Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 120.00079 * 2 1 4 4 H 1.08002 * 119.99501 * 151.33270 * 3 2 1 5 5 C 1.38807 * 120.00514 * 331.61281 * 3 2 1 6 6 N 1.31622 * 119.99530 * 344.79204 * 5 3 2 7 7 Si 1.86798 * 120.00341 * 164.78675 * 5 3 2 8 8 H 1.48503 * 109.46754 * 60.00147 * 7 5 3 9 9 H 1.48500 * 109.46849 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46980 * 300.00143 * 7 5 3 11 11 C 1.46502 * 119.99606 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47075 * 269.99890 * 11 2 1 13 13 H 1.09001 * 109.49422 * 305.00103 * 12 11 2 14 14 C 1.53042 * 109.49747 * 184.93588 * 12 11 2 15 15 C 1.53035 * 109.53873 * 178.68063 * 14 12 11 16 16 C 1.53190 * 109.31147 * 61.36629 * 15 14 12 17 17 N 1.46922 * 108.77679 * 305.36651 * 16 15 14 18 18 C 1.34776 * 120.63081 * 233.60729 * 17 16 15 19 19 O 1.21579 * 120.00243 * 173.08763 * 18 17 16 20 20 C 1.47671 * 120.00111 * 353.09093 * 18 17 16 21 21 N 1.31822 * 126.45967 * 354.01848 * 20 18 17 22 22 N 1.28468 * 110.13752 * 180.02562 * 21 20 18 23 23 C 1.46504 * 124.93468 * 179.97438 * 22 21 20 24 24 C 1.35645 * 110.13101 * 359.97438 * 22 21 20 25 25 C 1.35464 * 107.12739 * 359.72848 * 24 22 21 26 26 Cl 1.73607 * 127.23453 * 180.25463 * 25 24 22 27 27 C 1.46934 * 118.76884 * 53.58512 * 17 16 15 28 28 H 1.08996 * 109.47312 * 87.94968 * 1 2 3 29 29 H 1.08992 * 109.47352 * 207.95833 * 1 2 3 30 30 H 1.09003 * 109.46613 * 327.95343 * 1 2 3 31 31 H 0.97003 * 119.99946 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47199 * 30.00315 * 11 2 1 33 33 H 1.08999 * 109.46847 * 149.99841 * 11 2 1 34 34 H 1.08989 * 109.46031 * 298.70754 * 14 12 11 35 35 H 1.09007 * 109.45855 * 58.66038 * 14 12 11 36 36 H 1.09003 * 109.50055 * 181.31696 * 15 14 12 37 37 H 1.09000 * 109.50095 * 301.41585 * 15 14 12 38 38 H 1.08998 * 109.58900 * 65.15169 * 16 15 14 39 39 H 1.08999 * 109.59090 * 185.43189 * 16 15 14 40 40 H 1.08998 * 109.46973 * 90.02623 * 23 22 21 41 41 H 1.09002 * 109.46731 * 210.02225 * 23 22 21 42 42 H 1.08996 * 109.47218 * 330.02206 * 23 22 21 43 43 H 1.07998 * 126.43553 * 179.97438 * 24 22 21 44 44 H 1.08991 * 109.61854 * 186.64461 * 27 17 16 45 45 H 1.09001 * 109.55890 * 66.21513 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1304 1.2431 0.4487 5 6 1.5810 2.3158 -0.5715 6 7 0.5391 2.1974 -1.3670 7 14 2.2941 4.0043 -0.2115 8 1 3.7094 4.0496 -0.6591 9 1 1.5124 5.0369 -0.9380 10 1 2.2279 4.2686 1.2482 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4417 13 1 2.9642 -0.9143 1.9815 14 6 3.3225 -2.9701 1.4437 15 6 3.6055 -3.3945 2.8865 16 6 2.2828 -3.7198 3.5875 17 7 1.3850 -2.5634 3.4637 18 6 0.8184 -2.0139 4.5561 19 8 0.1797 -0.9842 4.4569 20 6 0.9733 -2.6625 5.8737 21 7 1.5394 -3.8292 6.1108 22 7 1.5034 -4.0908 7.3680 23 6 2.0411 -5.3044 7.9881 24 6 0.8952 -3.0803 8.0380 25 6 0.5476 -2.1459 7.1208 26 17 -0.2557 -0.6349 7.4131 27 6 1.1166 -2.0165 2.1266 28 1 -0.3634 0.0368 -1.0270 29 1 -0.3633 -0.9076 0.4818 30 1 -0.3633 0.8711 0.5453 31 1 0.1418 2.9869 -1.7667 32 1 1.6084 -2.0282 -0.5148 33 1 3.1498 -1.1383 -0.5144 34 1 2.7999 -3.7735 0.9247 35 1 4.2639 -2.7617 0.9352 36 1 4.2445 -4.2776 2.8874 37 1 4.1062 -2.5821 3.4132 38 1 1.8246 -4.5901 3.1177 39 1 2.4693 -3.9292 4.6409 40 1 3.0824 -5.1401 8.2651 41 1 1.4615 -5.5443 8.8796 42 1 1.9794 -6.1316 7.2811 43 1 0.7241 -3.0284 9.1031 44 1 0.5340 -1.0998 2.2164 45 1 0.5628 -2.7477 1.5377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566739506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = 54.134407 kcal Electronic energy + Delta-G solvation = -28198.618112 eV Core-core repulsion = 24279.339024 eV Total energy + Delta-G solvation = -3919.279088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.80722 -41.01040 -38.85667 -37.53523 -37.16588 -34.81581 -34.06877 -33.18959 -31.97141 -31.48319 -28.92485 -28.06614 -27.18751 -26.38161 -24.06384 -23.56742 -22.64041 -22.28185 -21.24183 -20.25875 -18.67444 -18.36677 -17.87342 -17.45648 -16.98960 -16.80608 -16.14643 -15.75715 -15.61135 -15.52904 -15.26351 -14.96613 -14.81591 -14.51155 -14.14482 -14.02071 -13.97060 -13.71776 -13.47175 -13.22324 -13.13548 -12.83853 -12.79166 -12.72435 -12.53109 -12.28275 -12.08518 -11.97214 -11.88850 -11.80330 -11.57408 -11.36810 -11.30050 -10.88415 -10.58986 -10.35748 -9.90614 -9.55421 -8.67211 -7.83317 -5.36133 0.33706 0.82826 0.95223 1.40714 1.45827 1.51522 1.63932 2.05307 2.22062 2.49456 3.23576 3.28406 3.61802 3.67694 3.81568 3.99132 4.00272 4.15180 4.17123 4.31239 4.39218 4.46392 4.48084 4.52754 4.65277 4.75806 4.77049 4.79699 4.86113 4.90187 4.91548 5.05089 5.07738 5.14278 5.19888 5.33218 5.42532 5.55876 5.57903 5.63276 5.63958 5.77531 6.35637 6.37564 6.66786 7.11824 7.15300 7.87787 8.34198 9.18604 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.003375 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.151044 B = 8294.293589 C = 9639.922460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.614 5.614 3 C -0.265 4.265 4 H 0.060 0.940 5 C -0.048 4.048 6 N -0.933 5.933 7 Si 0.962 3.038 8 H -0.269 1.269 9 H -0.290 1.290 10 H -0.287 1.287 11 C 0.157 3.843 12 C -0.107 4.107 13 H 0.036 0.964 14 C -0.107 4.107 15 C -0.125 4.125 16 C 0.086 3.914 17 N -0.597 5.597 18 C 0.580 3.420 19 O -0.564 6.564 20 C -0.025 4.025 21 N -0.244 5.244 22 N -0.269 5.269 23 C 0.073 3.927 24 C 0.028 3.972 25 C -0.137 4.137 26 Cl -0.029 7.029 27 C 0.129 3.871 28 H 0.005 0.995 29 H 0.032 0.968 30 H 0.002 0.998 31 H 0.249 0.751 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.109 0.891 43 H 0.237 0.763 44 H 0.060 0.940 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.465 -23.342 23.170 33.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.337 5.337 3 C -0.395 4.395 4 H 0.078 0.922 5 C -0.244 4.244 6 N -0.579 5.579 7 Si 0.790 3.210 8 H -0.194 1.194 9 H -0.216 1.216 10 H -0.214 1.214 11 C 0.031 3.969 12 C -0.129 4.129 13 H 0.055 0.945 14 C -0.145 4.145 15 C -0.163 4.163 16 C -0.036 4.036 17 N -0.329 5.329 18 C 0.367 3.633 19 O -0.441 6.441 20 C -0.183 4.183 21 N -0.082 5.082 22 N -0.057 5.057 23 C -0.064 4.064 24 C -0.117 4.117 25 C -0.174 4.174 26 Cl -0.001 7.001 27 C 0.007 3.993 28 H 0.023 0.977 29 H 0.051 0.949 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.151 0.849 42 H 0.127 0.873 43 H 0.254 0.746 44 H 0.078 0.922 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.542 -23.591 22.570 33.116 hybrid contribution -0.560 2.511 0.105 2.575 sum 4.982 -21.080 22.675 31.359 Atomic orbital electron populations 1.20526 0.83494 0.95861 0.96971 1.44011 1.01638 1.01855 1.86171 1.19319 1.01788 0.88219 1.30177 0.92225 1.25830 0.99298 1.02076 0.97203 1.70189 1.26239 1.28668 1.32824 0.85429 0.78262 0.80030 0.77298 1.19412 1.21573 1.21395 1.20918 0.95817 0.86731 0.93427 1.21983 0.95277 0.97676 0.97944 0.94548 1.21522 0.99605 0.96057 0.97320 1.21887 0.96887 1.02251 0.95243 1.22646 0.89212 0.86446 1.05304 1.48119 1.46432 1.32647 1.05703 1.17471 0.79500 0.83286 0.83039 1.90840 1.43468 1.24240 1.85549 1.21619 1.07657 0.94934 0.94129 1.73384 1.19633 1.15211 0.99971 1.46184 1.39055 1.17368 1.03111 1.22836 1.02046 0.81193 1.00304 1.23209 1.00208 0.87515 1.00753 1.21128 1.09155 0.93571 0.93562 1.98364 1.77729 1.28342 1.95632 1.21598 0.97712 0.98558 0.81451 0.97684 0.94944 0.97934 0.94222 0.92829 0.93309 0.90166 0.91086 0.87471 0.93617 0.90106 0.85351 0.87375 0.84897 0.87284 0.74644 0.92193 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.58 8.10 127.77 1.03 10.61 16 2 N -0.61 -33.17 2.74 -726.95 -1.99 -35.16 16 3 C -0.26 -15.74 9.57 84.03 0.80 -14.94 16 4 H 0.06 3.50 7.87 -2.91 -0.02 3.47 16 5 C -0.05 -2.92 5.03 84.86 0.43 -2.49 16 6 N -0.93 -59.00 11.21 21.65 0.24 -58.76 16 7 Si 0.96 48.66 29.58 68.60 2.03 50.69 16 8 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 9 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 10 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 11 C 0.16 6.66 5.15 86.38 0.45 7.11 16 12 C -0.11 -3.92 2.54 -10.72 -0.03 -3.95 16 13 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 14 C -0.11 -2.75 5.17 30.62 0.16 -2.59 16 15 C -0.12 -2.71 6.08 30.67 0.19 -2.53 16 16 C 0.09 2.01 6.11 86.36 0.53 2.54 16 17 N -0.60 -19.93 2.97 -822.51 -2.44 -22.38 16 18 C 0.58 21.81 7.69 86.74 0.67 22.47 16 19 O -0.56 -26.33 15.32 -3.96 -0.06 -26.39 16 20 C -0.03 -0.73 6.83 42.45 0.29 -0.44 16 21 N -0.24 -5.07 8.43 -48.17 -0.41 -5.48 16 22 N -0.27 -3.32 3.72 -368.86 -1.37 -4.69 16 23 C 0.07 0.00 11.32 127.77 1.45 1.44 16 24 C 0.03 0.38 11.49 83.46 0.96 1.34 16 25 C -0.14 -3.45 6.80 22.44 0.15 -3.30 16 26 Cl -0.03 -0.84 28.20 -2.72 -0.08 -0.92 16 27 C 0.13 4.86 4.45 86.36 0.38 5.24 16 28 H 0.00 0.29 7.42 -2.39 -0.02 0.27 16 29 H 0.03 1.53 6.14 -2.39 -0.01 1.51 16 30 H 0.00 0.11 7.55 -2.39 -0.02 0.09 16 31 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.05 2.06 8.07 -2.39 -0.02 2.04 16 33 H 0.05 2.06 8.04 -2.39 -0.02 2.05 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.13 2.79 4.15 -30.11 -0.13 2.66 16 40 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.13 -0.83 8.13 -2.39 -0.02 -0.85 16 42 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.24 0.87 8.06 -2.91 -0.02 0.85 16 44 H 0.06 2.84 5.29 -2.39 -0.01 2.82 16 45 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 Total: -1.00 -85.85 372.11 4.26 -81.59 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: 0.88 Total: 0.97 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 7.46 Total: 20.53 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -5.97 Total: -126.46 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.06 Total: -26.39 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.03 Total: 50.69 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -85.85 4.26 -81.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566739506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.721 kcal (2) G-P(sol) polarization free energy of solvation -85.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds