Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28779 * 125.44961 * 2 1 4 4 N 1.28992 * 108.72923 * 180.02562 * 3 2 1 5 5 C 1.33320 * 107.35600 * 359.97438 * 4 3 2 6 6 C 1.50695 * 126.55523 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47160 * 90.02073 * 6 5 4 8 8 C 1.46904 * 110.99704 * 180.02562 * 7 6 5 9 9 H 1.08997 * 112.91255 * 23.75022 * 8 7 6 10 10 C 1.53781 * 113.61321 * 155.00207 * 8 7 6 11 11 C 1.53786 * 87.17350 * 139.93872 * 10 8 7 12 12 H 1.09000 * 113.61138 * 220.06261 * 11 10 8 13 13 C 1.52993 * 113.61559 * 89.15694 * 11 10 8 14 14 N 1.46505 * 109.47049 * 174.99997 * 13 11 10 15 15 C 1.34774 * 119.99852 * 179.97438 * 14 13 11 16 16 O 1.21280 * 120.00333 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00015 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.47099 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99681 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00254 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99633 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00419 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99725 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47286 * 60.00192 * 23 21 19 25 25 H 1.48504 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47123 * 299.99976 * 23 21 19 27 27 C 1.53782 * 113.61210 * 252.49938 * 8 7 6 28 28 N 1.28887 * 125.44733 * 180.33099 * 2 1 3 29 29 H 1.09007 * 109.47114 * 89.98005 * 1 2 3 30 30 H 1.08999 * 109.47286 * 209.97691 * 1 2 3 31 31 H 1.08999 * 109.47298 * 329.98076 * 1 2 3 32 32 H 1.09009 * 109.47134 * 330.02216 * 6 5 4 33 33 H 1.08999 * 109.47622 * 210.02688 * 6 5 4 34 34 H 1.00895 * 110.99766 * 56.05263 * 7 6 5 35 35 H 1.09002 * 113.61445 * 254.52871 * 10 8 7 36 36 H 1.09002 * 113.61408 * 25.34602 * 10 8 7 37 37 H 1.08998 * 109.47144 * 294.99941 * 13 11 10 38 38 H 1.08996 * 109.47235 * 55.00309 * 13 11 10 39 39 H 0.96992 * 119.99762 * 0.02562 * 14 13 11 40 40 H 1.08998 * 109.47101 * 300.00278 * 17 15 14 41 41 H 1.09005 * 109.46752 * 60.00025 * 17 15 14 42 42 H 0.96999 * 119.99989 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.61668 * 334.56534 * 27 8 7 44 44 H 1.08998 * 113.61674 * 105.39043 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4472 0.6780 -0.0005 5 6 3.4620 -0.6552 -0.0003 6 6 4.6824 -1.5392 -0.0002 7 7 5.0787 -1.8267 1.3848 8 6 6.2684 -2.6877 1.4240 9 1 6.8691 -2.6229 0.5168 10 6 7.0884 -2.5467 2.7172 11 6 7.2785 -4.0722 2.6728 12 1 7.2101 -4.5493 3.6504 13 6 8.5100 -4.5135 1.8795 14 7 8.6709 -5.9651 1.9951 15 6 9.6958 -6.5811 1.3734 16 8 10.4852 -5.9337 0.7186 17 6 9.8616 -8.0742 1.4927 18 16 11.3185 -8.5963 0.5541 19 6 11.2730 -10.3312 0.8587 20 1 10.4906 -10.7512 1.4734 21 6 12.2433 -11.1579 0.3095 22 7 13.1978 -10.6458 -0.4384 23 14 12.1956 -12.9970 0.6330 24 1 10.9177 -13.5563 0.1236 25 1 13.3341 -13.6514 -0.0604 26 1 12.2973 -13.2455 2.0935 27 6 5.9700 -4.1308 1.8635 28 7 2.2124 -1.0500 -0.0061 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.4989 -1.0315 -0.5139 33 1 4.4548 -2.4730 -0.5143 34 1 4.3162 -2.2393 1.9008 35 1 8.0150 -1.9873 2.5879 36 1 6.5029 -2.2043 3.5704 37 1 8.3824 -4.2444 0.8310 38 1 9.3953 -4.0171 2.2769 39 1 8.0394 -6.4828 2.5184 40 1 9.9899 -8.3428 2.5412 41 1 8.9761 -8.5709 1.0960 42 1 13.8757 -11.2236 -0.8225 43 1 5.0784 -4.2229 2.4837 44 1 5.9923 -4.8501 1.0448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707077460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = 114.790863 kcal Electronic energy + Delta-G solvation = -25193.254638 eV Core-core repulsion = 21310.942269 eV Total energy + Delta-G solvation = -3882.312369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.74959 -40.14303 -38.77884 -36.23168 -35.10369 -34.00447 -32.96915 -32.42195 -29.93891 -29.28758 -27.37430 -26.00761 -25.82084 -25.35904 -23.54649 -22.91785 -22.44779 -20.36898 -19.33476 -18.02081 -17.93510 -17.74209 -16.67630 -16.28905 -16.15616 -15.61533 -15.22888 -15.12202 -14.79818 -14.45297 -14.34384 -14.14519 -13.91913 -13.75864 -13.62032 -13.23423 -12.99706 -12.72302 -12.61489 -12.55405 -12.36661 -12.11908 -11.67880 -11.44134 -11.40277 -11.30387 -11.04001 -11.03531 -10.76789 -10.74652 -10.70021 -10.45484 -9.81733 -9.37935 -9.05757 -8.86417 -8.84847 -8.23092 -6.49217 -6.20857 -3.91510 0.77065 1.47047 1.70670 3.04480 3.11993 3.23766 3.27941 3.31626 3.32126 3.71065 3.74981 3.86833 4.19845 4.21217 4.24910 4.26257 4.38903 4.46436 4.55628 4.60741 4.87233 4.96202 5.09648 5.14139 5.18980 5.23091 5.29770 5.33538 5.38488 5.45513 5.59834 5.66365 5.67799 5.73681 5.80082 5.85608 5.91515 6.04002 6.14872 6.52653 6.64659 6.83985 7.59750 7.73371 7.93933 8.35569 8.63542 9.24243 10.86504 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025658 B = 0.001449 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.029934 B =19316.151372 C =19711.560192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.143 5.143 3 N -0.064 5.064 4 N -0.266 5.266 5 C 0.173 3.827 6 C 0.156 3.844 7 N -0.672 5.672 8 C 0.067 3.933 9 H 0.105 0.895 10 C -0.115 4.115 11 C -0.123 4.123 12 H 0.086 0.914 13 C 0.139 3.861 14 N -0.738 5.738 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.164 4.164 28 N -0.307 5.307 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.345 0.655 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.084 0.916 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.556 19.921 5.076 34.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.055 5.055 3 N -0.058 5.058 4 N -0.138 5.138 5 C -0.110 4.110 6 C 0.024 3.976 7 N -0.303 5.303 8 C -0.043 4.043 9 H 0.123 0.877 10 C -0.154 4.154 11 C -0.142 4.142 12 H 0.105 0.895 13 C 0.015 3.985 14 N -0.392 5.392 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.203 4.203 28 N -0.159 5.159 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.164 0.836 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.126 22.147 3.906 34.471 hybrid contribution -1.635 -3.468 0.987 3.960 sum -27.761 18.678 4.893 33.816 Atomic orbital electron populations 1.22444 0.69117 1.06907 1.06081 1.50042 1.10738 1.00944 1.43736 1.79019 0.96639 1.14305 1.15853 1.75881 1.09542 1.11210 1.17153 1.25496 0.92777 0.90808 1.01901 1.20173 0.90160 0.95496 0.91788 1.60401 1.08441 1.49886 1.11564 1.23166 0.91853 0.89876 0.99424 0.87717 1.23036 1.00236 0.94291 0.97827 1.22465 0.94318 0.97779 0.99637 0.89541 1.21078 0.96493 0.81098 0.99879 1.45987 1.30759 1.07910 1.54586 1.20302 0.80020 0.89682 0.78325 1.90704 1.42401 1.66794 1.39347 1.23531 1.07100 0.93778 1.06007 1.85398 1.27730 1.06341 1.63884 1.22833 1.16028 0.92235 1.37405 0.90995 1.24984 0.94517 0.99490 0.94524 1.70007 1.13355 1.35995 1.30922 0.86231 0.77832 0.82890 0.78580 1.19963 1.20799 1.19946 1.23779 0.97852 0.98205 1.00491 1.74690 1.03417 1.15544 1.22221 0.88009 0.87107 0.86885 0.87435 0.91746 0.83553 0.90583 0.89288 0.91529 0.91215 0.76861 0.89252 0.89295 0.92127 0.89766 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.13 11.63 59.84 0.70 0.82 16 2 N -0.14 -1.03 4.40 -16.69 -0.07 -1.11 16 3 N -0.06 -0.63 13.25 60.35 0.80 0.17 16 4 N -0.27 -2.99 12.50 32.45 0.41 -2.58 16 5 C 0.17 1.63 7.88 -156.62 -1.23 0.40 16 6 C 0.16 1.15 6.15 -4.98 -0.03 1.12 16 7 N -0.67 -4.88 6.61 -107.13 -0.71 -5.59 16 8 C 0.07 0.46 3.84 -66.90 -0.26 0.21 16 9 H 0.10 0.76 7.45 -51.93 -0.39 0.37 16 10 C -0.12 -0.82 7.46 -25.92 -0.19 -1.01 16 11 C -0.12 -0.92 3.95 -89.71 -0.35 -1.28 16 12 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 13 C 0.14 1.52 5.36 -4.04 -0.02 1.50 16 14 N -0.74 -9.50 5.56 -60.30 -0.33 -9.84 16 15 C 0.53 9.81 7.85 -10.99 -0.09 9.72 16 16 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.16 -1.10 7.23 -25.82 -0.19 -1.28 16 28 N -0.31 -2.67 12.13 32.47 0.39 -2.27 16 29 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 30 H 0.11 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.11 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.11 0.76 8.13 -51.92 -0.42 0.34 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.35 2.35 8.19 -39.29 -0.32 2.02 16 35 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.78 7.40 -51.93 -0.38 0.40 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 0.49 7.82 -51.93 -0.41 0.08 16 44 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -37.81 390.54 -7.75 -45.56 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.46 Total: 0.04 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.25 Total: -5.65 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 1.22 Total: -46.67 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.81 -7.75 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707077460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.355 kcal (2) G-P(sol) polarization free energy of solvation -37.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds