Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 N 1.46898 * 109.46947 * 180.02562 * 13 12 11 15 15 C 1.46894 * 111.00387 * 66.04765 * 14 13 12 16 16 C 1.46906 * 110.99589 * 190.00154 * 14 13 12 17 17 C 1.50704 * 109.46950 * 170.00089 * 16 14 13 18 18 O 1.21292 * 120.00070 * 359.97438 * 17 16 14 19 19 N 1.34774 * 119.99609 * 179.97438 * 17 16 14 20 20 C 1.37101 * 119.99744 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00215 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99832 * 179.97438 * 20 19 17 23 23 N 1.31409 * 120.00005 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47572 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46704 * 120.00418 * 24 22 20 27 27 H 1.48498 * 109.47199 * 240.00381 * 24 22 20 28 28 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 29 29 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 31 31 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 32 32 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 33 33 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 36 36 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 37 37 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 38 38 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 39 39 H 1.09006 * 109.47151 * 59.99589 * 15 14 13 40 40 H 1.09000 * 109.47496 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47031 * 299.99782 * 15 14 13 42 42 H 1.09007 * 109.46952 * 289.99615 * 16 14 13 43 43 H 1.08995 * 109.47632 * 49.99732 * 16 14 13 44 44 H 0.97000 * 120.00714 * 0.02562 * 19 17 16 45 45 H 0.97003 * 119.99431 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 7 5.5625 1.0043 -7.2302 15 6 4.9967 2.3054 -7.6108 16 6 6.7206 0.6682 -8.0691 17 6 6.2672 0.4599 -9.4912 18 8 5.0946 0.5792 -9.7775 19 7 7.1646 0.1410 -10.4447 20 6 6.7521 -0.0490 -11.7383 21 1 5.7080 0.0572 -11.9933 22 6 7.6775 -0.3773 -12.7215 23 7 8.9479 -0.5061 -12.4114 24 14 7.1154 -0.6355 -14.4841 25 1 5.6468 -0.4331 -14.5702 26 1 7.8017 0.3388 -15.3702 27 1 7.4511 -2.0169 -14.9134 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 6.5911 0.9310 -1.1214 34 1 5.9373 0.9934 -3.2730 35 1 3.9939 0.2471 -5.1816 36 1 4.1364 2.0214 -5.1906 37 1 6.5767 1.8235 -5.5831 38 1 6.4343 0.0492 -5.5742 39 1 5.7300 3.0897 -7.4224 40 1 4.7409 2.2945 -8.6703 41 1 4.0997 2.4978 -7.0221 42 1 7.4435 1.4833 -8.0340 43 1 7.1850 -0.2455 -7.6983 44 1 8.1023 0.0451 -10.2157 45 1 9.5938 -0.7356 -13.0978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713472827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -36.748031 kcal Electronic energy + Delta-G solvation = -28355.425318 eV Core-core repulsion = 23991.496107 eV Total energy + Delta-G solvation = -4363.929211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.43410 -39.91496 -38.68990 -38.24208 -36.85576 -34.84651 -34.43975 -33.85126 -32.61142 -31.27730 -29.68388 -28.66980 -27.75165 -26.21187 -25.70288 -24.81929 -23.58137 -21.85078 -21.29123 -20.90230 -19.20401 -18.73854 -18.26499 -17.87794 -17.23804 -16.65443 -16.51027 -16.11945 -16.04423 -15.86971 -15.59262 -15.09836 -14.90657 -14.64259 -14.31623 -14.05873 -13.85926 -13.55460 -13.36712 -13.07004 -12.92068 -12.78457 -12.17622 -11.97589 -11.93640 -11.85830 -11.55844 -11.46472 -11.32357 -11.12808 -10.98313 -10.64446 -10.50431 -10.35554 -10.25162 -10.24505 -10.04959 -9.51212 -9.36596 -8.52156 -8.02238 -7.92993 -6.44178 -3.84822 0.58432 1.18141 2.37376 2.73773 2.83478 3.14893 3.25829 3.27388 3.33146 3.65574 3.87046 3.94812 4.01811 4.23716 4.33736 4.47024 4.73521 4.76060 4.83868 4.92346 5.00656 5.05580 5.07195 5.14676 5.21816 5.31114 5.34508 5.36755 5.57956 5.63454 5.75510 5.81184 5.87694 5.94714 6.06233 6.24023 6.51335 6.67464 7.04859 7.16073 7.26789 7.53557 7.67041 7.81602 8.04236 8.59171 9.16096 9.51760 10.03410 10.73594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024162 B = 0.001636 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.565921 B =17113.559797 C =17843.684910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.066 3.934 5 N -0.338 5.338 6 O 0.108 5.892 7 C -0.007 4.007 8 C -0.236 4.236 9 C 0.594 3.406 10 O -0.520 6.520 11 N -0.721 5.721 12 C 0.123 3.877 13 C 0.044 3.956 14 N -0.515 5.515 15 C 0.018 3.982 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.016 0.984 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 4.833 26.104 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.064 3.936 4 C -0.097 4.097 5 N -0.043 5.043 6 O 0.044 5.956 7 C -0.089 4.089 8 C -0.244 4.244 9 C 0.380 3.620 10 O -0.396 6.396 11 N -0.373 5.373 12 C -0.001 4.001 13 C -0.085 4.085 14 N -0.239 5.239 15 C -0.130 4.130 16 C -0.084 4.084 17 C 0.228 3.772 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.246 0.754 34 H 0.232 0.768 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.120 4.425 26.744 27.790 hybrid contribution 1.481 0.517 -1.351 2.070 sum -4.639 4.942 25.393 26.283 Atomic orbital electron populations 1.22786 0.79847 1.03270 1.00361 1.87909 1.20492 1.26139 1.95540 1.20580 0.84060 0.86338 1.02659 1.24380 0.97525 1.01163 0.86643 1.73697 0.89477 1.17606 1.23475 1.84605 1.21659 1.66157 1.23179 1.26449 1.00283 0.98249 0.83964 1.22344 0.92830 1.13562 0.95646 1.16735 0.85492 0.76929 0.82874 1.90828 1.18257 1.48734 1.81751 1.45723 1.09476 1.75217 1.06851 1.21412 0.97663 1.03789 0.77194 1.22253 0.95480 1.01471 0.89294 1.61432 1.30143 1.31841 1.00480 1.22635 0.98226 0.87226 1.04921 1.21873 0.91436 1.01122 0.93979 1.19697 0.86923 0.84558 0.85978 1.90497 1.17358 1.56068 1.82081 1.41868 1.09430 1.61069 1.07719 1.19756 0.95843 1.44079 0.83089 0.87816 1.25263 0.94925 0.97326 1.00458 1.69618 1.01303 1.48536 1.34872 0.85801 0.79046 0.77821 0.81686 1.19199 1.20793 1.20745 0.93283 0.89178 0.93903 0.91310 0.89243 0.75431 0.76844 0.89813 0.90771 0.94466 0.90159 0.96585 0.88323 0.91825 0.93312 0.89281 0.77509 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.38 10.69 -35.23 -0.38 -4.76 16 3 C 0.14 1.41 6.20 36.01 0.22 1.64 16 4 C 0.07 0.70 7.21 -79.77 -0.58 0.12 16 5 N -0.34 -3.48 12.01 34.78 0.42 -3.06 16 6 O 0.11 0.84 11.06 18.64 0.21 1.04 16 7 C -0.01 -0.04 11.85 30.41 0.36 0.32 16 8 C -0.24 -2.14 6.47 -102.89 -0.67 -2.81 16 9 C 0.59 6.44 7.81 -12.53 -0.10 6.34 16 10 O -0.52 -7.62 15.70 5.27 0.08 -7.54 16 11 N -0.72 -5.97 5.55 -61.39 -0.34 -6.31 16 12 C 0.12 1.31 5.60 -4.04 -0.02 1.29 16 13 C 0.04 0.47 5.07 -3.82 -0.02 0.45 16 14 N -0.51 -7.93 4.50 -244.36 -1.10 -9.03 16 15 C 0.02 0.27 8.96 60.06 0.54 0.81 16 16 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 17 C 0.44 10.11 7.47 -10.98 -0.08 10.03 16 18 O -0.58 -15.15 13.91 5.55 0.08 -15.07 16 19 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 20 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 24 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.91 7.11 -51.93 -0.37 0.54 16 33 H 0.23 0.00 7.68 -52.49 -0.40 -0.40 16 34 H 0.40 1.80 7.66 -40.82 -0.31 1.49 16 35 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 36 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 37 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 38 H 0.08 0.75 7.93 -51.93 -0.41 0.33 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 41 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 42 H 0.05 0.73 8.12 -51.92 -0.42 0.31 16 43 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 44 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 45 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -35.82 386.53 -5.16 -40.99 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.10 Total: 7.01 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 0.50 Total: 12.48 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.36 Total: -55.75 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.01 Total: -26.32 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.82 -5.16 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713472827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.238 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds