Wall clock time and date at job start Sat Apr 11 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 120.00079 * 2 1 4 4 H 1.08002 * 119.99501 * 151.33270 * 3 2 1 5 5 C 1.38807 * 120.00514 * 331.61281 * 3 2 1 6 6 N 1.31622 * 119.99530 * 344.79204 * 5 3 2 7 7 Si 1.86798 * 120.00341 * 164.78675 * 5 3 2 8 8 H 1.48503 * 109.46754 * 60.00147 * 7 5 3 9 9 H 1.48500 * 109.46849 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46980 * 300.00143 * 7 5 3 11 11 C 1.46502 * 119.99606 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47075 * 269.99890 * 11 2 1 13 13 H 1.09001 * 109.49422 * 305.00103 * 12 11 2 14 14 C 1.53042 * 109.49747 * 184.93588 * 12 11 2 15 15 C 1.53035 * 109.53873 * 178.68063 * 14 12 11 16 16 C 1.53190 * 109.31147 * 61.36629 * 15 14 12 17 17 N 1.46922 * 108.77679 * 305.36651 * 16 15 14 18 18 C 1.34776 * 120.63081 * 233.60729 * 17 16 15 19 19 O 1.21579 * 120.00243 * 173.08763 * 18 17 16 20 20 C 1.47671 * 120.00111 * 353.09093 * 18 17 16 21 21 N 1.31822 * 126.45967 * 354.01848 * 20 18 17 22 22 N 1.28468 * 110.13752 * 180.02562 * 21 20 18 23 23 C 1.46504 * 124.93468 * 179.97438 * 22 21 20 24 24 C 1.35645 * 110.13101 * 359.97438 * 22 21 20 25 25 C 1.35464 * 107.12739 * 359.72848 * 24 22 21 26 26 Cl 1.73607 * 127.23453 * 180.25463 * 25 24 22 27 27 C 1.46934 * 118.76884 * 53.58512 * 17 16 15 28 28 H 1.08996 * 109.47312 * 87.94968 * 1 2 3 29 29 H 1.08992 * 109.47352 * 207.95833 * 1 2 3 30 30 H 1.09003 * 109.46613 * 327.95343 * 1 2 3 31 31 H 0.97003 * 119.99946 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47199 * 30.00315 * 11 2 1 33 33 H 1.08999 * 109.46847 * 149.99841 * 11 2 1 34 34 H 1.08989 * 109.46031 * 298.70754 * 14 12 11 35 35 H 1.09007 * 109.45855 * 58.66038 * 14 12 11 36 36 H 1.09003 * 109.50055 * 181.31696 * 15 14 12 37 37 H 1.09000 * 109.50095 * 301.41585 * 15 14 12 38 38 H 1.08998 * 109.58900 * 65.15169 * 16 15 14 39 39 H 1.08999 * 109.59090 * 185.43189 * 16 15 14 40 40 H 1.08998 * 109.46973 * 90.02623 * 23 22 21 41 41 H 1.09002 * 109.46731 * 210.02225 * 23 22 21 42 42 H 1.08996 * 109.47218 * 330.02206 * 23 22 21 43 43 H 1.07998 * 126.43553 * 179.97438 * 24 22 21 44 44 H 1.08991 * 109.61854 * 186.64461 * 27 17 16 45 45 H 1.09001 * 109.55890 * 66.21513 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1304 1.2431 0.4487 5 6 1.5810 2.3158 -0.5715 6 7 0.5391 2.1974 -1.3670 7 14 2.2941 4.0043 -0.2115 8 1 3.7094 4.0496 -0.6591 9 1 1.5124 5.0369 -0.9380 10 1 2.2279 4.2686 1.2482 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 1 2.9642 -0.9143 1.9815 14 6 3.3225 -2.9701 1.4437 15 6 3.6055 -3.3945 2.8865 16 6 2.2828 -3.7198 3.5875 17 7 1.3850 -2.5634 3.4637 18 6 0.8184 -2.0139 4.5561 19 8 0.1797 -0.9842 4.4569 20 6 0.9733 -2.6625 5.8737 21 7 1.5394 -3.8292 6.1108 22 7 1.5034 -4.0908 7.3680 23 6 2.0411 -5.3044 7.9881 24 6 0.8952 -3.0803 8.0380 25 6 0.5476 -2.1459 7.1208 26 17 -0.2557 -0.6349 7.4131 27 6 1.1166 -2.0165 2.1266 28 1 -0.3634 0.0368 -1.0270 29 1 -0.3633 -0.9076 0.4818 30 1 -0.3633 0.8711 0.5453 31 1 0.1418 2.9869 -1.7667 32 1 1.6084 -2.0282 -0.5148 33 1 3.1498 -1.1383 -0.5144 34 1 2.7999 -3.7735 0.9247 35 1 4.2639 -2.7617 0.9352 36 1 4.2445 -4.2776 2.8874 37 1 4.1062 -2.5821 3.4132 38 1 1.8246 -4.5901 3.1177 39 1 2.4693 -3.9292 4.6409 40 1 3.0824 -5.1401 8.2651 41 1 1.4615 -5.5443 8.8796 42 1 1.9794 -6.1316 7.2811 43 1 0.7241 -3.0284 9.1031 44 1 0.5340 -1.0998 2.2164 45 1 0.5628 -2.7477 1.5377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566739506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:02 Heat of formation + Delta-G solvation = 77.760696 kcal Electronic energy + Delta-G solvation = -28197.593599 eV Core-core repulsion = 24279.339024 eV Total energy + Delta-G solvation = -3918.254575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.99598 -39.69862 -37.40097 -36.54451 -35.37209 -33.82211 -32.78534 -31.58194 -30.98441 -29.92384 -28.04381 -26.25376 -25.36205 -25.19251 -22.70625 -22.38168 -21.79334 -20.74543 -19.81779 -19.10515 -17.51135 -16.87431 -16.70315 -16.42662 -15.60266 -14.91708 -14.83424 -14.80732 -14.38707 -14.24321 -13.74437 -13.58379 -13.48142 -13.29105 -13.19397 -13.08901 -12.69268 -12.44082 -12.28096 -11.97741 -11.88578 -11.36154 -11.14096 -10.83899 -10.79977 -10.74386 -10.55692 -10.50886 -10.25255 -10.06158 -9.84837 -9.80027 -9.71666 -9.64937 -9.49334 -9.00962 -8.39694 -8.24998 -6.51284 -5.59966 -3.09807 1.29552 1.66887 1.69232 2.45059 3.20790 3.45491 3.48561 3.53671 3.56912 4.03613 4.32258 4.49940 4.56178 4.62153 4.83498 4.88930 5.04291 5.11085 5.16609 5.28605 5.46443 5.54188 5.55930 5.62389 5.84409 5.87801 5.94321 6.05424 6.20510 6.24264 6.28635 6.37133 6.41061 6.53901 6.66205 6.86354 6.90539 6.98317 7.10433 7.43710 7.47025 7.70339 7.81936 7.94491 8.41322 8.57467 9.37141 10.00847 10.52910 11.44417 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003375 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.151044 B = 8294.293589 C = 9639.922460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.597 5.597 3 C -0.255 4.255 4 H 0.062 0.938 5 C 0.007 3.993 6 N -0.903 5.903 7 Si 0.900 3.100 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.159 3.841 12 C -0.121 4.121 13 H 0.073 0.927 14 C -0.114 4.114 15 C -0.132 4.132 16 C 0.088 3.912 17 N -0.596 5.596 18 C 0.591 3.409 19 O -0.509 6.509 20 C 0.012 3.988 21 N -0.249 5.249 22 N -0.287 5.287 23 C 0.088 3.912 24 C -0.002 4.002 25 C -0.103 4.103 26 Cl -0.006 7.006 27 C 0.123 3.877 28 H 0.026 0.974 29 H 0.003 0.997 30 H 0.038 0.962 31 H 0.252 0.748 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.191 0.809 44 H 0.106 0.894 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 -19.768 20.840 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.320 5.320 3 C -0.385 4.385 4 H 0.080 0.920 5 C -0.192 4.192 6 N -0.547 5.547 7 Si 0.729 3.271 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.031 3.969 12 C -0.143 4.143 13 H 0.091 0.909 14 C -0.152 4.152 15 C -0.170 4.170 16 C -0.036 4.036 17 N -0.329 5.329 18 C 0.375 3.625 19 O -0.382 6.382 20 C -0.149 4.149 21 N -0.084 5.084 22 N -0.075 5.075 23 C -0.052 4.052 24 C -0.146 4.146 25 C -0.141 4.141 26 Cl 0.023 6.977 27 C 0.002 3.998 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.208 0.792 44 H 0.124 0.876 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.492 -19.937 20.233 28.620 hybrid contribution 0.003 1.601 0.700 1.747 sum 3.495 -18.337 20.934 28.048 Atomic orbital electron populations 1.20832 0.83095 0.96114 0.98726 1.43793 1.01520 1.00645 1.85998 1.19027 1.01758 0.86736 1.30965 0.92014 1.25072 0.98545 0.98647 0.96954 1.70046 1.24872 1.28133 1.31649 0.86420 0.78302 0.84334 0.78003 1.20980 1.21710 1.20985 1.20719 0.96295 0.88463 0.91405 1.22258 0.94800 0.96468 1.00819 0.90884 1.21557 1.00100 0.98065 0.95483 1.21902 0.96787 1.01204 0.97101 1.22368 0.89654 0.87463 1.04077 1.48021 1.46114 1.31953 1.06827 1.16903 0.80344 0.83725 0.81523 1.90886 1.41070 1.21770 1.84447 1.22103 1.04342 0.93148 0.95270 1.73536 1.20141 1.16739 0.98003 1.45564 1.41238 1.16496 1.04164 1.22241 1.00446 0.83380 0.99131 1.22611 1.03056 0.89412 0.99562 1.20861 1.07227 0.93108 0.92855 1.98383 1.77102 1.26550 1.95655 1.21889 0.98136 0.99933 0.79797 0.95531 0.97885 0.94323 0.93804 0.94717 0.93148 0.92268 0.91935 0.91451 0.91956 0.92061 0.86458 0.89370 0.88392 0.88181 0.79215 0.87607 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.06 8.10 59.85 0.48 4.54 16 2 N -0.60 -15.58 2.74 -181.12 -0.50 -16.08 16 3 C -0.25 -7.34 9.57 -15.06 -0.14 -7.48 16 4 H 0.06 1.75 7.87 -52.49 -0.41 1.34 16 5 C 0.01 0.20 5.03 -17.43 -0.09 0.11 16 6 N -0.90 -27.53 11.21 55.49 0.62 -26.91 16 7 Si 0.90 22.99 29.58 -169.99 -5.03 17.97 16 8 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 10 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 11 C 0.16 3.35 5.15 -4.04 -0.02 3.33 16 12 C -0.12 -2.21 2.54 -90.50 -0.23 -2.44 16 13 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.11 -1.60 5.17 -26.69 -0.14 -1.74 16 15 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 16 C 0.09 1.13 6.11 -3.71 -0.02 1.11 16 17 N -0.60 -9.89 2.97 -173.95 -0.52 -10.40 16 18 C 0.59 10.66 7.69 -12.41 -0.10 10.57 16 19 O -0.51 -11.02 15.32 5.30 0.08 -10.94 16 20 C 0.01 0.18 6.83 -82.76 -0.57 -0.39 16 21 N -0.25 -2.89 8.43 33.42 0.28 -2.60 16 22 N -0.29 -2.34 3.72 -67.94 -0.25 -2.59 16 23 C 0.09 0.23 11.32 59.85 0.68 0.91 16 24 C 0.00 -0.02 11.49 -16.86 -0.19 -0.21 16 25 C -0.10 -1.34 6.80 -39.31 -0.27 -1.60 16 26 Cl -0.01 -0.08 28.20 -51.86 -1.46 -1.54 16 27 C 0.12 2.27 4.45 -3.71 -0.02 2.26 16 28 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 29 H 0.00 0.06 6.14 -51.93 -0.32 -0.26 16 30 H 0.04 1.08 7.55 -51.93 -0.39 0.69 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.06 0.77 8.14 -51.94 -0.42 0.35 16 35 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.12 1.43 4.15 -73.36 -0.30 1.12 16 40 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.10 0.00 8.13 -51.93 -0.42 -0.42 16 42 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.11 2.35 5.29 -51.93 -0.27 2.08 16 45 H 0.06 1.02 8.11 -51.93 -0.42 0.59 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -35.97 372.11 -8.65 -44.62 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -6.71 Total: -4.29 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.78 Total: 7.17 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.36 Total: -58.59 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.97 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.46 Total: -1.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.97 -8.65 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566739506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.385 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds