Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.29020 * 126.43699 * 2 1 4 4 N 1.28744 * 108.80720 * 180.24450 * 3 2 1 5 5 N 1.28835 * 109.39646 * 359.74731 * 4 3 2 6 6 C 1.31080 * 107.99182 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.66116 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47110 * 90.02852 * 7 6 5 9 9 C 1.48554 * 110.99852 * 69.87140 * 8 7 6 10 10 C 1.54383 * 104.59576 * 200.96010 * 9 8 7 11 11 C 1.54259 * 105.05950 * 23.85952 * 10 9 8 12 12 H 1.09009 * 110.32168 * 241.00197 * 11 10 9 13 13 C 1.52997 * 110.32700 * 118.89546 * 11 10 9 14 14 N 1.46497 * 109.46983 * 66.45289 * 13 11 10 15 15 C 1.34780 * 119.99566 * 180.02562 * 14 13 11 16 16 O 1.21280 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99795 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47156 * 179.97438 * 17 15 14 19 19 C 1.76193 * 100.00049 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00026 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00056 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99640 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00053 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47361 * 89.99587 * 23 21 19 25 25 H 1.48497 * 109.47059 * 210.00081 * 23 21 19 26 26 H 1.48507 * 109.47001 * 329.99878 * 23 21 19 27 27 C 1.48564 * 110.99610 * 314.45688 * 8 7 6 28 28 H 1.09003 * 109.47121 * 270.18032 * 1 2 3 29 29 H 1.09008 * 109.47011 * 30.17941 * 1 2 3 30 30 H 1.08996 * 109.47274 * 150.17705 * 1 2 3 31 31 H 1.09005 * 109.47239 * 330.03028 * 7 6 5 32 32 H 1.08996 * 109.47195 * 210.02903 * 7 6 5 33 33 H 1.09003 * 110.41081 * 82.18228 * 9 8 7 34 34 H 1.09001 * 110.51574 * 319.79365 * 9 8 7 35 35 H 1.09002 * 110.32453 * 264.95749 * 10 9 8 36 36 H 1.09008 * 110.40963 * 142.79307 * 10 9 8 37 37 H 1.09001 * 109.46832 * 306.45106 * 13 11 10 38 38 H 1.09002 * 109.47153 * 186.45297 * 13 11 10 39 39 H 0.96995 * 120.00423 * 359.97438 * 14 13 11 40 40 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 41 41 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 42 42 H 0.97010 * 119.99946 * 180.02562 * 22 21 19 43 43 H 1.08991 * 110.41459 * 40.26239 * 27 8 7 44 44 H 1.09007 * 110.41091 * 277.81211 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0380 0.0000 4 7 3.4583 0.6481 -0.0052 5 7 3.4980 -0.6397 -0.0032 6 6 2.2644 -1.0828 0.0039 7 6 1.8263 -2.5247 0.0081 8 7 1.6907 -2.9912 1.3944 9 6 0.5272 -2.3510 2.0602 10 6 0.8183 -2.4893 3.5700 11 6 2.3508 -2.6342 3.6711 12 1 2.6115 -3.5913 4.1230 13 6 2.9407 -1.4833 4.4886 14 7 2.4889 -1.5895 5.8781 15 6 2.8853 -0.6768 6.7871 16 8 3.6164 0.2321 6.4550 17 6 2.4211 -0.7864 8.2166 18 16 3.1189 0.5753 9.1837 19 6 2.4339 0.2097 10.7653 20 1 1.7934 -0.6508 10.8906 21 6 2.7167 1.0283 11.8501 22 7 3.4969 2.0773 11.6972 23 14 1.9900 0.6412 13.5268 24 1 2.9149 -0.2486 14.2738 25 1 1.7961 1.9029 14.2855 26 1 0.6809 -0.0386 13.3539 27 6 2.8566 -2.5714 2.2138 28 1 -0.3633 0.0032 1.0277 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3633 -0.8915 -0.5111 31 1 2.5697 -3.1318 -0.5085 32 1 0.8667 -2.6143 -0.5009 33 1 -0.3938 -2.8733 1.8012 34 1 0.4584 -1.2995 1.7811 35 1 0.3269 -3.3759 3.9707 36 1 0.4863 -1.5991 4.1043 37 1 2.6089 -0.5331 4.0701 38 1 4.0290 -1.5346 4.4554 39 1 1.9039 -2.3162 6.1437 40 1 1.3327 -0.7358 8.2501 41 1 2.7537 -1.7364 8.6350 42 1 3.6948 2.6492 12.4554 43 1 3.1544 -1.5545 1.9584 44 1 3.6896 -3.2598 2.0706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714628915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = 99.520792 kcal Electronic energy + Delta-G solvation = -26976.918643 eV Core-core repulsion = 23093.944114 eV Total energy + Delta-G solvation = -3882.974529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.66530 -40.09494 -38.91912 -36.24891 -35.42670 -33.59435 -32.43339 -31.77306 -30.32443 -29.16407 -28.87743 -27.12785 -25.52889 -24.68801 -23.93146 -23.15529 -21.28928 -20.57761 -20.24280 -18.15415 -17.96539 -17.78017 -16.88241 -16.45131 -16.20001 -15.51579 -15.48760 -15.29407 -14.92839 -14.80860 -14.63773 -14.17394 -13.90769 -13.55473 -13.38726 -13.20537 -13.00458 -12.73273 -12.63400 -12.48016 -12.37019 -12.07309 -11.93670 -11.63935 -11.52586 -11.31464 -11.24753 -11.06752 -11.03037 -10.95900 -10.76597 -10.49136 -9.82299 -9.44530 -9.34589 -9.07634 -8.92311 -8.23665 -6.50575 -6.21861 -3.92653 0.75773 1.49855 1.83356 2.98453 3.08609 3.19959 3.21912 3.27542 3.31098 3.47529 3.62408 3.69450 3.94280 4.10950 4.19712 4.20018 4.27171 4.35661 4.50392 4.69380 4.73526 4.87239 4.93591 4.97673 5.01936 5.13159 5.14106 5.17189 5.27005 5.30270 5.41393 5.42759 5.53213 5.62182 5.64476 5.79897 5.87092 5.89198 6.10598 6.11994 6.16107 6.57423 7.58906 7.67966 8.21134 8.34691 8.59947 9.23195 10.85560 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.002079 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.934096 B =13466.621189 C =13944.468368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.305 5.305 3 N -0.090 5.090 4 N -0.070 5.070 5 N -0.290 5.290 6 C 0.145 3.855 7 C 0.124 3.876 8 N -0.487 5.487 9 C 0.015 3.985 10 C -0.124 4.124 11 C -0.104 4.104 12 H 0.092 0.908 13 C 0.131 3.869 14 N -0.738 5.738 15 C 0.530 3.470 16 O -0.516 6.516 17 C -0.152 4.152 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.032 3.968 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.061 0.939 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.705 -13.927 -26.571 32.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.108 5.108 3 N -0.076 5.076 4 N -0.063 5.063 5 N -0.141 5.141 6 C -0.135 4.135 7 C -0.008 4.008 8 N -0.209 5.209 9 C -0.112 4.112 10 C -0.162 4.162 11 C -0.123 4.123 12 H 0.111 0.889 13 C 0.006 3.994 14 N -0.393 5.393 15 C 0.316 3.684 16 O -0.389 6.389 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.096 4.096 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.465 -11.800 -27.094 31.031 hybrid contribution -2.343 -1.207 1.562 3.064 sum -11.808 -13.007 -25.532 30.992 Atomic orbital electron populations 1.22555 0.71753 1.06764 1.05922 1.48537 1.10680 1.04387 1.47154 1.78968 0.97977 1.12669 1.17997 1.78708 1.09526 1.03634 1.14464 1.75096 1.17567 1.03652 1.17749 1.27236 0.87294 0.95629 1.03321 1.21250 1.03697 0.82464 0.93411 1.65785 1.03748 1.51234 1.00162 1.23498 0.95078 0.97518 0.95153 1.22434 0.95473 1.03278 0.95006 1.22159 0.95266 0.99734 0.95155 0.88924 1.21265 0.99589 0.97231 0.81325 1.45968 1.53371 1.31034 1.08919 1.20345 0.79966 0.81177 0.86922 1.90721 1.35080 1.32692 1.80445 1.23524 1.04663 1.07327 0.94802 1.85446 1.64633 1.29915 1.03375 1.22861 1.35501 1.15530 0.94506 0.90938 1.25002 0.95004 0.94472 0.99161 1.70021 1.34291 1.14269 1.31659 0.86161 0.79272 0.77944 0.82070 1.20247 1.20747 1.19717 1.23332 0.93679 1.01324 0.91266 0.87915 0.87078 0.87546 0.85916 0.87913 0.89046 0.93862 0.90123 0.90456 0.92287 0.91291 0.76829 0.89299 0.89186 0.92162 0.92120 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 9.92 59.85 0.59 0.75 16 2 N -0.30 -2.32 3.49 -65.02 -0.23 -2.55 16 3 N -0.09 -1.06 13.29 60.35 0.80 -0.26 16 4 N -0.07 -0.97 13.43 60.35 0.81 -0.15 16 5 N -0.29 -3.46 11.12 32.70 0.36 -3.09 16 6 C 0.14 1.16 5.28 -155.43 -0.82 0.34 16 7 C 0.12 0.56 5.92 -4.98 -0.03 0.53 16 8 N -0.49 -2.79 5.65 -231.40 -1.31 -4.10 16 9 C 0.02 0.07 6.26 -2.18 -0.01 0.06 16 10 C -0.12 -0.79 6.33 -25.35 -0.16 -0.95 16 11 C -0.10 -0.83 3.13 -89.24 -0.28 -1.11 16 12 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 13 C 0.13 1.57 4.76 -4.04 -0.02 1.55 16 14 N -0.74 -9.73 5.32 -60.30 -0.32 -10.05 16 15 C 0.53 10.03 7.85 -10.98 -0.09 9.94 16 16 O -0.52 -12.14 15.86 5.56 0.09 -12.05 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 23 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.03 0.26 5.77 -2.18 -0.01 0.24 16 28 H 0.10 0.17 6.56 -51.93 -0.34 -0.17 16 29 H 0.11 0.14 8.14 -51.92 -0.42 -0.28 16 30 H 0.11 -0.09 7.14 -51.93 -0.37 -0.46 16 31 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.14 7.10 -51.93 -0.37 -0.23 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.04 0.21 3.61 -51.93 -0.19 0.02 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.58 7.63 -51.92 -0.40 0.19 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.40 3.96 8.32 -40.82 -0.34 3.62 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 43 H 0.06 0.64 4.96 -51.93 -0.26 0.38 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -39.13 372.06 -7.13 -46.26 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.03 Total: -2.01 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.41 Total: -4.53 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.86 Total: -45.83 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.13 -7.13 -46.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714628915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.780 kcal (2) G-P(sol) polarization free energy of solvation -39.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds