Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00584 * 2 1 4 4 H 1.07996 * 120.00568 * 203.66680 * 3 2 1 5 5 C 1.38815 * 119.99905 * 23.66488 * 3 2 1 6 6 N 1.31625 * 119.99710 * 10.84981 * 5 3 2 7 7 Si 1.86800 * 120.00066 * 190.85464 * 5 3 2 8 8 H 1.48500 * 109.47263 * 89.99667 * 7 5 3 9 9 H 1.48502 * 109.46767 * 209.99657 * 7 5 3 10 10 H 1.48500 * 109.47277 * 329.99622 * 7 5 3 11 11 C 1.46504 * 119.99868 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47038 * 90.00038 * 11 2 1 13 13 H 1.08997 * 109.50172 * 304.94012 * 12 11 2 14 14 C 1.53040 * 109.49815 * 184.83786 * 12 11 2 15 15 C 1.53039 * 109.53884 * 178.68518 * 14 12 11 16 16 C 1.52767 * 109.38407 * 61.24215 * 15 14 12 17 17 N 1.46922 * 109.00409 * 305.58714 * 16 15 14 18 18 C 1.34776 * 120.62934 * 233.58155 * 17 16 15 19 19 O 1.21648 * 119.99892 * 184.26699 * 18 17 16 20 20 C 1.47029 * 120.00201 * 4.26317 * 18 17 16 21 21 C 1.38538 * 126.90519 * 96.65080 * 20 18 17 22 22 Cl 1.73596 * 127.33857 * 359.97438 * 21 20 18 23 23 C 1.39806 * 105.32633 * 180.14114 * 21 20 18 24 24 N 1.30836 * 107.87398 * 359.58735 * 23 21 20 25 25 N 1.28431 * 110.98297 * 0.26734 * 24 23 21 26 26 C 1.46504 * 125.18741 * 179.97438 * 25 24 23 27 27 C 1.46931 * 118.73786 * 53.31094 * 17 16 15 28 28 H 1.08997 * 109.47522 * 266.87570 * 1 2 3 29 29 H 1.09004 * 109.46508 * 26.87630 * 1 2 3 30 30 H 1.08996 * 109.47175 * 146.87164 * 1 2 3 31 31 H 0.97006 * 119.99627 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.47233 * 330.00337 * 11 2 1 33 33 H 1.08996 * 109.47158 * 210.00525 * 11 2 1 34 34 H 1.09005 * 109.46197 * 298.70882 * 14 12 11 35 35 H 1.09000 * 109.45922 * 58.67833 * 14 12 11 36 36 H 1.09000 * 109.49975 * 181.31966 * 15 14 12 37 37 H 1.08997 * 109.49911 * 301.38258 * 15 14 12 38 38 H 1.08996 * 109.50817 * 185.70431 * 16 15 14 39 39 H 1.09002 * 109.42972 * 65.42181 * 16 15 14 40 40 H 1.08001 * 126.06544 * 179.85582 * 23 21 20 41 41 H 1.08995 * 109.47304 * 85.26943 * 26 25 24 42 42 H 1.09000 * 109.46700 * 205.26780 * 26 25 24 43 43 H 1.09007 * 109.46850 * 325.26348 * 26 25 24 44 44 H 1.09001 * 109.58697 * 66.42905 * 27 17 16 45 45 H 1.09000 * 109.58262 * 186.70506 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1616 1.2251 -0.3754 5 6 1.5433 2.3375 0.4825 6 7 0.4016 2.2571 1.1325 7 14 2.3475 4.0012 0.2093 8 1 1.8640 4.5807 -1.0696 9 1 1.9958 4.9108 1.3293 10 1 3.8220 3.8347 0.1512 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4417 13 1 1.5063 -1.7570 -1.9809 14 6 3.1098 -3.0931 -1.4435 15 6 3.3354 -3.5507 -2.8864 16 6 4.2713 -2.5688 -3.5892 17 7 3.7219 -1.2119 -3.4650 18 6 3.5268 -0.4473 -4.5577 19 8 3.1448 0.7012 -4.4362 20 6 3.7758 -1.0014 -5.8967 21 6 2.8381 -1.5449 -6.7596 22 17 1.1318 -1.7145 -6.4891 23 6 3.5594 -1.9311 -7.8933 24 7 4.8151 -1.6218 -7.6950 25 7 4.9785 -1.0786 -6.5428 26 6 6.2584 -0.6130 -6.0028 27 6 3.3835 -0.7064 -2.1276 28 1 -0.3634 -0.0560 1.0261 29 1 -0.3632 0.9167 -0.4646 30 1 -0.3633 -0.8606 -0.5616 31 1 -0.0224 3.0620 1.4694 32 1 1.6083 -2.0282 0.5147 33 1 3.1498 -1.1383 0.5144 34 1 4.0674 -3.0405 -0.9253 35 1 2.4601 -3.8049 -0.9344 36 1 3.7821 -4.5449 -2.8872 37 1 2.3811 -3.5803 -3.4121 38 1 4.3532 -2.8349 -4.6430 39 1 5.2555 -2.6087 -3.1225 40 1 3.1516 -2.3977 -8.7779 41 1 6.4529 0.4009 -6.3522 42 1 6.2173 -0.6204 -4.9136 43 1 7.0571 -1.2734 -6.3407 44 1 4.2939 -0.5912 -1.5393 45 1 2.8822 0.2574 -2.2173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566740186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = 46.155632 kcal Electronic energy + Delta-G solvation = -28759.761098 eV Core-core repulsion = 24840.136025 eV Total energy + Delta-G solvation = -3919.625074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.78040 -41.14361 -38.96528 -37.69171 -37.25843 -34.69724 -34.34405 -33.17080 -32.25582 -31.51704 -28.23768 -27.97023 -27.55987 -26.67255 -24.17477 -23.74625 -22.87032 -22.26972 -21.08397 -20.26664 -19.08790 -18.56215 -17.91412 -17.06038 -16.98951 -16.83027 -16.49278 -15.96119 -15.51715 -15.40973 -15.32518 -15.00054 -14.82862 -14.71421 -14.19172 -14.10885 -13.98614 -13.81608 -13.65980 -13.37427 -12.96396 -12.87709 -12.82016 -12.81007 -12.56775 -12.34975 -12.09330 -12.02817 -11.86224 -11.79243 -11.65479 -11.59138 -11.33514 -11.24989 -10.57649 -10.38151 -9.89499 -9.78005 -8.71167 -7.82455 -5.27814 0.27633 0.66673 1.11826 1.35372 1.40827 1.46466 1.51024 1.56026 1.99543 2.50326 3.10778 3.33737 3.43762 3.66173 3.83153 3.88872 3.98391 4.07026 4.11352 4.17307 4.24868 4.32270 4.35522 4.46150 4.49578 4.58254 4.80866 4.83964 4.86678 4.86989 4.96306 5.03422 5.05200 5.14536 5.22381 5.36937 5.39133 5.44447 5.49900 5.59747 5.63825 5.71156 6.17368 6.36615 6.74386 6.83092 7.18033 7.90466 8.34653 9.22810 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.003868 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.999129 B = 7236.325519 C = 7718.980675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.618 5.618 3 C -0.242 4.242 4 H 0.074 0.926 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.953 3.047 8 H -0.299 1.299 9 H -0.292 1.292 10 H -0.265 1.265 11 C 0.156 3.844 12 C -0.107 4.107 13 H 0.043 0.957 14 C -0.106 4.106 15 C -0.126 4.126 16 C 0.103 3.897 17 N -0.587 5.587 18 C 0.583 3.417 19 O -0.563 6.563 20 C -0.015 4.015 21 C -0.130 4.130 22 Cl -0.026 7.026 23 C 0.030 3.970 24 N -0.273 5.273 25 N -0.262 5.262 26 C 0.076 3.924 27 C 0.129 3.871 28 H -0.002 1.002 29 H 0.022 0.978 30 H 0.018 0.982 31 H 0.245 0.755 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.226 0.774 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.134 0.866 44 H 0.075 0.925 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.719 -16.852 -15.469 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.341 5.341 3 C -0.373 4.373 4 H 0.091 0.909 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.783 3.217 8 H -0.227 1.227 9 H -0.218 1.218 10 H -0.190 1.190 11 C 0.029 3.971 12 C -0.129 4.129 13 H 0.061 0.939 14 C -0.144 4.144 15 C -0.164 4.164 16 C -0.018 4.018 17 N -0.319 5.319 18 C 0.368 3.632 19 O -0.441 6.441 20 C -0.146 4.146 21 C -0.168 4.168 22 Cl 0.002 6.998 23 C -0.147 4.147 24 N -0.104 5.104 25 N -0.050 5.050 26 C -0.063 4.063 27 C 0.008 3.992 28 H 0.016 0.984 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.242 0.758 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.152 0.848 44 H 0.093 0.907 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.532 -16.117 -15.697 26.253 hybrid contribution -1.378 1.640 0.470 2.193 sum 12.154 -14.477 -15.226 24.272 Atomic orbital electron populations 1.20457 0.83449 0.96315 0.96361 1.44121 1.01824 1.01970 1.86167 1.19473 0.98558 0.86745 1.32498 0.90871 1.25668 0.98641 1.01441 0.99108 1.70206 1.19954 1.27325 1.41350 0.85460 0.78861 0.81082 0.76309 1.22677 1.21823 1.18955 1.20931 0.95955 0.86684 0.93491 1.22002 0.97403 0.95481 0.97983 0.93888 1.21517 1.01603 0.94353 0.96911 1.21799 0.99632 0.99442 0.95526 1.21972 0.98314 0.79526 1.02000 1.48295 1.61253 1.16426 1.05891 1.17264 0.78011 0.84770 0.83153 1.90906 1.47603 1.19177 1.86377 1.21049 0.88465 1.08950 0.96170 1.21458 0.87094 1.10731 0.97547 1.98368 1.08508 1.96567 1.96362 1.23984 0.87518 1.03741 0.99449 1.73245 1.20884 1.14618 1.01651 1.45830 1.07235 1.41606 1.10378 1.22638 0.79999 1.03103 1.00540 1.21677 0.98853 0.98328 0.80391 0.98415 0.95953 0.96360 0.94524 0.92806 0.92827 0.90107 0.90489 0.87337 0.92879 0.90009 0.88261 0.75756 0.88550 0.88444 0.84759 0.90661 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.26 8.99 127.77 1.15 10.41 16 2 N -0.62 -30.95 2.81 -726.95 -2.04 -32.99 16 3 C -0.24 -13.34 8.28 84.04 0.70 -12.65 16 4 H 0.07 3.89 6.74 -2.91 -0.02 3.87 16 5 C -0.05 -3.13 5.09 84.86 0.43 -2.70 16 6 N -0.94 -57.51 10.68 21.65 0.23 -57.27 16 7 Si 0.95 47.53 29.57 68.60 2.03 49.56 16 8 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 9 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 C 0.16 5.89 5.19 86.38 0.45 6.34 16 12 C -0.11 -3.39 2.55 -10.72 -0.03 -3.42 16 13 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 14 C -0.11 -2.20 5.17 30.62 0.16 -2.04 16 15 C -0.13 -2.18 6.06 30.53 0.19 -1.99 16 16 C 0.10 1.90 6.32 86.22 0.54 2.44 16 17 N -0.59 -16.68 2.98 -824.05 -2.45 -19.14 16 18 C 0.58 19.45 6.80 86.55 0.59 20.04 16 19 O -0.56 -25.09 16.54 -4.18 -0.07 -25.16 16 20 C -0.02 -0.41 4.65 40.76 0.19 -0.23 16 21 C -0.13 -3.28 6.89 22.72 0.16 -3.13 16 22 Cl -0.03 -0.71 29.24 -2.72 -0.08 -0.79 16 23 C 0.03 0.59 12.04 85.22 1.03 1.62 16 24 N -0.27 -5.59 11.89 -57.07 -0.68 -6.27 16 25 N -0.26 -5.48 3.74 -355.92 -1.33 -6.82 16 26 C 0.08 0.99 11.22 127.77 1.43 2.42 16 27 C 0.13 4.43 4.64 86.36 0.40 4.83 16 28 H 0.00 -0.13 7.79 -2.39 -0.02 -0.15 16 29 H 0.02 1.27 6.76 -2.38 -0.02 1.25 16 30 H 0.02 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 32 H 0.05 1.89 8.07 -2.38 -0.02 1.87 16 33 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.43 6.32 -2.39 -0.02 1.41 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.23 2.69 8.06 -2.91 -0.02 2.67 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.24 7.66 -2.39 -0.02 1.23 16 43 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.06 2.96 5.42 -2.39 -0.01 2.95 16 Total: -1.00 -76.79 377.19 3.97 -72.81 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 0.99 Total: 4.12 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 7.38 Total: 21.95 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.28 Total: -122.49 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.07 Total: -25.16 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -76.79 3.97 -72.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566740186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.970 kcal (2) G-P(sol) polarization free energy of solvation -76.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds