Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46795 * 2 1 4 4 N 1.28437 * 125.18738 * 84.96930 * 3 2 1 5 5 C 1.30838 * 110.98467 * 179.97438 * 4 3 2 6 6 C 1.39816 * 107.87350 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 127.33483 * 179.97438 * 6 5 4 8 8 C 1.36745 * 125.18880 * 265.24192 * 3 2 1 9 9 C 1.47033 * 126.90684 * 0.02562 * 8 3 2 10 10 O 1.21639 * 119.99921 * 100.00676 * 9 8 3 11 11 N 1.34782 * 119.99723 * 280.00743 * 9 8 3 12 12 C 1.46921 * 120.63020 * 354.56547 * 11 9 8 13 13 C 1.52764 * 109.00734 * 233.58336 * 12 11 9 14 14 C 1.53042 * 109.38199 * 305.58820 * 13 12 11 15 15 C 1.53042 * 109.53582 * 61.24314 * 14 13 12 16 16 H 1.08996 * 109.52401 * 58.59949 * 15 14 13 17 17 C 1.53001 * 109.49621 * 178.68042 * 15 14 13 18 18 N 1.46495 * 109.46997 * 184.83446 * 17 15 14 19 19 C 1.36936 * 119.99803 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00362 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00059 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00126 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47038 * 60.00075 * 23 21 19 25 25 H 1.48501 * 109.47209 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47314 * 299.99911 * 23 21 19 27 27 C 1.46925 * 120.62632 * 174.84388 * 11 9 8 28 28 H 1.08996 * 109.47170 * 304.99276 * 1 2 3 29 29 H 1.08995 * 109.47147 * 65.00106 * 1 2 3 30 30 H 1.09006 * 109.46769 * 184.99094 * 1 2 3 31 31 H 1.08998 * 109.46989 * 240.00523 * 2 1 3 32 32 H 1.08996 * 109.46993 * 120.00151 * 2 1 3 33 33 H 1.07995 * 126.06349 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.58955 * 353.42093 * 12 11 9 35 35 H 1.09004 * 109.58938 * 113.84438 * 12 11 9 36 36 H 1.09001 * 109.56288 * 185.55728 * 13 12 11 37 37 H 1.08997 * 109.38358 * 65.51754 * 13 12 11 38 38 H 1.09000 * 109.46189 * 301.21585 * 14 13 12 39 39 H 1.09002 * 109.44356 * 181.25052 * 14 13 12 40 40 H 1.08999 * 109.46895 * 304.83542 * 17 15 14 41 41 H 1.09001 * 109.46939 * 64.83206 * 17 15 14 42 42 H 0.96998 * 119.99996 * 0.02562 * 18 17 15 43 43 H 0.96999 * 120.00164 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.58581 * 246.15031 * 27 11 9 45 45 H 1.08997 * 109.58983 * 6.44483 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1782 2.1097 1.0456 5 6 2.6280 3.2960 0.7259 6 6 2.7730 3.3397 -0.6640 7 17 3.3340 4.6739 -1.6226 8 6 2.3683 2.0933 -1.1137 9 6 2.3266 1.6286 -2.5081 10 8 1.3972 1.9440 -3.2267 11 7 3.3182 0.8532 -2.9899 12 6 4.5044 0.5617 -2.1735 13 6 5.7569 0.9325 -2.9657 14 6 5.7328 0.2168 -4.3182 15 6 4.5053 0.6669 -5.1136 16 1 4.5377 1.7474 -5.2531 17 6 4.4998 -0.0243 -6.4786 18 7 3.3901 0.4928 -7.2833 19 6 3.1842 0.0179 -8.5510 20 1 3.8401 -0.7375 -8.9579 21 6 2.1331 0.5082 -9.3137 22 7 1.3340 1.4292 -8.8181 23 14 1.8527 -0.1391 -11.0433 24 1 1.6053 -1.6024 -10.9902 25 1 0.6751 0.5400 -11.6412 26 1 3.0542 0.1300 -11.8735 27 6 3.2360 0.2884 -4.3438 28 1 -0.3633 0.5893 0.8419 29 1 -0.3633 0.4343 -0.9313 30 1 -0.3633 -1.0238 0.0894 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.8482 4.0991 1.4136 34 1 4.4684 1.1468 -1.2546 35 1 4.5296 -0.5009 -1.9318 36 1 6.6438 0.6291 -2.4093 37 1 5.7783 2.0106 -3.1248 38 1 5.6871 -0.8605 -4.1583 39 1 6.6368 0.4631 -4.8752 40 1 5.4421 0.1733 -6.9897 41 1 4.3792 -1.0988 -6.3413 42 1 2.8012 1.1715 -6.9180 43 1 0.5997 1.7720 -9.3512 44 1 3.1557 -0.7968 -4.2827 45 1 2.3621 0.6914 -4.8554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714064372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = 47.332179 kcal Electronic energy + Delta-G solvation = -28211.804737 eV Core-core repulsion = 24292.230682 eV Total energy + Delta-G solvation = -3919.574055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.91434 -40.02083 -37.64496 -36.72490 -35.01254 -34.83577 -33.01709 -31.78991 -31.06704 -30.09201 -29.69017 -25.96862 -25.56212 -24.43028 -23.19184 -22.70617 -21.84632 -21.32652 -20.06658 -19.21612 -18.06026 -17.02445 -16.69948 -16.27718 -15.73041 -15.58550 -15.05319 -14.73548 -14.58455 -14.54291 -14.25486 -13.78819 -13.62977 -13.49248 -13.20541 -13.03774 -12.95574 -12.57969 -12.49737 -12.39778 -12.03724 -11.86041 -11.70113 -11.57331 -11.13202 -11.04222 -10.84384 -10.71118 -10.67418 -10.44244 -10.35712 -10.16334 -9.96408 -9.61323 -9.51058 -8.94932 -8.85262 -8.67227 -6.88722 -5.70551 -3.00786 1.23737 1.56526 2.16350 2.25870 2.57365 2.93372 3.46771 3.50847 3.52643 4.05703 4.13513 4.49710 4.58658 4.63054 4.67681 4.73979 4.81501 4.91867 4.96867 5.09421 5.14101 5.19605 5.24585 5.37882 5.38407 5.56637 5.62207 5.72739 5.74902 5.79643 5.86983 5.91741 6.04981 6.09061 6.16815 6.30509 6.34894 6.47192 6.52881 6.74863 6.85561 7.24052 7.63598 7.72994 7.96928 8.46882 9.57881 10.15436 10.49609 11.51497 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.003086 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.814894 B = 9070.581210 C = 9256.863396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.264 5.264 4 N -0.272 5.272 5 C 0.023 3.977 6 C -0.119 4.119 7 Cl -0.017 7.017 8 C 0.002 3.998 9 C 0.584 3.416 10 O -0.498 6.498 11 N -0.598 5.598 12 C 0.107 3.893 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.108 4.108 16 H 0.076 0.924 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.244 4.244 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.120 3.880 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.194 0.806 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.022 0.978 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.071 0.929 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.608 -1.723 23.962 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.004 4.004 3 N -0.053 5.053 4 N -0.103 5.103 5 C -0.156 4.156 6 C -0.157 4.157 7 Cl 0.012 6.988 8 C -0.129 4.129 9 C 0.367 3.633 10 O -0.370 6.370 11 N -0.331 5.331 12 C -0.016 4.016 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.127 4.127 16 H 0.095 0.905 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.001 4.001 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.211 0.789 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.037 0.963 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.754 -2.364 24.225 25.011 hybrid contribution -0.017 0.607 -1.569 1.682 sum 5.737 -1.756 22.656 23.437 Atomic orbital electron populations 1.22195 0.92837 1.03944 1.04093 1.22126 0.96742 0.76021 1.05468 1.45764 1.45610 1.12266 1.01676 1.73207 1.19287 1.04283 1.13482 1.23501 1.03697 0.95636 0.92725 1.21273 1.11212 0.90567 0.92679 1.98374 1.87427 1.42517 1.70491 1.21317 1.08184 0.93496 0.89864 1.16951 0.83163 0.78849 0.84340 1.90951 1.34207 1.54084 1.57746 1.48157 1.18884 1.49124 1.16966 1.21658 0.85119 1.00851 0.93934 1.21818 0.96632 1.01735 0.96874 1.21528 0.98493 1.00022 0.94940 1.21697 0.93561 1.01721 0.95732 0.90530 1.20624 0.92219 0.95476 0.88367 1.42409 1.32522 1.48601 1.14269 1.19149 1.10076 1.17665 0.90654 0.91291 1.24754 0.98242 0.99255 0.98530 1.69663 1.19327 1.31574 1.37118 0.86292 0.77212 0.78110 0.84680 1.21311 1.21696 1.21316 1.21855 1.00732 0.97911 0.79574 0.91120 0.91128 0.89659 0.88125 0.87408 0.78899 0.90546 0.91219 0.90694 0.91191 0.91705 0.91281 0.95989 0.96255 0.78060 0.93406 0.91083 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.12 0.93 6.91 -4.04 -0.03 0.90 16 3 N -0.26 -2.91 3.35 -57.11 -0.19 -3.10 16 4 N -0.27 -3.02 11.89 30.61 0.36 -2.66 16 5 C 0.02 0.24 12.04 -17.38 -0.21 0.03 16 6 C -0.12 -1.50 6.89 -38.88 -0.27 -1.77 16 7 Cl -0.02 -0.21 29.24 -51.86 -1.52 -1.73 16 8 C 0.00 0.02 4.67 -82.00 -0.38 -0.36 16 9 C 0.58 9.14 6.80 -12.69 -0.09 9.06 16 10 O -0.50 -10.10 16.52 5.24 0.09 -10.01 16 11 N -0.60 -8.13 2.98 -174.45 -0.52 -8.65 16 12 C 0.11 1.08 6.29 -3.93 -0.02 1.06 16 13 C -0.13 -1.31 6.06 -26.83 -0.16 -1.47 16 14 C -0.11 -1.30 5.17 -26.69 -0.14 -1.43 16 15 C -0.11 -1.69 2.38 -90.50 -0.21 -1.91 16 16 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 17 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 18 N -0.73 -18.68 5.38 -59.91 -0.32 -19.01 16 19 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 23 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.12 1.91 5.53 -3.71 -0.02 1.89 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.78 7.66 -51.93 -0.40 0.38 16 32 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.08 0.75 6.38 -51.93 -0.33 0.42 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.39 10.54 6.90 -40.82 -0.28 10.26 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.11 2.15 6.20 -51.93 -0.32 1.83 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -34.32 384.58 -8.82 -43.15 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.80 Total: 6.00 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.42 Total: 0.65 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.06 Total: -61.52 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.32 -8.82 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714064372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.479 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds