Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28471 * 124.87978 * 2 1 4 4 C 1.31807 * 110.10397 * 179.97438 * 3 2 1 5 5 C 1.47711 * 126.50438 * 179.97438 * 4 3 2 6 6 O 1.21572 * 119.99592 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00496 * 0.02907 * 5 4 3 8 8 C 1.46503 * 120.00087 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47072 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47274 * 179.97438 * 9 8 7 11 11 C 1.53037 * 109.45915 * 295.02879 * 10 9 8 12 12 C 1.53186 * 109.31211 * 178.60118 * 11 10 9 13 13 N 1.46929 * 108.76846 * 54.65298 * 12 11 10 14 14 C 1.36934 * 120.62892 * 126.40481 * 13 12 11 15 15 H 1.08000 * 120.00403 * 331.83320 * 14 13 12 16 16 C 1.38813 * 119.99531 * 151.82533 * 14 13 12 17 17 N 1.31621 * 120.00437 * 343.07592 * 16 14 13 18 18 Si 1.86808 * 119.99636 * 163.07315 * 16 14 13 19 19 H 1.48500 * 109.46917 * 90.00472 * 18 16 14 20 20 H 1.48503 * 109.46720 * 210.00297 * 18 16 14 21 21 H 1.48490 * 109.47217 * 330.00291 * 18 16 14 22 22 C 1.46921 * 118.73443 * 306.38700 * 13 12 11 23 23 C 1.53036 * 109.45953 * 174.97325 * 10 9 8 24 24 C 1.41500 * 106.97892 * 0.02562 * 4 3 2 25 25 C 1.35064 * 124.88670 * 179.97438 * 2 1 3 26 26 Cl 1.73599 * 126.39684 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.47490 * 90.02027 * 1 2 3 28 28 H 1.08996 * 109.47117 * 210.02466 * 1 2 3 29 29 H 1.09006 * 109.47269 * 330.01905 * 1 2 3 30 30 H 0.97004 * 119.99864 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.46955 * 299.99892 * 8 7 5 32 32 H 1.08998 * 109.47205 * 59.99950 * 8 7 5 33 33 H 1.08998 * 109.47396 * 300.00222 * 9 8 7 34 34 H 1.09008 * 109.46933 * 60.00114 * 9 8 7 35 35 H 1.09001 * 109.45819 * 54.99911 * 10 9 8 36 36 H 1.09000 * 109.49962 * 298.56175 * 11 10 9 37 37 H 1.08998 * 109.50054 * 58.66071 * 11 10 9 38 38 H 1.09008 * 109.59675 * 294.86880 * 12 11 10 39 39 H 1.08999 * 109.70712 * 174.51092 * 12 11 10 40 40 H 0.97005 * 120.00076 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.59061 * 293.81234 * 22 13 12 42 42 H 1.09007 * 109.69952 * 173.46397 * 22 13 12 43 43 H 1.09001 * 109.49944 * 301.33861 * 23 10 9 44 44 H 1.09000 * 109.50024 * 61.43240 * 23 10 9 45 45 H 1.08005 * 127.25809 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4742 0.7178 0.0006 5 6 4.6266 1.6417 0.0002 6 8 5.7594 1.2004 0.0003 7 7 4.4224 2.9739 -0.0002 8 6 5.5655 3.8902 0.0001 9 6 5.0612 5.3347 -0.0011 10 6 6.2550 6.2917 -0.0002 11 6 7.0332 6.1348 1.3081 12 6 8.2471 7.0690 1.2907 13 7 7.7861 8.4383 1.0235 14 6 8.1266 9.4653 1.8628 15 1 8.3199 9.2680 2.9069 16 6 8.2235 10.7599 1.3715 17 7 8.3209 10.9665 0.0753 18 14 8.2154 12.2092 2.5502 19 1 9.6085 12.5245 2.9565 20 1 7.6163 13.3902 1.8784 21 1 7.4151 11.8648 3.7527 22 6 6.9532 8.6845 -0.1614 23 6 5.7539 7.7320 -0.1278 24 6 3.5286 -0.6962 0.0003 25 6 2.2375 -1.1079 0.0005 26 17 1.6805 -2.7521 0.0019 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5136 30 1 3.5185 3.3260 -0.0006 31 1 6.1700 3.7167 0.8904 32 1 6.1707 3.7163 -0.8896 33 1 4.4569 5.5078 -0.8915 34 1 4.4557 5.5088 0.8885 35 1 6.9080 6.0585 -0.8413 36 1 6.3881 6.3920 2.1483 37 1 7.3698 5.1031 1.4098 38 1 8.9377 6.7566 0.5072 39 1 8.7510 7.0350 2.2566 40 1 8.3882 11.8712 -0.2680 41 1 7.5381 8.5040 -1.0633 42 1 6.6008 9.7161 -0.1550 43 1 5.1797 7.8373 -1.0483 44 1 5.1209 7.9740 0.7259 45 1 4.4127 -1.3165 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715202424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = 48.085000 kcal Electronic energy + Delta-G solvation = -26301.825871 eV Core-core repulsion = 22382.284461 eV Total energy + Delta-G solvation = -3919.541410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.21559 -39.57671 -37.93884 -37.46807 -35.40638 -34.11590 -33.49424 -31.36578 -30.93572 -29.94406 -28.86398 -27.75013 -25.26324 -23.70698 -22.73543 -22.05766 -21.82988 -20.81753 -20.20133 -19.02852 -18.47694 -17.04670 -16.89899 -16.73951 -15.92261 -15.49676 -14.84813 -14.78391 -14.62252 -14.23835 -14.04899 -13.69122 -13.53209 -13.44441 -13.27589 -13.26855 -12.78520 -12.66752 -12.47228 -12.26111 -12.17818 -11.54212 -11.31731 -11.28869 -11.16902 -10.85840 -10.65330 -10.48446 -10.31760 -10.11873 -10.10421 -9.80997 -9.72217 -9.51880 -9.41247 -9.34037 -9.07957 -8.41464 -6.59453 -5.73612 -3.15392 0.93124 1.03891 1.46236 1.96440 3.02355 3.14455 3.40115 3.46920 3.49558 3.74034 4.39043 4.44832 4.54142 4.62647 4.74141 4.86734 4.99215 5.10646 5.14855 5.34928 5.43943 5.51348 5.66173 5.74604 5.79721 5.84105 5.91091 6.07266 6.09364 6.18121 6.27471 6.38062 6.44069 6.62085 6.70496 6.77396 6.89694 6.93058 7.08803 7.12808 7.43913 7.44682 7.72436 7.84513 8.02924 8.51187 9.27547 9.91553 10.48840 11.34812 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.001653 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.164486 B =16935.853738 C =17256.349143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.274 5.274 3 N -0.239 5.239 4 C -0.004 4.004 5 C 0.602 3.398 6 O -0.528 6.528 7 N -0.714 5.714 8 C 0.116 3.884 9 C -0.125 4.125 10 C -0.074 4.074 11 C -0.130 4.130 12 C 0.144 3.856 13 N -0.593 5.593 14 C -0.249 4.249 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.171 3.829 23 C -0.134 4.134 24 C -0.150 4.150 25 C 0.047 3.953 26 Cl 0.004 6.996 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.406 0.594 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.016 0.984 39 H 0.051 0.949 40 H 0.253 0.747 41 H 0.016 0.984 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.054 -25.693 -2.057 32.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.065 5.065 3 N -0.077 5.077 4 C -0.164 4.164 5 C 0.385 3.615 6 O -0.402 6.402 7 N -0.365 5.365 8 C -0.006 4.006 9 C -0.163 4.163 10 C -0.094 4.094 11 C -0.169 4.169 12 C 0.018 3.982 13 N -0.316 5.316 14 C -0.379 4.379 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.548 5.548 18 Si 0.730 3.270 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.045 3.955 23 C -0.173 4.173 24 C -0.179 4.179 25 C -0.103 4.103 26 Cl 0.032 6.968 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.240 0.760 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.081 -25.050 -2.134 31.561 hybrid contribution -0.202 0.047 0.498 0.540 sum -19.283 -25.003 -1.636 31.617 Atomic orbital electron populations 1.22330 0.72416 1.06114 1.05199 1.45482 1.08188 1.01590 1.51193 1.73692 1.03101 1.12001 1.18876 1.21893 0.90895 0.93766 1.09805 1.16754 0.86276 0.81607 0.76876 1.90831 1.22235 1.77104 1.50025 1.45933 1.11183 1.05263 1.74088 1.21625 0.87793 0.88248 1.02957 1.21913 0.99472 0.92664 1.02273 1.20970 0.94996 0.94854 0.98541 1.22122 0.99179 0.98766 0.96863 1.20903 0.92941 0.85967 0.98397 1.44049 1.56679 1.02585 1.28249 1.19180 1.41832 0.86696 0.90219 0.91828 1.25036 1.00719 0.98337 0.95696 1.70038 1.53513 1.20060 1.11235 0.86328 0.77752 0.82471 0.80425 1.21441 1.21615 1.20555 1.20755 0.88362 0.98079 0.88324 1.22219 1.00291 0.94929 0.99897 1.21493 0.95465 0.93894 1.07036 1.21915 0.91143 0.83793 1.13451 1.98412 1.89633 1.11408 1.97315 0.88985 0.88364 0.87628 0.75962 0.90632 0.91156 0.91688 0.91500 0.91626 0.92428 0.93007 0.96571 0.92997 0.93727 0.96563 0.89642 0.93461 0.92771 0.80786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 11.14 59.85 0.67 0.91 16 2 N -0.27 -2.09 3.70 -64.88 -0.24 -2.33 16 3 N -0.24 -2.36 11.67 33.42 0.39 -1.97 16 4 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 5 C 0.60 7.92 7.82 -12.39 -0.10 7.82 16 6 O -0.53 -8.58 16.93 5.30 0.09 -8.49 16 7 N -0.71 -8.23 5.55 -61.29 -0.34 -8.57 16 8 C 0.12 1.45 5.43 -4.04 -0.02 1.43 16 9 C -0.13 -1.57 4.80 -26.73 -0.13 -1.69 16 10 C -0.07 -1.19 2.15 -90.58 -0.19 -1.39 16 11 C -0.13 -2.25 5.14 -26.62 -0.14 -2.38 16 12 C 0.14 3.08 6.52 -3.71 -0.02 3.06 16 13 N -0.59 -15.04 2.99 -172.32 -0.52 -15.55 16 14 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 15 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 16 C 0.00 0.01 4.92 -17.43 -0.09 -0.08 16 17 N -0.90 -26.51 11.19 55.49 0.62 -25.89 16 18 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.17 4.08 5.30 -3.71 -0.02 4.06 16 23 C -0.13 -2.49 5.36 -26.61 -0.14 -2.64 16 24 C -0.15 -1.49 10.79 -39.31 -0.42 -1.91 16 25 C 0.05 0.38 7.44 -17.10 -0.13 0.25 16 26 Cl 0.00 0.03 28.67 -51.86 -1.49 -1.46 16 27 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.14 7.71 -51.93 -0.40 -0.26 16 29 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.41 3.93 8.20 -40.82 -0.33 3.60 16 31 H 0.08 1.02 6.54 -51.93 -0.34 0.68 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 38 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 2.29 6.07 -51.93 -0.31 1.98 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -33.15 381.90 -8.99 -42.14 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.76 Total: -0.20 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -1.47 Total: -0.28 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.08 Total: -54.31 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.49 Total: -1.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.15 -8.99 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715202424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.223 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds