Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46795 * 2 1 4 4 N 1.28437 * 125.18738 * 84.96930 * 3 2 1 5 5 C 1.30838 * 110.98467 * 179.97438 * 4 3 2 6 6 C 1.39816 * 107.87350 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 127.33483 * 179.97438 * 6 5 4 8 8 C 1.36745 * 125.18880 * 265.24192 * 3 2 1 9 9 C 1.47033 * 126.90684 * 0.02562 * 8 3 2 10 10 O 1.21639 * 119.99921 * 100.00676 * 9 8 3 11 11 N 1.34782 * 119.99723 * 280.00743 * 9 8 3 12 12 C 1.46921 * 120.63020 * 354.56547 * 11 9 8 13 13 C 1.52764 * 109.00734 * 233.58336 * 12 11 9 14 14 C 1.53042 * 109.38199 * 305.58820 * 13 12 11 15 15 C 1.53042 * 109.53582 * 61.24314 * 14 13 12 16 16 H 1.08996 * 109.52401 * 58.59949 * 15 14 13 17 17 C 1.53001 * 109.49621 * 178.68042 * 15 14 13 18 18 N 1.46495 * 109.46997 * 184.83446 * 17 15 14 19 19 C 1.36936 * 119.99803 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00362 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00059 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00126 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00084 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47038 * 60.00075 * 23 21 19 25 25 H 1.48501 * 109.47209 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47314 * 299.99911 * 23 21 19 27 27 C 1.46925 * 120.62632 * 174.84388 * 11 9 8 28 28 H 1.08996 * 109.47170 * 304.99276 * 1 2 3 29 29 H 1.08995 * 109.47147 * 65.00106 * 1 2 3 30 30 H 1.09006 * 109.46769 * 184.99094 * 1 2 3 31 31 H 1.08998 * 109.46989 * 240.00523 * 2 1 3 32 32 H 1.08996 * 109.46993 * 120.00151 * 2 1 3 33 33 H 1.07995 * 126.06349 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.58955 * 353.42093 * 12 11 9 35 35 H 1.09004 * 109.58938 * 113.84438 * 12 11 9 36 36 H 1.09001 * 109.56288 * 185.55728 * 13 12 11 37 37 H 1.08997 * 109.38358 * 65.51754 * 13 12 11 38 38 H 1.09000 * 109.46189 * 301.21585 * 14 13 12 39 39 H 1.09002 * 109.44356 * 181.25052 * 14 13 12 40 40 H 1.08999 * 109.46895 * 304.83542 * 17 15 14 41 41 H 1.09001 * 109.46939 * 64.83206 * 17 15 14 42 42 H 0.96998 * 119.99996 * 0.02562 * 18 17 15 43 43 H 0.96999 * 120.00164 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.58581 * 246.15031 * 27 11 9 45 45 H 1.08997 * 109.58983 * 6.44483 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1782 2.1097 1.0456 5 6 2.6280 3.2960 0.7259 6 6 2.7730 3.3397 -0.6640 7 17 3.3340 4.6739 -1.6226 8 6 2.3683 2.0933 -1.1137 9 6 2.3266 1.6286 -2.5081 10 8 1.3972 1.9440 -3.2267 11 7 3.3182 0.8532 -2.9899 12 6 4.5044 0.5617 -2.1735 13 6 5.7569 0.9325 -2.9657 14 6 5.7328 0.2168 -4.3182 15 6 4.5053 0.6669 -5.1136 16 1 4.5377 1.7474 -5.2531 17 6 4.4998 -0.0243 -6.4786 18 7 3.3901 0.4928 -7.2833 19 6 3.1842 0.0179 -8.5510 20 1 3.8401 -0.7375 -8.9579 21 6 2.1331 0.5082 -9.3137 22 7 1.3340 1.4292 -8.8181 23 14 1.8527 -0.1391 -11.0433 24 1 1.6053 -1.6024 -10.9902 25 1 0.6751 0.5400 -11.6412 26 1 3.0542 0.1300 -11.8735 27 6 3.2360 0.2884 -4.3438 28 1 -0.3633 0.5893 0.8419 29 1 -0.3633 0.4343 -0.9313 30 1 -0.3633 -1.0238 0.0894 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.8482 4.0991 1.4136 34 1 4.4684 1.1468 -1.2546 35 1 4.5296 -0.5009 -1.9318 36 1 6.6438 0.6291 -2.4093 37 1 5.7783 2.0106 -3.1248 38 1 5.6871 -0.8605 -4.1583 39 1 6.6368 0.4631 -4.8752 40 1 5.4421 0.1733 -6.9897 41 1 4.3792 -1.0988 -6.3413 42 1 2.8012 1.1715 -6.9180 43 1 0.5997 1.7720 -9.3512 44 1 3.1557 -0.7968 -4.2827 45 1 2.3621 0.6914 -4.8554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714064372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = 24.678993 kcal Electronic energy + Delta-G solvation = -28212.787052 eV Core-core repulsion = 24292.230682 eV Total energy + Delta-G solvation = -3920.556371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.80604 -41.19718 -38.92334 -37.70599 -36.66009 -35.60926 -34.55743 -33.17612 -32.20249 -31.28500 -30.85994 -27.41744 -26.88052 -25.18104 -24.90574 -23.73212 -22.80596 -22.58297 -21.26468 -20.19097 -19.25961 -18.89741 -17.82243 -17.18904 -16.77331 -16.67489 -16.62167 -16.12775 -15.56155 -15.48068 -15.37045 -15.30319 -15.04660 -14.59343 -14.38140 -14.17506 -14.04947 -13.93303 -13.75065 -13.17177 -13.03232 -12.94266 -12.88742 -12.81214 -12.68673 -12.39629 -12.22352 -12.12571 -11.94179 -11.88895 -11.66806 -11.61876 -11.37614 -11.29620 -10.93805 -10.38997 -9.89683 -9.84168 -9.00112 -7.93362 -5.23879 0.26421 0.64364 1.10630 1.36668 1.45850 1.49785 1.53258 1.56144 1.92912 2.56274 3.07516 3.39087 3.39566 3.66275 3.82302 3.83996 3.85936 3.87819 4.01933 4.08960 4.15238 4.17431 4.23097 4.29410 4.39660 4.53578 4.60639 4.69657 4.72280 4.75213 4.83260 4.88281 5.03937 5.05803 5.06732 5.10208 5.20902 5.33068 5.35298 5.46986 5.50959 5.51265 6.10701 6.26742 6.75898 6.79623 7.32575 8.09546 8.31059 9.29762 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.003086 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.814894 B = 9070.581210 C = 9256.863396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.257 5.257 4 N -0.270 5.270 5 C 0.030 3.970 6 C -0.130 4.130 7 Cl -0.027 7.027 8 C -0.015 4.015 9 C 0.585 3.415 10 O -0.560 6.560 11 N -0.589 5.589 12 C 0.103 3.897 13 C -0.126 4.126 14 C -0.104 4.104 15 C -0.096 4.096 16 H 0.048 0.952 17 C 0.159 3.841 18 N -0.749 5.749 19 C -0.247 4.247 20 H 0.080 0.920 21 C -0.078 4.078 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.274 1.274 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.128 3.872 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.225 0.775 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.033 0.967 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.089 0.911 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 -3.773 26.094 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.046 5.046 4 N -0.101 5.101 5 C -0.147 4.147 6 C -0.168 4.168 7 Cl 0.002 6.998 8 C -0.146 4.146 9 C 0.370 3.630 10 O -0.437 6.437 11 N -0.320 5.320 12 C -0.018 4.018 13 C -0.164 4.164 14 C -0.142 4.142 15 C -0.115 4.115 16 H 0.066 0.934 17 C 0.032 3.968 18 N -0.392 5.392 19 C -0.378 4.378 20 H 0.098 0.902 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.804 3.196 24 H -0.200 1.200 25 H -0.225 1.225 26 H -0.202 1.202 27 C 0.006 3.994 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.159 0.841 33 H 0.242 0.758 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.107 0.893 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.084 -4.469 26.399 27.968 hybrid contribution -0.661 1.204 -2.160 2.559 sum 7.423 -3.265 24.239 25.560 Atomic orbital electron populations 1.22169 0.93067 1.05266 1.02115 1.22469 0.96556 0.74846 1.07204 1.46056 1.44787 1.12969 1.00782 1.73233 1.19114 1.04525 1.13183 1.23985 1.02546 0.96130 0.92085 1.21485 1.11691 0.90061 0.93591 1.98369 1.87537 1.42957 1.70966 1.20994 1.09960 0.94405 0.89195 1.17282 0.82546 0.78165 0.85048 1.90920 1.36663 1.56557 1.59560 1.48198 1.19640 1.47942 1.16250 1.21997 0.83336 1.02977 0.93515 1.21815 0.97902 1.00597 0.96121 1.21503 0.96034 1.01424 0.95191 1.21555 0.95832 0.99603 0.94559 0.93381 1.20837 0.90181 0.96166 0.89571 1.42681 1.33830 1.48379 1.14281 1.19640 1.09570 1.16983 0.91628 0.90172 1.25642 0.98501 1.00065 1.02833 1.69864 1.20138 1.33626 1.38619 0.85182 0.76888 0.77778 0.79727 1.20040 1.22501 1.20191 1.21572 0.98779 0.98486 0.80612 0.91332 0.94452 0.87003 0.87899 0.84073 0.75812 0.89805 0.87986 0.86906 0.92835 0.89515 0.90477 0.95571 0.94949 0.79821 0.94189 0.89337 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 71.98 0.74 -1.81 16 2 C 0.11 1.51 6.91 86.38 0.60 2.11 16 3 N -0.26 -5.27 3.35 -334.59 -1.12 -6.40 16 4 N -0.27 -5.38 11.89 -57.06 -0.68 -6.06 16 5 C 0.03 0.57 12.04 85.22 1.03 1.59 16 6 C -0.13 -3.20 6.89 22.72 0.16 -3.04 16 7 Cl -0.03 -0.70 29.24 -2.72 -0.08 -0.78 16 8 C -0.01 -0.39 4.67 40.76 0.19 -0.20 16 9 C 0.58 19.00 6.80 86.55 0.59 19.59 16 10 O -0.56 -24.62 16.52 -4.16 -0.07 -24.68 16 11 N -0.59 -15.93 2.98 -824.06 -2.45 -18.39 16 12 C 0.10 1.79 6.29 86.22 0.54 2.33 16 13 C -0.13 -2.09 6.06 30.53 0.19 -1.91 16 14 C -0.10 -2.11 5.17 30.62 0.16 -1.95 16 15 C -0.10 -3.02 2.38 -10.71 -0.03 -3.04 16 16 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 17 C 0.16 6.19 5.65 86.38 0.49 6.68 16 18 N -0.75 -39.34 5.38 -343.46 -1.85 -41.19 16 19 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 22 N -0.97 -62.79 13.06 21.65 0.28 -62.51 16 23 Si 0.98 47.37 29.55 68.60 2.03 49.39 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 27 C 0.13 4.16 5.53 86.36 0.48 4.64 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 1.06 8.14 -2.38 -0.02 1.05 16 31 H 0.10 1.41 7.66 -2.39 -0.02 1.39 16 32 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.23 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.08 1.41 6.38 -2.39 -0.02 1.40 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.37 21.50 6.90 -92.71 -0.64 20.86 16 43 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.05 2.41 6.20 -2.39 -0.01 2.40 16 Total: -1.00 -79.50 384.58 2.85 -76.65 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.36 Total: 26.43 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.43 Total: 7.53 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -5.82 Total: -134.54 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -79.50 2.85 -76.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714064372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.328 kcal (2) G-P(sol) polarization free energy of solvation -79.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds