Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00221 * 2 1 4 4 H 1.48499 * 109.47394 * 270.00032 * 3 2 1 5 5 H 1.48506 * 109.47313 * 29.99753 * 3 2 1 6 6 H 1.48506 * 109.47454 * 149.99881 * 3 2 1 7 7 C 1.38795 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99962 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99904 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47228 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99873 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 N 1.46496 * 109.47030 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99867 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00137 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.47476 * 59.99658 * 19 17 16 21 21 C 1.53000 * 109.47264 * 299.99843 * 19 17 16 22 22 C 1.52992 * 109.47264 * 240.00109 * 21 19 17 23 23 C 1.53001 * 109.47263 * 299.99544 * 22 21 19 24 24 C 1.53005 * 109.47071 * 59.99858 * 23 22 21 25 25 C 1.53002 * 109.47300 * 179.97438 * 19 17 16 26 26 C 1.52997 * 109.47143 * 59.99960 * 25 19 17 27 27 C 1.52997 * 109.47232 * 59.99957 * 26 25 19 28 28 H 0.97010 * 119.99786 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47087 * 60.00174 * 10 9 7 30 30 H 1.08996 * 109.47381 * 300.00357 * 10 9 7 31 31 H 0.96999 * 120.00047 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 33 33 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 34 34 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 35 35 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 36 36 H 0.96999 * 120.00085 * 359.97438 * 16 15 14 37 37 H 1.09004 * 109.46796 * 359.97438 * 21 19 17 38 38 H 1.09002 * 109.47271 * 119.99460 * 21 19 17 39 39 H 1.09000 * 109.47678 * 179.97438 * 22 21 19 40 40 H 1.08994 * 109.47139 * 300.00327 * 23 22 21 41 41 H 1.09001 * 109.47629 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47360 * 240.00412 * 24 23 22 43 43 H 1.08998 * 109.47061 * 119.99593 * 24 23 22 44 44 H 1.09004 * 109.46930 * 299.99895 * 25 19 17 45 45 H 1.09001 * 109.46832 * 180.02562 * 26 25 19 46 46 H 1.09002 * 109.47153 * 299.99965 * 26 25 19 47 47 H 1.08996 * 109.47479 * 240.00113 * 27 26 25 48 48 H 1.09001 * 109.46601 * 119.99990 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0014 9 16 3.7722 -1.2020 -0.0001 10 6 4.0865 -2.9846 0.0017 11 6 5.5729 -3.2326 0.0021 12 8 6.3440 -2.2964 0.0016 13 7 6.0455 -4.4948 0.0029 14 6 7.4906 -4.7359 0.0038 15 6 7.7562 -6.2427 0.0052 16 7 9.2012 -6.4837 0.0067 17 6 9.6738 -7.7459 0.0077 18 8 8.9029 -8.6821 0.0077 19 6 11.1602 -7.9940 0.0086 20 1 11.6028 -7.5465 0.8986 21 6 11.7827 -7.3672 -1.2406 22 6 12.4633 -8.4561 -2.0724 23 6 13.5575 -9.1257 -1.2387 24 6 12.9351 -9.7525 0.0107 25 6 11.4259 -9.5008 0.0102 26 6 10.8048 -10.1294 -1.2387 27 6 11.4271 -9.5032 -2.4882 28 1 -0.4850 0.8401 -0.0004 29 1 3.6432 -3.4326 -0.8876 30 1 3.6439 -3.4306 0.8923 31 1 5.4289 -5.2436 0.0036 32 1 7.9340 -4.2893 -0.8862 33 1 7.9331 -4.2884 0.8938 34 1 7.3129 -6.6889 0.8955 35 1 7.3136 -6.6905 -0.8845 36 1 9.8179 -5.7350 0.0063 37 1 11.0031 -6.8905 -1.8348 38 1 12.5208 -6.6219 -0.9439 39 1 12.9064 -8.0097 -2.9626 40 1 14.2955 -8.3806 -0.9420 41 1 14.0421 -9.9018 -1.8311 42 1 13.3775 -9.3050 0.9006 43 1 13.1243 -10.8260 0.0113 44 1 10.9825 -9.9469 0.9005 45 1 10.9937 -11.2030 -1.2373 46 1 9.7296 -9.9501 -1.2394 47 1 10.6476 -9.0264 -3.0824 48 1 11.9119 -10.2793 -3.0805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -100.308639 kcal Electronic energy + Delta-G solvation = -26539.905493 eV Core-core repulsion = 22719.513302 eV Total energy + Delta-G solvation = -3820.392191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53039 -39.50470 -38.92641 -36.05357 -34.14837 -32.45906 -32.06611 -31.74383 -31.15937 -30.22473 -28.03481 -25.63642 -24.32299 -22.94772 -22.91595 -22.28004 -21.01048 -20.36822 -18.15761 -17.70710 -17.11532 -16.94590 -16.68159 -16.22943 -16.13213 -15.96485 -15.50572 -15.14647 -14.96535 -14.90907 -14.14742 -13.81974 -13.49018 -13.35434 -13.16662 -12.81777 -12.69364 -12.58362 -12.47284 -12.44614 -12.41948 -12.38255 -12.10436 -12.08299 -11.74674 -11.29029 -11.17488 -11.02705 -10.68323 -10.63488 -10.29937 -10.26561 -9.89975 -9.80947 -9.61924 -9.41363 -9.13335 -9.01540 -8.53521 -6.94739 -6.30645 -4.02949 2.28637 2.46349 2.86709 2.88260 3.30938 3.37702 3.48509 3.66231 3.98747 4.11849 4.17756 4.31093 4.33957 4.58722 4.70994 4.72620 4.74003 4.78251 4.82778 4.84405 4.89247 4.98049 5.05811 5.08393 5.09028 5.11470 5.23208 5.24875 5.32594 5.53257 5.54978 5.60404 5.62785 5.66182 5.73100 5.77669 5.84415 5.89345 5.94195 5.97311 5.98536 6.05443 6.23024 6.37460 7.07244 7.47878 7.86064 7.92308 8.38074 8.40143 9.15337 10.78534 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.036446 B = 0.001585 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.070426 B =17665.566929 C =17970.129876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.111 3.889 15 C 0.109 3.891 16 N -0.728 5.728 17 C 0.520 3.480 18 O -0.532 6.532 19 C -0.101 4.101 20 H 0.097 0.903 21 C -0.108 4.108 22 C -0.086 4.086 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.064 4.064 26 C -0.126 4.126 27 C -0.115 4.115 28 H 0.271 0.729 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.403 0.597 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.070 -20.971 -1.616 35.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.390 5.390 14 C -0.014 4.014 15 C -0.016 4.016 16 N -0.381 5.381 17 C 0.307 3.693 18 O -0.408 6.408 19 C -0.123 4.123 20 H 0.115 0.885 21 C -0.146 4.146 22 C -0.104 4.104 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.083 4.083 26 C -0.164 4.164 27 C -0.153 4.153 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.237 0.763 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.238 0.762 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 28.614 -19.974 -1.614 34.934 hybrid contribution -0.846 -0.260 -0.002 0.885 sum 27.768 -20.234 -1.616 34.396 Atomic orbital electron populations 1.69940 1.05911 1.27776 1.47965 1.24712 0.94456 0.98965 0.93163 0.86734 0.81876 0.83287 0.79927 1.19208 1.19916 1.15946 1.22314 0.88201 0.97581 1.58894 0.89334 1.84783 1.09394 0.99907 1.97446 1.23277 0.93688 1.04522 1.06005 1.20297 0.90720 0.81998 0.75062 1.90706 1.58775 1.42145 1.47606 1.45767 1.06779 1.08444 1.78030 1.21331 0.82774 0.94133 1.03118 1.21444 0.81560 0.95269 1.03308 1.45846 1.07658 1.08352 1.76259 1.20689 0.91070 0.82244 0.75284 1.90649 1.59250 1.42122 1.48777 1.21352 0.91619 0.98710 1.00597 0.88464 1.21598 1.00120 0.97763 0.95109 1.21038 0.95857 0.95602 0.97944 1.21558 0.97224 0.99830 0.96556 1.21571 0.94741 1.00942 0.97956 1.20781 0.95374 0.92573 0.99534 1.21782 1.02384 0.99069 0.93141 1.21581 0.97910 0.98005 0.97787 0.91922 0.88326 0.88290 0.76307 0.90932 0.90931 0.90651 0.90674 0.76227 0.91285 0.90841 0.90909 0.91947 0.91937 0.91970 0.91644 0.90589 0.92384 0.89148 0.92279 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.61 27.74 -169.99 -4.71 16.89 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 7 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 11 C 0.53 9.01 7.85 -10.99 -0.09 8.93 16 12 O -0.52 -10.71 15.86 5.55 0.09 -10.62 16 13 N -0.73 -8.57 5.56 -60.29 -0.33 -8.90 16 14 C 0.11 1.06 5.79 -4.04 -0.02 1.03 16 15 C 0.11 0.87 5.79 -4.04 -0.02 0.84 16 16 N -0.73 -5.09 5.30 -60.29 -0.32 -5.41 16 17 C 0.52 4.46 6.61 -10.99 -0.07 4.39 16 18 O -0.53 -6.42 13.66 5.56 0.08 -6.34 16 19 C -0.10 -0.62 2.56 -91.77 -0.24 -0.86 16 20 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 21 C -0.11 -0.56 5.21 -26.74 -0.14 -0.69 16 22 C -0.09 -0.47 3.20 -90.59 -0.29 -0.76 16 23 C -0.11 -0.55 5.71 -26.73 -0.15 -0.70 16 24 C -0.11 -0.60 5.71 -26.73 -0.15 -0.75 16 25 C -0.06 -0.44 2.36 -90.62 -0.21 -0.65 16 26 C -0.13 -0.99 5.39 -26.73 -0.14 -1.13 16 27 C -0.12 -0.77 5.71 -26.70 -0.15 -0.92 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.40 3.63 8.47 -40.82 -0.35 3.28 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.40 1.94 8.37 -40.82 -0.34 1.60 16 37 H 0.07 0.39 7.44 -51.93 -0.39 0.00 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.93 5.51 -51.93 -0.29 0.65 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -35.06 389.66 -9.92 -44.99 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.12 Total: 0.00 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.25 Total: -5.32 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.12 Total: -39.94 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.16 Total: -16.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.06 -9.92 -44.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.322 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds