Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99697 * 2 1 4 4 O 1.21281 * 120.00165 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99946 * 359.97438 * 3 2 1 6 6 S 1.81000 * 109.46948 * 179.97438 * 5 3 2 7 7 C 1.76198 * 99.99977 * 180.02562 * 6 5 3 8 8 H 1.08000 * 120.00048 * 359.97438 * 7 6 5 9 9 C 1.38801 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31631 * 119.99995 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99900 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47221 * 269.99499 * 11 9 7 13 13 H 1.48500 * 109.47106 * 150.00136 * 11 9 7 14 14 H 1.48500 * 109.47356 * 29.99991 * 11 9 7 15 15 C 1.46497 * 120.00350 * 180.02562 * 2 1 3 16 16 H 1.08999 * 110.27606 * 182.09050 * 15 2 1 17 17 C 1.54595 * 110.30669 * 304.28150 * 15 2 1 18 18 C 1.54944 * 102.92072 * 96.96149 * 17 15 2 19 19 N 1.48527 * 103.22561 * 37.41153 * 18 17 15 20 20 C 1.46898 * 110.99732 * 200.28145 * 19 18 17 21 21 C 1.50699 * 109.47440 * 301.69654 * 20 19 18 22 22 N 1.31073 * 126.65826 * 94.84982 * 21 20 19 23 23 N 1.28847 * 107.98710 * 179.90077 * 22 21 20 24 24 N 1.28736 * 109.39939 * 0.37478 * 23 22 21 25 25 N 1.29022 * 108.81009 * 359.77060 * 24 23 22 26 26 C 1.46495 * 126.44069 * 180.02562 * 25 24 23 27 27 C 1.47901 * 105.82050 * 320.79566 * 19 18 17 28 28 H 1.08996 * 109.47266 * 90.00514 * 1 2 3 29 29 H 1.09004 * 109.46661 * 209.99987 * 1 2 3 30 30 H 1.08994 * 109.47296 * 329.99691 * 1 2 3 31 31 H 1.08997 * 109.47190 * 60.00397 * 5 3 2 32 32 H 1.08999 * 109.47314 * 299.99973 * 5 3 2 33 33 H 0.97004 * 119.99901 * 0.02562 * 10 9 7 34 34 H 1.09002 * 110.72580 * 215.31259 * 17 15 2 35 35 H 1.08997 * 110.72973 * 338.60296 * 17 15 2 36 36 H 1.09003 * 110.66126 * 278.97711 * 18 17 15 37 37 H 1.08997 * 110.80898 * 155.91966 * 18 17 15 38 38 H 1.08995 * 109.47748 * 61.70132 * 20 19 18 39 39 H 1.09005 * 109.47197 * 181.69973 * 20 19 18 40 40 H 1.08999 * 109.47330 * 274.91055 * 26 25 24 41 41 H 1.09008 * 109.46703 * 34.90886 * 26 25 24 42 42 H 1.09000 * 109.47467 * 154.90797 * 26 25 24 43 43 H 1.09000 * 109.91373 * 265.97568 * 27 19 18 44 44 H 1.09008 * 110.08039 * 144.77872 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5614 3.8481 0.0003 7 6 1.4413 5.2082 0.0002 8 1 0.3760 5.0305 -0.0007 9 6 1.9279 6.5081 0.0003 10 7 3.2263 6.7248 0.0009 11 14 0.7403 7.9500 0.0009 12 1 0.4253 8.3324 -1.3990 13 1 1.3618 9.1028 0.7009 14 1 -0.5101 7.5612 0.7013 15 6 2.1976 -1.2687 -0.0006 16 1 3.2713 -1.0848 0.0368 17 6 1.7587 -2.1422 1.1970 18 6 0.7044 -3.0877 0.5682 19 7 1.2612 -3.3689 -0.7797 20 6 0.2132 -3.8419 -1.6939 21 6 -0.4236 -5.0850 -1.1280 22 7 -1.5131 -5.1450 -0.4019 23 7 -1.7324 -6.3818 -0.1149 24 7 -0.8067 -7.1115 -0.6325 25 7 0.0194 -6.3487 -1.2652 26 6 1.2144 -6.7773 -1.9960 27 6 1.8395 -2.0920 -1.2515 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 0.7583 2.5303 0.8892 32 1 0.7589 2.5299 -0.8908 33 1 3.8430 5.9760 0.0010 34 1 2.6018 -2.7110 1.5891 35 1 1.3094 -1.5286 1.9779 36 1 -0.2613 -2.5885 0.4891 37 1 0.6146 -4.0070 1.1470 38 1 -0.5441 -3.0668 -1.8108 39 1 0.6534 -4.0691 -2.6649 40 1 2.0519 -6.8646 -1.3038 41 1 1.0271 -7.7440 -2.4636 42 1 1.4535 -6.0422 -2.7646 43 1 1.1080 -1.5533 -1.8539 44 1 2.7370 -2.2825 -1.8402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713990591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = 102.716724 kcal Electronic energy + Delta-G solvation = -27067.735598 eV Core-core repulsion = 23184.899655 eV Total energy + Delta-G solvation = -3882.835943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.59384 -40.51523 -38.65063 -36.15070 -35.45319 -33.63460 -32.56463 -31.53113 -29.85579 -29.13985 -28.51478 -27.17934 -26.13388 -24.86075 -23.86025 -22.79199 -21.52112 -21.35055 -19.22550 -18.29853 -17.88591 -17.80597 -17.30809 -16.69071 -16.16621 -15.66787 -15.39574 -15.22746 -14.79450 -14.30351 -14.28079 -14.19993 -13.87386 -13.49242 -13.27554 -13.10326 -12.99530 -12.67865 -12.48337 -12.42052 -12.39263 -12.29548 -12.09228 -11.96537 -11.79662 -11.59136 -11.56761 -11.30865 -11.19892 -10.93767 -10.56877 -10.21722 -9.61358 -9.54656 -9.17303 -9.04653 -8.69656 -8.26338 -6.71788 -6.65673 -4.04093 0.75998 1.54345 1.79249 2.68205 2.83238 3.19093 3.30637 3.36234 3.39388 3.53252 3.55330 3.72732 4.09010 4.13746 4.20959 4.35366 4.38867 4.62797 4.72360 4.72932 4.76761 4.81691 4.86686 4.97743 5.00605 5.01087 5.17973 5.20099 5.24373 5.27313 5.37591 5.46761 5.54010 5.59753 5.65770 5.69187 5.77200 5.82674 5.95127 6.05601 6.23429 6.53260 7.32067 7.88690 8.18903 8.34818 8.46617 9.23318 10.78240 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029460 B = 0.002016 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.197852 B =13885.074335 C =14346.411749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.617 5.617 3 C 0.534 3.466 4 O -0.515 6.515 5 C -0.127 4.127 6 S -0.117 6.117 7 C -0.607 4.607 8 H 0.066 0.934 9 C 0.035 3.965 10 N -0.884 5.884 11 Si 1.087 2.913 12 H -0.284 1.284 13 H -0.280 1.280 14 H -0.287 1.287 15 C 0.133 3.867 16 H 0.115 0.885 17 C -0.132 4.132 18 C 0.032 3.968 19 N -0.512 5.512 20 C 0.124 3.876 21 C 0.191 3.809 22 N -0.298 5.298 23 N -0.075 5.075 24 N -0.096 5.096 25 N -0.297 5.297 26 C 0.082 3.918 27 C 0.028 3.972 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.278 0.722 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.544 -26.753 -5.123 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.353 5.353 3 C 0.322 3.678 4 O -0.389 6.389 5 C -0.278 4.278 6 S 0.109 5.891 7 C -0.755 4.755 8 H 0.084 0.916 9 C -0.175 4.175 10 N -0.518 5.518 11 Si 0.913 3.087 12 H -0.210 1.210 13 H -0.205 1.205 14 H -0.213 1.213 15 C 0.029 3.971 16 H 0.133 0.867 17 C -0.171 4.171 18 C -0.095 4.095 19 N -0.238 5.238 20 C -0.007 4.007 21 C -0.088 4.088 22 N -0.149 5.149 23 N -0.069 5.069 24 N -0.082 5.082 25 N -0.099 5.099 26 C -0.060 4.060 27 C -0.100 4.100 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.410 -26.203 -4.377 26.929 hybrid contribution -1.522 -0.851 -0.666 1.867 sum -5.933 -27.054 -5.043 28.152 Atomic orbital electron populations 1.21910 0.79818 1.03691 1.01826 1.47925 1.06672 1.05184 1.75553 1.20360 0.87942 0.84574 0.74886 1.90693 1.13698 1.86715 1.47756 1.23346 1.03561 0.95862 1.05074 1.84822 1.10860 0.96210 1.97218 1.23713 0.94750 0.93362 1.63672 0.91584 1.26061 0.99062 0.99425 0.92995 1.70774 1.02019 1.35674 1.43325 0.83291 0.73845 0.74540 0.77048 1.21042 1.20488 1.21277 1.21789 0.99125 0.82857 0.93368 0.86684 1.22885 0.99310 0.97260 0.97657 1.23422 0.97167 0.99551 0.89407 1.64959 1.27688 1.28704 1.02452 1.20738 0.94033 0.89748 0.96160 1.25807 0.94008 0.88856 1.00107 1.75054 1.13233 1.12907 1.13664 1.78648 1.15878 0.95643 1.16733 1.78905 0.99384 1.20796 1.09125 1.48366 1.20897 1.05526 1.35096 1.22419 0.82759 1.03619 0.97160 1.23299 1.00849 0.88177 0.97708 0.92778 0.90871 0.90334 0.88941 0.88992 0.90963 0.89576 0.89839 0.92056 0.90418 0.89906 0.87662 0.87959 0.87765 0.87501 0.92061 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.22 59.85 0.55 1.23 16 2 N -0.62 -7.70 2.72 -172.39 -0.47 -8.17 16 3 C 0.53 9.43 7.69 -10.98 -0.08 9.35 16 4 O -0.51 -10.99 15.22 5.56 0.08 -10.90 16 5 C -0.13 -2.49 4.71 36.01 0.17 -2.32 16 6 S -0.12 -3.10 19.60 -107.50 -2.11 -5.20 16 7 C -0.61 -17.21 9.50 30.94 0.29 -16.92 16 8 H 0.07 1.79 7.80 -52.49 -0.41 1.39 16 9 C 0.04 1.01 5.49 -17.43 -0.10 0.91 16 10 N -0.88 -27.20 13.67 55.49 0.76 -26.44 16 11 Si 1.09 24.69 29.92 -169.99 -5.09 19.60 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.13 7.11 56.52 0.40 -5.72 16 15 C 0.13 1.38 3.44 -66.58 -0.23 1.16 16 16 H 0.12 1.44 6.97 -51.93 -0.36 1.08 16 17 C -0.13 -1.16 6.14 -24.87 -0.15 -1.31 16 18 C 0.03 0.25 5.33 -1.90 -0.01 0.24 16 19 N -0.51 -3.42 5.34 -231.90 -1.24 -4.66 16 20 C 0.12 0.68 5.11 -4.98 -0.03 0.66 16 21 C 0.19 1.52 6.60 -155.43 -1.03 0.50 16 22 N -0.30 -3.34 12.31 32.70 0.40 -2.94 16 23 N -0.08 -0.93 13.43 60.35 0.81 -0.12 16 24 N -0.10 -1.00 13.29 60.35 0.80 -0.20 16 25 N -0.30 -2.13 3.75 -65.03 -0.24 -2.37 16 26 C 0.08 0.17 11.30 59.84 0.68 0.85 16 27 C 0.03 0.21 6.22 -2.76 -0.02 0.20 16 28 H 0.05 0.46 7.92 -51.93 -0.41 0.04 16 29 H 0.07 0.58 4.76 -51.93 -0.25 0.33 16 30 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 31 H 0.09 1.69 7.40 -51.92 -0.38 1.31 16 32 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 33 H 0.28 8.73 7.13 -40.82 -0.29 8.44 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 36 H 0.06 0.50 5.86 -51.93 -0.30 0.20 16 37 H 0.08 0.70 7.95 -51.93 -0.41 0.29 16 38 H 0.08 0.46 7.97 -51.93 -0.41 0.05 16 39 H 0.11 0.30 7.27 -51.93 -0.38 -0.08 16 40 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.10 0.08 8.14 -51.92 -0.42 -0.35 16 42 H 0.11 -0.01 7.11 -51.93 -0.37 -0.38 16 43 H 0.06 0.47 6.77 -51.93 -0.35 0.11 16 44 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -37.24 371.23 -6.63 -43.86 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.99 Total: -2.60 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 0.05 Total: -5.46 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.82 Total: -44.90 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.09 Total: 19.60 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.24 -6.63 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713990591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.581 kcal (2) G-P(sol) polarization free energy of solvation -37.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds