Wall clock time and date at job start Sat Apr 11 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99697 * 2 1 4 4 O 1.21281 * 120.00165 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99946 * 359.97438 * 3 2 1 6 6 S 1.81000 * 109.46948 * 179.97438 * 5 3 2 7 7 C 1.76198 * 99.99977 * 180.02562 * 6 5 3 8 8 H 1.08000 * 120.00048 * 359.97438 * 7 6 5 9 9 C 1.38801 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31631 * 119.99995 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99900 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47221 * 269.99499 * 11 9 7 13 13 H 1.48500 * 109.47106 * 150.00136 * 11 9 7 14 14 H 1.48500 * 109.47356 * 29.99991 * 11 9 7 15 15 C 1.46497 * 120.00350 * 180.02562 * 2 1 3 16 16 H 1.08999 * 110.27606 * 182.09050 * 15 2 1 17 17 C 1.54595 * 110.30669 * 304.28150 * 15 2 1 18 18 C 1.54944 * 102.92072 * 96.96149 * 17 15 2 19 19 N 1.48527 * 103.22561 * 37.41153 * 18 17 15 20 20 C 1.46898 * 110.99732 * 200.28145 * 19 18 17 21 21 C 1.50699 * 109.47440 * 301.69654 * 20 19 18 22 22 N 1.31073 * 126.65826 * 94.84982 * 21 20 19 23 23 N 1.28847 * 107.98710 * 179.90077 * 22 21 20 24 24 N 1.28736 * 109.39939 * 0.37478 * 23 22 21 25 25 N 1.29022 * 108.81009 * 359.77060 * 24 23 22 26 26 C 1.46495 * 126.44069 * 180.02562 * 25 24 23 27 27 C 1.47901 * 105.82050 * 320.79566 * 19 18 17 28 28 H 1.08996 * 109.47266 * 90.00514 * 1 2 3 29 29 H 1.09004 * 109.46661 * 209.99987 * 1 2 3 30 30 H 1.08994 * 109.47296 * 329.99691 * 1 2 3 31 31 H 1.08997 * 109.47190 * 60.00397 * 5 3 2 32 32 H 1.08999 * 109.47314 * 299.99973 * 5 3 2 33 33 H 0.97004 * 119.99901 * 0.02562 * 10 9 7 34 34 H 1.09002 * 110.72580 * 215.31259 * 17 15 2 35 35 H 1.08997 * 110.72973 * 338.60296 * 17 15 2 36 36 H 1.09003 * 110.66126 * 278.97711 * 18 17 15 37 37 H 1.08997 * 110.80898 * 155.91966 * 18 17 15 38 38 H 1.08995 * 109.47748 * 61.70132 * 20 19 18 39 39 H 1.09005 * 109.47197 * 181.69973 * 20 19 18 40 40 H 1.08999 * 109.47330 * 274.91055 * 26 25 24 41 41 H 1.09008 * 109.46703 * 34.90886 * 26 25 24 42 42 H 1.09000 * 109.47467 * 154.90797 * 26 25 24 43 43 H 1.09000 * 109.91373 * 265.97568 * 27 19 18 44 44 H 1.09008 * 110.08039 * 144.77872 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 16 2.5614 3.8481 0.0003 7 6 1.4413 5.2082 0.0002 8 1 0.3760 5.0305 -0.0007 9 6 1.9279 6.5081 0.0003 10 7 3.2263 6.7248 0.0009 11 14 0.7403 7.9500 0.0009 12 1 0.4253 8.3324 -1.3990 13 1 1.3618 9.1028 0.7009 14 1 -0.5101 7.5612 0.7013 15 6 2.1976 -1.2687 -0.0006 16 1 3.2713 -1.0848 0.0368 17 6 1.7587 -2.1422 1.1970 18 6 0.7044 -3.0877 0.5682 19 7 1.2612 -3.3689 -0.7797 20 6 0.2132 -3.8419 -1.6939 21 6 -0.4236 -5.0850 -1.1280 22 7 -1.5131 -5.1450 -0.4019 23 7 -1.7324 -6.3818 -0.1149 24 7 -0.8067 -7.1115 -0.6325 25 7 0.0194 -6.3487 -1.2652 26 6 1.2144 -6.7773 -1.9960 27 6 1.8395 -2.0920 -1.2515 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 0.7583 2.5303 0.8892 32 1 0.7589 2.5299 -0.8908 33 1 3.8430 5.9760 0.0010 34 1 2.6018 -2.7110 1.5891 35 1 1.3094 -1.5286 1.9779 36 1 -0.2613 -2.5885 0.4891 37 1 0.6146 -4.0070 1.1470 38 1 -0.5441 -3.0668 -1.8108 39 1 0.6534 -4.0691 -2.6649 40 1 2.0519 -6.8646 -1.3038 41 1 1.0271 -7.7440 -2.4636 42 1 1.4535 -6.0422 -2.7646 43 1 1.1080 -1.5533 -1.8539 44 1 2.7370 -2.2825 -1.8402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713990591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:45 Heat of formation + Delta-G solvation = 74.004364 kcal Electronic energy + Delta-G solvation = -27068.980659 eV Core-core repulsion = 23184.899655 eV Total energy + Delta-G solvation = -3884.081004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.24620 -41.49854 -39.68843 -36.77555 -36.39146 -34.74471 -34.42383 -32.35115 -30.91083 -29.79918 -29.25020 -27.91705 -27.18242 -26.80090 -24.50181 -23.40033 -22.52567 -21.95073 -20.59711 -20.00632 -18.54295 -18.42407 -18.30542 -17.65900 -17.05971 -16.74063 -16.68204 -15.98948 -15.76890 -15.70619 -15.37071 -14.89752 -14.68423 -14.55356 -14.38999 -14.23709 -13.96554 -13.75786 -13.68939 -13.57490 -13.27311 -13.12181 -12.95849 -12.84110 -12.74239 -12.60088 -12.43274 -12.26128 -12.00755 -11.94347 -11.82782 -11.53797 -11.22028 -11.10170 -10.94640 -10.31495 -9.88780 -9.59492 -8.91924 -8.86678 -6.27122 0.15627 1.04831 1.14146 1.17458 1.45617 1.51984 1.61523 1.79515 1.96435 2.33803 2.68505 2.99317 3.02690 3.09589 3.25616 3.40176 3.57916 3.67984 3.86971 4.00986 4.02341 4.10900 4.19649 4.24613 4.28421 4.30559 4.35875 4.39349 4.43793 4.52537 4.55730 4.64457 4.76818 4.77721 4.85162 4.88889 5.00334 5.05985 5.18203 5.33649 5.63705 5.65010 5.70283 6.14109 6.16453 7.03068 7.06728 7.49775 8.51568 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029460 B = 0.002016 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.197852 B =13885.074335 C =14346.411749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.600 5.600 3 C 0.534 3.466 4 O -0.562 6.562 5 C -0.104 4.104 6 S -0.196 6.196 7 C -0.612 4.612 8 H 0.074 0.926 9 C -0.020 4.020 10 N -0.913 5.913 11 Si 1.138 2.862 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.263 1.263 15 C 0.127 3.873 16 H 0.091 0.909 17 C -0.126 4.126 18 C 0.040 3.960 19 N -0.506 5.506 20 C 0.125 3.875 21 C 0.195 3.805 22 N -0.326 5.326 23 N -0.113 5.113 24 N -0.110 5.110 25 N -0.286 5.286 26 C 0.067 3.933 27 C 0.039 3.961 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.261 0.739 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.118 0.882 42 H 0.136 0.864 43 H 0.070 0.930 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 -27.842 -6.510 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.334 5.334 3 C 0.322 3.678 4 O -0.440 6.440 5 C -0.256 4.256 6 S 0.031 5.969 7 C -0.759 4.759 8 H 0.093 0.907 9 C -0.223 4.223 10 N -0.549 5.549 11 Si 0.956 3.044 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.187 1.187 15 C 0.023 3.977 16 H 0.109 0.891 17 C -0.164 4.164 18 C -0.087 4.087 19 N -0.231 5.231 20 C -0.006 4.006 21 C -0.083 4.083 22 N -0.177 5.177 23 N -0.107 5.107 24 N -0.097 5.097 25 N -0.089 5.089 26 C -0.072 4.072 27 C -0.089 4.089 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.159 0.841 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.088 0.912 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.092 -27.371 -5.776 28.629 hybrid contribution -0.988 -0.704 -0.254 1.240 sum -7.080 -28.075 -6.030 29.576 Atomic orbital electron populations 1.22186 0.77523 1.04651 1.03550 1.47870 1.07983 1.04301 1.73224 1.20042 0.87242 0.85334 0.75185 1.90682 1.15483 1.87339 1.50480 1.23238 1.01800 0.93930 1.06587 1.85044 1.14756 0.99624 1.97450 1.24035 0.95216 0.93995 1.62671 0.90737 1.27808 0.99743 1.02962 0.91774 1.70893 1.03055 1.34982 1.45931 0.82693 0.72435 0.71094 0.78194 1.19223 1.20553 1.18729 1.21946 0.97698 0.82229 0.95850 0.89109 1.22812 0.99725 0.97023 0.96888 1.23284 0.96760 0.98671 0.89997 1.64960 1.28120 1.27982 1.02063 1.20978 0.93953 0.88713 0.96930 1.26130 0.93254 0.89769 0.99176 1.74950 1.15028 1.12797 1.14959 1.78614 1.17293 0.96359 1.18391 1.78812 0.99824 1.21449 1.09636 1.48714 1.21088 1.05059 1.34032 1.22936 0.81115 1.05394 0.97716 1.23176 1.01651 0.87952 0.96096 0.90588 0.88876 0.90553 0.87476 0.87184 0.92809 0.89261 0.90485 0.91909 0.91450 0.89275 0.84107 0.87015 0.86339 0.84615 0.91211 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 9.22 127.77 1.18 2.18 16 2 N -0.60 -13.88 2.72 -817.70 -2.23 -16.11 16 3 C 0.53 18.58 7.69 87.66 0.67 19.26 16 4 O -0.56 -24.50 15.22 -3.03 -0.05 -24.55 16 5 C -0.10 -3.98 4.71 71.24 0.34 -3.65 16 6 S -0.20 -10.54 19.60 -56.49 -1.11 -11.65 16 7 C -0.61 -34.70 9.50 67.95 0.65 -34.05 16 8 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 9 C -0.02 -1.13 5.49 84.86 0.47 -0.66 16 10 N -0.91 -57.45 13.67 21.65 0.30 -57.15 16 11 Si 1.14 48.74 29.92 68.60 2.05 50.79 16 12 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 15 C 0.13 2.43 3.44 45.87 0.16 2.58 16 16 H 0.09 2.26 6.97 -2.39 -0.02 2.24 16 17 C -0.13 -2.01 6.14 31.80 0.20 -1.81 16 18 C 0.04 0.55 5.33 86.65 0.46 1.01 16 19 N -0.51 -5.09 5.34 -887.59 -4.74 -9.83 16 20 C 0.12 0.89 5.11 85.56 0.44 1.33 16 21 C 0.20 2.66 6.60 138.13 0.91 3.57 16 22 N -0.33 -6.95 12.31 -50.45 -0.62 -7.57 16 23 N -0.11 -2.77 13.43 37.01 0.50 -2.27 16 24 N -0.11 -2.20 13.29 37.02 0.49 -1.71 16 25 N -0.29 -3.47 3.75 -359.64 -1.35 -4.82 16 26 C 0.07 0.07 11.30 127.77 1.44 1.51 16 27 C 0.04 0.48 6.22 86.44 0.54 1.01 16 28 H 0.08 0.96 7.92 -2.39 -0.02 0.94 16 29 H 0.09 1.17 4.76 -2.38 -0.01 1.16 16 30 H 0.08 1.31 6.44 -2.39 -0.02 1.29 16 31 H 0.11 3.77 7.40 -2.40 -0.02 3.75 16 32 H 0.11 3.79 8.11 -2.40 -0.02 3.77 16 33 H 0.26 17.06 7.13 -92.71 -0.66 16.40 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.35 7.89 -2.39 -0.02 1.33 16 36 H 0.06 0.85 5.86 -2.39 -0.01 0.83 16 37 H 0.07 1.11 7.95 -2.39 -0.02 1.09 16 38 H 0.09 0.62 7.97 -2.39 -0.02 0.60 16 39 H 0.14 0.06 7.27 -2.38 -0.02 0.04 16 40 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.12 -0.18 8.14 -2.38 -0.02 -0.20 16 42 H 0.14 -0.64 7.11 -2.39 -0.02 -0.66 16 43 H 0.07 0.77 6.77 -2.39 -0.02 0.75 16 44 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -85.28 371.23 1.83 -83.46 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.14 Total: 9.13 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 7.44 Total: -7.72 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -7.66 Total: -99.47 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.05 Total: -24.55 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.05 Total: 50.79 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.11 Total: -11.65 kcal Total: -85.28 1.83 -83.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713990591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.462 kcal (2) G-P(sol) polarization free energy of solvation -85.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds