Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28434 * 125.18390 * 2 1 4 4 C 1.30839 * 110.98082 * 180.02562 * 3 2 1 5 5 C 1.39812 * 107.87525 * 359.77540 * 4 3 2 6 6 Cl 1.73599 * 127.33703 * 180.26718 * 5 4 3 7 7 C 1.36744 * 125.18666 * 180.02562 * 2 1 3 8 8 C 1.47029 * 126.90683 * 359.92724 * 7 2 1 9 9 O 1.21643 * 119.99889 * 260.24250 * 8 7 2 10 10 N 1.34775 * 119.99985 * 80.24208 * 8 7 2 11 11 C 1.46926 * 120.63332 * 354.47982 * 10 8 7 12 12 C 1.53194 * 108.77655 * 126.40818 * 11 10 8 13 13 C 1.53041 * 109.31071 * 54.63944 * 12 11 10 14 14 C 1.53042 * 109.53635 * 298.63250 * 13 12 11 15 15 C 1.46924 * 120.62917 * 174.49730 * 10 8 7 16 16 H 1.09002 * 109.58668 * 113.80095 * 15 10 8 17 17 C 1.52997 * 109.58647 * 353.37598 * 15 10 8 18 18 C 1.53009 * 109.47255 * 182.08232 * 17 15 10 19 19 N 1.46491 * 109.47261 * 185.08215 * 18 17 15 20 20 C 1.36937 * 120.00418 * 180.02562 * 19 18 17 21 21 H 1.08010 * 119.99636 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00839 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99624 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00524 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46933 * 60.00087 * 24 22 20 26 26 H 1.48496 * 109.47002 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.46700 * 300.00181 * 24 22 20 28 28 H 1.09000 * 109.46701 * 274.93936 * 1 2 3 29 29 H 1.09003 * 109.47484 * 34.94250 * 1 2 3 30 30 H 1.08997 * 109.47302 * 154.94051 * 1 2 3 31 31 H 1.07999 * 126.06490 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.58466 * 6.62535 * 11 10 8 33 33 H 1.08996 * 109.70133 * 246.26873 * 11 10 8 34 34 H 1.08997 * 109.50027 * 294.68548 * 12 11 10 35 35 H 1.09004 * 109.52170 * 174.60030 * 12 11 10 36 36 H 1.08999 * 109.46264 * 178.61269 * 13 12 11 37 37 H 1.09004 * 109.46281 * 58.64632 * 13 12 11 38 38 H 1.09000 * 109.49875 * 181.31776 * 14 13 12 39 39 H 1.09000 * 109.49870 * 301.41369 * 14 13 12 40 40 H 1.08999 * 109.47542 * 302.08237 * 17 15 10 41 41 H 1.09005 * 109.47020 * 62.08633 * 17 15 10 42 42 H 1.08998 * 109.47221 * 305.08523 * 18 17 15 43 43 H 1.09007 * 109.46509 * 65.08062 * 18 17 15 44 44 H 0.97004 * 120.00124 * 0.02562 * 19 18 17 45 45 H 0.97001 * 119.99799 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2050 1.0497 0.0000 4 6 3.4734 0.7287 -0.0005 5 6 3.5630 -0.6666 0.0043 6 17 5.0078 -1.6289 0.0122 7 6 2.2530 -1.1176 -0.0005 8 6 1.8009 -2.5166 0.0004 9 8 1.7849 -3.1500 1.0388 10 7 1.4043 -3.0974 -1.1494 11 6 1.3029 -2.3135 -2.3879 12 6 2.1198 -3.0102 -3.4807 13 6 1.6518 -4.4611 -3.6150 14 6 1.8842 -5.1982 -2.2942 15 6 1.0647 -4.5263 -1.1879 16 1 0.0016 -4.6437 -1.3982 17 6 1.3980 -5.1693 0.1598 18 6 1.0920 -6.6672 0.0999 19 7 1.2955 -7.2605 1.4237 20 6 1.0813 -8.5996 1.6143 21 1 0.7627 -9.2184 0.7883 22 6 1.2736 -9.1617 2.8687 23 7 1.6623 -8.4077 3.8752 24 14 0.9807 -10.9883 3.1287 25 1 1.8861 -11.7655 2.2447 26 1 1.2532 -11.3364 4.5463 27 1 -0.4306 -11.3146 2.8018 28 1 -0.3633 0.0885 1.0239 29 1 -0.3634 0.8424 -0.5886 30 1 -0.3634 -0.9309 -0.4353 31 1 4.3040 1.4190 -0.0003 32 1 1.6976 -1.3115 -2.2195 33 1 0.2597 -2.2482 -2.6971 34 1 3.1762 -2.9920 -3.2126 35 1 1.9761 -2.4923 -4.4290 36 1 2.2146 -4.9522 -4.4089 37 1 0.5895 -4.4789 -3.8587 38 1 1.5723 -6.2375 -2.3977 39 1 2.9428 -5.1595 -2.0373 40 1 2.4554 -5.0230 0.3806 41 1 0.7961 -4.7065 0.9419 42 1 0.0572 -6.8146 -0.2092 43 1 1.7575 -7.1455 -0.6189 44 1 1.5820 -6.7049 2.1654 45 1 1.7963 -8.8005 4.7519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715188199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = 42.514769 kcal Electronic energy + Delta-G solvation = -28309.029377 eV Core-core repulsion = 24389.246423 eV Total energy + Delta-G solvation = -3919.782953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.77906 -41.52861 -38.58018 -37.68132 -36.99694 -34.81155 -34.36342 -33.92356 -32.56037 -31.63438 -29.33399 -28.19342 -26.73982 -25.48670 -24.81838 -23.40006 -22.85804 -22.18554 -21.59448 -20.27276 -19.27648 -18.67539 -17.78665 -17.22771 -17.01121 -16.64512 -16.39977 -15.83003 -15.64295 -15.51447 -15.43756 -15.09456 -14.96947 -14.70913 -14.44429 -14.26874 -14.12149 -13.94634 -13.65051 -13.38805 -13.01573 -12.95257 -12.88517 -12.77370 -12.62175 -12.39442 -12.17819 -11.96514 -11.94991 -11.78245 -11.63831 -11.59558 -11.44505 -10.92244 -10.56348 -10.25882 -9.87423 -9.72846 -9.00740 -7.94165 -5.25004 0.28783 0.68716 1.14244 1.35999 1.45130 1.50270 1.54264 1.56512 1.96784 2.55908 3.08216 3.38274 3.45175 3.65863 3.76941 3.88124 3.92160 4.03362 4.09304 4.17995 4.21153 4.24800 4.32775 4.38630 4.44885 4.49827 4.51700 4.66550 4.67579 4.78370 4.87910 4.91811 5.04005 5.07173 5.14965 5.23344 5.34460 5.37046 5.47045 5.48053 5.48840 5.62138 6.14949 6.26788 6.75419 6.88255 7.31287 8.08738 8.32292 9.29843 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.003123 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.232030 B = 8962.465062 C = 9651.553865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.263 5.263 3 N -0.276 5.276 4 C 0.028 3.972 5 C -0.132 4.132 6 Cl -0.028 7.028 7 C -0.017 4.017 8 C 0.583 3.417 9 O -0.541 6.541 10 N -0.587 5.587 11 C 0.103 3.897 12 C -0.130 4.130 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.159 3.841 16 H 0.098 0.902 17 C -0.099 4.099 18 C 0.150 3.850 19 N -0.750 5.750 20 C -0.249 4.249 21 H 0.080 0.920 22 C -0.081 4.081 23 N -0.974 5.974 24 Si 0.981 3.019 25 H -0.275 1.275 26 H -0.296 1.296 27 H -0.274 1.274 28 H 0.094 0.906 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.223 0.777 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.369 0.631 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 22.477 -20.336 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.051 5.051 3 N -0.106 5.106 4 C -0.150 4.150 5 C -0.170 4.170 6 Cl 0.001 6.999 7 C -0.148 4.148 8 C 0.367 3.633 9 O -0.417 6.417 10 N -0.320 5.320 11 C -0.018 4.018 12 C -0.168 4.168 13 C -0.150 4.150 14 C -0.170 4.170 15 C 0.057 3.943 16 H 0.116 0.884 17 C -0.137 4.137 18 C 0.024 3.976 19 N -0.392 5.392 20 C -0.380 4.380 21 H 0.098 0.902 22 C -0.273 4.273 23 N -0.625 5.625 24 Si 0.808 3.192 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.199 1.199 28 H 0.112 0.888 29 H 0.151 0.849 30 H 0.120 0.880 31 H 0.239 0.761 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.042 0.958 44 H 0.200 0.800 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.476 22.800 -19.872 30.346 hybrid contribution 1.093 -1.644 1.230 2.326 sum -1.383 21.156 -18.642 28.232 Atomic orbital electron populations 1.22646 0.70232 1.07145 1.06310 1.45854 1.08685 1.00641 1.49950 1.73246 1.03521 1.13205 1.20673 1.23964 0.94534 0.92124 1.04342 1.21464 0.87075 0.93370 1.15085 1.98368 1.33544 1.70713 1.97296 1.21257 0.91605 0.89522 1.12380 1.17282 0.77511 0.84315 0.84144 1.91032 1.53537 1.63284 1.33802 1.48208 1.64599 1.10291 1.08856 1.22073 1.02677 0.94392 0.82703 1.21903 0.99383 0.96437 0.99089 1.21519 1.02910 0.94767 0.95789 1.22039 0.99505 1.00385 0.95045 1.21299 1.00086 0.77996 0.94927 0.88422 1.21963 1.01037 0.93713 0.96980 1.20949 0.97401 0.92453 0.86836 1.42646 1.82089 1.06633 1.07817 1.19681 1.37063 0.86252 0.95014 0.90183 1.25707 1.03001 1.02855 0.95712 1.69878 1.55005 1.36556 1.01046 0.85112 0.78321 0.79401 0.76326 1.20102 1.22184 1.19949 0.88752 0.84901 0.88037 0.76055 0.90229 0.87869 0.92826 0.87726 0.90350 0.89823 0.90008 0.93253 0.94264 0.91543 0.95714 0.95753 0.80016 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 11.22 127.77 1.43 2.29 16 2 N -0.26 -5.11 3.62 -355.92 -1.29 -6.40 16 3 N -0.28 -5.46 11.89 -57.06 -0.68 -6.14 16 4 C 0.03 0.53 12.04 85.22 1.03 1.56 16 5 C -0.13 -3.19 6.89 22.73 0.16 -3.03 16 6 Cl -0.03 -0.71 29.24 -2.72 -0.08 -0.79 16 7 C -0.02 -0.41 4.72 40.76 0.19 -0.22 16 8 C 0.58 17.08 6.63 86.55 0.57 17.65 16 9 O -0.54 -21.61 12.65 -4.17 -0.05 -21.66 16 10 N -0.59 -13.40 2.97 -799.32 -2.38 -15.78 16 11 C 0.10 1.42 6.35 86.36 0.55 1.97 16 12 C -0.13 -1.61 6.08 30.67 0.19 -1.43 16 13 C -0.11 -1.55 5.88 30.62 0.18 -1.37 16 14 C -0.13 -2.91 4.81 30.67 0.15 -2.77 16 15 C 0.16 4.12 3.03 44.97 0.14 4.25 16 16 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 17 C -0.10 -3.77 3.29 30.60 0.10 -3.67 16 18 C 0.15 6.50 5.72 86.38 0.49 6.99 16 19 N -0.75 -42.33 5.60 -343.45 -1.92 -44.25 16 20 C -0.25 -14.80 9.99 84.03 0.84 -13.96 16 21 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 22 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 23 N -0.97 -63.91 13.06 21.65 0.28 -63.63 16 24 Si 0.98 48.04 29.55 68.60 2.03 50.07 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 27 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.02 7.66 -2.39 -0.02 1.00 16 31 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.08 1.12 6.22 -2.38 -0.01 1.10 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.87 6.86 -2.39 -0.02 1.86 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 1.71 7.22 -2.39 -0.02 1.69 16 41 H 0.07 2.90 6.25 -2.38 -0.01 2.88 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.02 1.03 6.83 -2.38 -0.02 1.01 16 44 H 0.37 22.88 7.67 -92.71 -0.71 22.17 16 45 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -81.18 376.39 2.70 -78.48 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.30 Total: 26.29 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.48 Total: 3.80 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -5.98 Total: -136.19 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -81.18 2.70 -78.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715188199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.997 kcal (2) G-P(sol) polarization free energy of solvation -81.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds