 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 0.89 7.75 -2.38 -0.02 0.87 16 31 H 0.08 0.73 6.03 -2.39 -0.01 0.72 16 32 H 0.13 1.37 6.95 -2.39 -0.02 1.35 16 33 H 0.34 2.79 7.08 -89.69 -0.64 2.15 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.02 6.68 -2.39 -0.02 1.01 16 36 H 0.41 3.83 7.12 -92.71 -0.66 3.17 16 37 H 0.12 3.04 8.14 -2.40 -0.02 3.02 16 38 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.11 0.95 7.86 -2.39 -0.02 0.93 16 41 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.82 8.08 -2.39 -0.02 0.80 16 43 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -78.63 386.56 0.51 -78.11 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -0.25 Total: 11.67 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 6.28 Total: -7.03 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -6.33 Total: -96.10 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: -7.31 SS G_CDS: -1.16 Total: -8.48 kcal Total: -78.63 0.51 -78.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566702648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.234 kcal (2) G-P(sol) polarization free energy of solvation -78.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds