Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 120.00164 * 2 1 4 4 H 1.48501 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47048 * 300.00141 * 3 2 1 6 6 H 1.48504 * 109.46594 * 60.00354 * 3 2 1 7 7 C 1.38806 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99929 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00090 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99701 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99956 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99966 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47337 * 179.97438 * 14 13 11 16 16 N 1.46494 * 109.47001 * 180.02562 * 15 14 13 17 17 C 1.34784 * 119.99635 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99925 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99961 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.46932 * 300.00223 * 19 17 16 21 21 C 1.53002 * 109.47318 * 59.99577 * 19 17 16 22 22 C 1.53001 * 109.46925 * 119.99883 * 21 19 17 23 23 C 1.52999 * 109.46894 * 60.00530 * 22 21 19 24 24 C 1.53005 * 109.47282 * 299.99860 * 23 22 21 25 25 C 1.52992 * 109.47257 * 180.02562 * 19 17 16 26 26 C 1.53003 * 109.47195 * 299.99960 * 25 19 17 27 27 C 1.52997 * 109.46951 * 300.00153 * 26 25 19 28 28 H 0.97005 * 120.00078 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47275 * 59.99813 * 10 9 7 30 30 H 1.09002 * 109.46848 * 300.00382 * 10 9 7 31 31 H 0.96999 * 120.00050 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47136 * 59.99929 * 14 13 11 33 33 H 1.08996 * 109.47174 * 300.00587 * 14 13 11 34 34 H 1.09005 * 109.46767 * 60.00068 * 15 14 13 35 35 H 1.09002 * 109.47113 * 300.00408 * 15 14 13 36 36 H 0.96995 * 120.00292 * 0.27801 * 16 15 14 37 37 H 1.09001 * 109.47350 * 240.00378 * 21 19 17 38 38 H 1.09000 * 109.46403 * 0.02562 * 21 19 17 39 39 H 1.08997 * 109.46949 * 179.97438 * 22 21 19 40 40 H 1.09001 * 109.47151 * 59.99646 * 23 22 21 41 41 H 1.09000 * 109.46869 * 180.02562 * 23 22 21 42 42 H 1.08998 * 109.47134 * 240.00360 * 24 23 22 43 43 H 1.08999 * 109.47484 * 119.99576 * 24 23 22 44 44 H 1.09005 * 109.47124 * 59.99773 * 25 19 17 45 45 H 1.08998 * 109.47453 * 179.97438 * 26 25 19 46 46 H 1.08996 * 109.46790 * 59.99855 * 26 25 19 47 47 H 1.09002 * 109.47092 * 239.99993 * 27 26 25 48 48 H 1.09001 * 109.47416 * 120.00045 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5023 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3303 -7.7151 -0.0008 15 6 3.5023 -8.6986 -0.0009 16 7 2.9885 -10.0705 -0.0016 17 6 3.8453 -11.1110 -0.0013 18 8 5.0416 -10.9114 -0.0009 19 6 3.3168 -12.5223 -0.0026 20 1 2.7073 -12.6828 0.8867 21 6 2.4637 -12.7463 -1.2527 22 6 3.0670 -13.8791 -2.0856 23 6 3.0992 -15.1626 -1.2534 24 6 3.9522 -14.9386 -0.0031 25 6 4.4888 -13.5057 -0.0013 26 6 5.3449 -13.2806 -1.2493 27 6 4.4923 -13.5048 -2.4997 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1244 -3.7313 -0.8905 31 1 3.8008 -6.1836 -0.0004 32 1 1.7219 -7.8753 -0.8910 33 1 1.7213 -7.8751 0.8889 34 1 4.1110 -8.5386 0.8891 35 1 4.1109 -8.5385 -0.8909 36 1 2.0318 -10.2301 -0.0060 37 1 1.4490 -13.0132 -0.9572 38 1 2.4412 -11.8320 -1.8457 39 1 2.4590 -14.0390 -2.9760 40 1 2.0845 -15.4295 -0.9578 41 1 3.5294 -15.9695 -1.8466 42 1 4.7872 -15.6392 -0.0027 43 1 3.3428 -15.0991 0.8862 44 1 5.0962 -13.3460 0.8896 45 1 6.1801 -13.9810 -1.2481 46 1 5.7271 -12.2599 -1.2483 47 1 4.9223 -14.3120 -3.0928 48 1 4.4697 -12.5905 -3.0928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445814.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -100.707596 kcal Electronic energy + Delta-G solvation = -26490.273696 eV Core-core repulsion = 22669.864204 eV Total energy + Delta-G solvation = -3820.409491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50538 -39.40687 -38.86883 -35.98957 -34.07096 -32.44735 -32.03234 -31.71754 -31.14016 -30.10707 -27.93932 -25.50876 -24.27652 -22.90270 -22.89096 -22.24922 -20.94482 -20.27977 -18.10947 -17.69198 -17.08604 -16.92467 -16.60085 -16.16117 -16.08797 -15.90337 -15.44051 -15.08255 -14.84531 -14.81902 -14.07743 -13.91356 -13.47555 -13.20667 -13.14153 -12.64234 -12.59530 -12.53607 -12.44927 -12.41893 -12.39599 -12.36198 -12.03560 -12.02221 -11.65439 -11.15344 -11.08208 -11.03959 -10.77729 -10.64981 -10.27909 -10.24470 -9.83592 -9.78195 -9.50242 -9.37574 -9.10309 -9.01491 -8.26381 -6.52631 -6.23769 -3.94519 2.31536 2.55693 3.01529 3.11817 3.20651 3.28335 3.34690 3.73758 4.01123 4.14579 4.18472 4.20143 4.39319 4.61717 4.75087 4.78818 4.80563 4.84975 4.86977 4.91428 4.99967 5.07711 5.10087 5.11740 5.12271 5.18100 5.25245 5.34670 5.53770 5.57222 5.61098 5.63081 5.66597 5.73265 5.79926 5.85796 5.86393 5.91802 5.96807 6.00671 6.07505 6.10978 6.25308 6.47318 7.10911 7.57673 7.59494 7.89155 8.33682 8.51499 9.21904 10.83725 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037250 B = 0.001531 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.492679 B =18283.037219 C =18555.048212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.111 3.889 15 C 0.109 3.891 16 N -0.728 5.728 17 C 0.520 3.480 18 O -0.532 6.532 19 C -0.101 4.101 20 H 0.097 0.903 21 C -0.108 4.108 22 C -0.086 4.086 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.064 4.064 26 C -0.126 4.126 27 C -0.115 4.115 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.401 0.599 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.401 -31.749 -1.734 32.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.390 6.390 13 N -0.393 5.393 14 C -0.014 4.014 15 C -0.015 4.015 16 N -0.381 5.381 17 C 0.307 3.693 18 O -0.409 6.409 19 C -0.123 4.123 20 H 0.115 0.885 21 C -0.146 4.146 22 C -0.104 4.104 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.083 4.083 26 C -0.164 4.164 27 C -0.153 4.153 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.235 0.765 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.097 -31.820 -1.730 32.647 hybrid contribution 1.894 1.318 0.027 2.308 sum 8.992 -30.502 -1.703 31.845 Atomic orbital electron populations 1.70025 1.05961 1.27378 1.46917 1.24997 0.95031 0.99058 0.94496 0.86108 0.79596 0.81832 0.77911 1.19601 1.20555 1.20550 1.22913 0.94972 0.91588 1.58905 0.90815 1.85391 1.04869 0.96395 1.96733 1.23531 1.06671 0.95101 1.05112 1.20327 0.86432 0.86229 0.74969 1.90708 1.15341 1.85561 1.47382 1.45811 1.10247 1.04893 1.78300 1.21319 0.95582 0.81390 1.03092 1.21445 0.96276 0.80602 1.03222 1.45851 1.10414 1.05623 1.76184 1.20689 0.86520 0.86797 0.75287 1.90645 1.15491 1.85906 1.48846 1.21350 0.98786 0.91540 1.00601 0.88461 1.21601 0.98482 0.99423 0.95094 1.21039 0.96735 0.94712 0.97957 1.21559 0.99998 0.97059 0.96552 1.21570 0.99585 0.96090 0.97959 1.20780 0.94821 0.93141 0.99524 1.21781 0.97425 1.04010 0.93152 1.21580 0.94811 1.01101 0.97780 0.92217 0.89056 0.89065 0.76488 0.90993 0.90967 0.90694 0.90747 0.76207 0.90823 0.91272 0.90904 0.91937 0.91951 0.91662 0.91970 0.90603 0.92408 0.89147 0.92155 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 11 C 0.53 9.60 7.85 -10.99 -0.09 9.51 16 12 O -0.52 -11.33 15.86 5.55 0.09 -11.24 16 13 N -0.74 -9.17 5.56 -60.29 -0.33 -9.51 16 14 C 0.11 1.13 5.79 -4.04 -0.02 1.11 16 15 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16 16 N -0.73 -5.38 5.30 -60.29 -0.32 -5.70 16 17 C 0.52 4.61 6.61 -10.98 -0.07 4.54 16 18 O -0.53 -6.56 13.65 5.56 0.08 -6.48 16 19 C -0.10 -0.65 2.56 -91.77 -0.24 -0.89 16 20 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 21 C -0.11 -0.58 5.21 -26.73 -0.14 -0.72 16 22 C -0.09 -0.49 3.20 -90.58 -0.29 -0.78 16 23 C -0.11 -0.57 5.71 -26.73 -0.15 -0.73 16 24 C -0.11 -0.62 5.71 -26.73 -0.15 -0.77 16 25 C -0.06 -0.45 2.36 -90.62 -0.21 -0.67 16 26 C -0.13 -1.01 5.39 -26.73 -0.14 -1.16 16 27 C -0.12 -0.79 5.71 -26.70 -0.15 -0.94 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 31 H 0.40 3.88 8.47 -40.82 -0.35 3.54 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.40 2.12 8.37 -40.82 -0.34 1.78 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.41 7.44 -51.93 -0.39 0.03 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.95 5.51 -51.93 -0.29 0.66 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -35.41 392.35 -10.43 -45.85 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -8.09 Total: 0.27 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.27 Total: -6.27 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.08 Total: -40.48 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.41 -10.43 -45.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445814.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.862 kcal (2) G-P(sol) polarization free energy of solvation -35.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds