Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28471 * 124.87978 * 2 1 4 4 C 1.31807 * 110.10397 * 179.97438 * 3 2 1 5 5 C 1.47711 * 126.50438 * 179.97438 * 4 3 2 6 6 O 1.21572 * 119.99592 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00496 * 0.02907 * 5 4 3 8 8 C 1.46503 * 120.00087 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47072 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47274 * 179.97438 * 9 8 7 11 11 C 1.53037 * 109.45915 * 295.02879 * 10 9 8 12 12 C 1.53186 * 109.31211 * 178.60118 * 11 10 9 13 13 N 1.46929 * 108.76846 * 54.65298 * 12 11 10 14 14 C 1.36934 * 120.62892 * 126.40481 * 13 12 11 15 15 H 1.08000 * 120.00403 * 331.83320 * 14 13 12 16 16 C 1.38813 * 119.99531 * 151.82533 * 14 13 12 17 17 N 1.31621 * 120.00437 * 343.07592 * 16 14 13 18 18 Si 1.86808 * 119.99636 * 163.07315 * 16 14 13 19 19 H 1.48500 * 109.46917 * 90.00472 * 18 16 14 20 20 H 1.48503 * 109.46720 * 210.00297 * 18 16 14 21 21 H 1.48490 * 109.47217 * 330.00291 * 18 16 14 22 22 C 1.46921 * 118.73443 * 306.38700 * 13 12 11 23 23 C 1.53036 * 109.45953 * 174.97325 * 10 9 8 24 24 C 1.41500 * 106.97892 * 0.02562 * 4 3 2 25 25 C 1.35064 * 124.88670 * 179.97438 * 2 1 3 26 26 Cl 1.73599 * 126.39684 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.47490 * 90.02027 * 1 2 3 28 28 H 1.08996 * 109.47117 * 210.02466 * 1 2 3 29 29 H 1.09006 * 109.47269 * 330.01905 * 1 2 3 30 30 H 0.97004 * 119.99864 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.46955 * 299.99892 * 8 7 5 32 32 H 1.08998 * 109.47205 * 59.99950 * 8 7 5 33 33 H 1.08998 * 109.47396 * 300.00222 * 9 8 7 34 34 H 1.09008 * 109.46933 * 60.00114 * 9 8 7 35 35 H 1.09001 * 109.45819 * 54.99911 * 10 9 8 36 36 H 1.09000 * 109.49962 * 298.56175 * 11 10 9 37 37 H 1.08998 * 109.50054 * 58.66071 * 11 10 9 38 38 H 1.09008 * 109.59675 * 294.86880 * 12 11 10 39 39 H 1.08999 * 109.70712 * 174.51092 * 12 11 10 40 40 H 0.97005 * 120.00076 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.59061 * 293.81234 * 22 13 12 42 42 H 1.09007 * 109.69952 * 173.46397 * 22 13 12 43 43 H 1.09001 * 109.49944 * 301.33861 * 23 10 9 44 44 H 1.09000 * 109.50024 * 61.43240 * 23 10 9 45 45 H 1.08005 * 127.25809 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4742 0.7178 0.0006 5 6 4.6266 1.6417 0.0002 6 8 5.7594 1.2004 0.0003 7 7 4.4224 2.9739 -0.0002 8 6 5.5655 3.8902 0.0001 9 6 5.0612 5.3347 -0.0011 10 6 6.2550 6.2917 -0.0002 11 6 7.0332 6.1348 1.3081 12 6 8.2471 7.0690 1.2907 13 7 7.7861 8.4383 1.0235 14 6 8.1266 9.4653 1.8628 15 1 8.3199 9.2680 2.9069 16 6 8.2235 10.7599 1.3715 17 7 8.3209 10.9665 0.0753 18 14 8.2154 12.2092 2.5502 19 1 9.6085 12.5245 2.9565 20 1 7.6163 13.3902 1.8784 21 1 7.4151 11.8648 3.7527 22 6 6.9532 8.6845 -0.1614 23 6 5.7539 7.7320 -0.1278 24 6 3.5286 -0.6962 0.0003 25 6 2.2375 -1.1079 0.0005 26 17 1.6805 -2.7521 0.0019 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5136 30 1 3.5185 3.3260 -0.0006 31 1 6.1700 3.7167 0.8904 32 1 6.1707 3.7163 -0.8896 33 1 4.4569 5.5078 -0.8915 34 1 4.4557 5.5088 0.8885 35 1 6.9080 6.0585 -0.8413 36 1 6.3881 6.3920 2.1483 37 1 7.3698 5.1031 1.4098 38 1 8.9377 6.7566 0.5072 39 1 8.7510 7.0350 2.2566 40 1 8.3882 11.8712 -0.2680 41 1 7.5381 8.5040 -1.0633 42 1 6.6008 9.7161 -0.1550 43 1 5.1797 7.8373 -1.0483 44 1 5.1209 7.9740 0.7259 45 1 4.4127 -1.3165 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715202424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 26.686107 kcal Electronic energy + Delta-G solvation = -26302.753797 eV Core-core repulsion = 22382.284461 eV Total energy + Delta-G solvation = -3920.469336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.87378 -40.59930 -39.46157 -38.00802 -36.72779 -35.12475 -34.61775 -33.04448 -31.78147 -31.51833 -30.18404 -28.52405 -26.83225 -24.98253 -24.01457 -23.33019 -22.70269 -22.13702 -21.21184 -20.56793 -19.20962 -18.68066 -17.65086 -17.63216 -16.97185 -16.80022 -16.49108 -15.71544 -15.57448 -15.31061 -15.26837 -15.16774 -14.87239 -14.79729 -14.33886 -14.02861 -13.81935 -13.81185 -13.54959 -13.16866 -13.00359 -12.92848 -12.84563 -12.79005 -12.52740 -12.27524 -12.13481 -11.98703 -11.92121 -11.78542 -11.57537 -11.34233 -10.97537 -10.96521 -10.51290 -10.42756 -10.16302 -10.04828 -8.64261 -7.85475 -5.30766 0.30309 0.35026 0.72987 1.45241 1.46655 1.47601 1.57879 2.14829 2.22406 2.52468 3.09205 3.28540 3.73880 3.79062 3.86145 3.95844 4.08894 4.16359 4.27284 4.29882 4.33245 4.42666 4.46478 4.60438 4.61684 4.68577 4.77934 4.80043 4.92464 5.03367 5.06232 5.06599 5.13338 5.30040 5.33634 5.38002 5.40465 5.43562 5.49466 5.58702 5.69285 5.83633 6.33262 6.41545 6.64253 7.09216 7.17522 7.89928 8.41507 9.20510 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.001653 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.164486 B =16935.853738 C =17256.349143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.264 5.264 3 N -0.241 5.241 4 C -0.029 4.029 5 C 0.601 3.399 6 O -0.567 6.567 7 N -0.703 5.703 8 C 0.122 3.878 9 C -0.108 4.108 10 C -0.069 4.069 11 C -0.118 4.118 12 C 0.137 3.863 13 N -0.611 5.611 14 C -0.263 4.263 15 H 0.064 0.936 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.271 1.271 22 C 0.174 3.826 23 C -0.121 4.121 24 C -0.168 4.168 25 C 0.051 3.949 26 Cl 0.026 6.974 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.416 0.584 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.009 0.991 39 H 0.048 0.952 40 H 0.249 0.751 41 H -0.008 1.008 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.695 -27.223 -1.510 34.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.056 5.056 3 N -0.079 5.079 4 C -0.187 4.187 5 C 0.386 3.614 6 O -0.445 6.445 7 N -0.354 5.354 8 C -0.001 4.001 9 C -0.146 4.146 10 C -0.089 4.089 11 C -0.157 4.157 12 C 0.012 3.988 13 N -0.335 5.335 14 C -0.393 4.393 15 H 0.081 0.919 16 C -0.248 4.248 17 N -0.582 5.582 18 Si 0.795 3.205 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.195 1.195 22 C 0.048 3.952 23 C -0.160 4.160 24 C -0.197 4.197 25 C -0.099 4.099 26 Cl 0.054 6.946 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.253 0.747 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.010 0.990 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -21.763 -26.595 -1.576 34.401 hybrid contribution 0.574 0.431 0.311 0.782 sum -21.190 -26.165 -1.266 33.693 Atomic orbital electron populations 1.22791 0.69750 1.07741 1.06927 1.45920 1.09572 1.00922 1.49173 1.73634 1.02609 1.12835 1.18870 1.21647 0.90990 0.93966 1.12091 1.17000 0.86319 0.82071 0.76048 1.90800 1.23870 1.77800 1.52019 1.45796 1.11487 1.04754 1.73357 1.21471 0.87985 0.88375 1.02288 1.21703 0.97840 0.91338 1.03737 1.20877 0.96265 0.94083 0.97642 1.21981 0.97328 0.98815 0.97560 1.21081 0.94811 0.85040 0.97858 1.44338 1.57385 1.03596 1.28201 1.19512 1.41283 0.87785 0.90710 0.91859 1.25811 1.00984 1.00806 0.97207 1.70197 1.54872 1.20198 1.12953 0.85287 0.77666 0.78991 0.78567 1.21216 1.21731 1.19546 1.20612 0.89823 0.97703 0.87015 1.22018 0.97846 0.95105 1.00998 1.21616 0.96549 0.93608 1.07934 1.21937 0.90777 0.84900 1.12327 1.98423 1.89305 1.09678 1.97165 0.87173 0.86481 0.86386 0.74691 0.91504 0.91800 0.89835 0.90454 0.92035 0.92536 0.90560 0.97271 0.93318 0.94151 0.98982 0.93089 0.91177 0.92921 0.80763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.14 127.77 1.42 1.63 16 2 N -0.26 -3.44 3.70 -359.17 -1.33 -4.77 16 3 N -0.24 -4.32 11.67 -48.18 -0.56 -4.88 16 4 C -0.03 -0.63 7.13 42.46 0.30 -0.33 16 5 C 0.60 15.51 7.82 86.75 0.68 16.19 16 6 O -0.57 -18.62 16.93 -3.94 -0.07 -18.68 16 7 N -0.70 -15.09 5.55 -466.10 -2.59 -17.68 16 8 C 0.12 2.82 5.43 86.38 0.47 3.29 16 9 C -0.11 -2.40 4.80 30.59 0.15 -2.25 16 10 C -0.07 -2.11 2.15 -10.77 -0.02 -2.13 16 11 C -0.12 -3.91 5.14 30.67 0.16 -3.75 16 12 C 0.14 5.89 6.52 86.36 0.56 6.46 16 13 N -0.61 -31.57 2.99 -699.10 -2.09 -33.66 16 14 C -0.26 -14.85 9.58 84.03 0.81 -14.05 16 15 H 0.06 3.50 7.89 -2.91 -0.02 3.48 16 16 C -0.05 -3.02 4.92 84.86 0.42 -2.61 16 17 N -0.94 -56.51 11.19 21.65 0.24 -56.27 16 18 Si 0.97 45.63 29.59 68.60 2.03 47.65 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 C 0.17 8.52 5.30 86.36 0.46 8.97 16 23 C -0.12 -4.36 5.36 30.67 0.16 -4.19 16 24 C -0.17 -3.23 10.79 22.44 0.24 -2.99 16 25 C 0.05 0.74 7.44 83.56 0.62 1.37 16 26 Cl 0.03 0.26 28.67 -2.72 -0.08 0.18 16 27 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.12 -0.05 7.71 -2.39 -0.02 -0.07 16 29 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.42 7.12 8.20 -92.70 -0.76 6.36 16 31 H 0.07 1.69 6.54 -2.38 -0.02 1.67 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.08 2.18 6.50 -2.39 -0.02 2.16 16 38 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 40 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 42 H 0.05 2.83 6.07 -2.38 -0.01 2.81 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -73.70 381.90 2.23 -71.47 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.25 Total: 11.03 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 6.43 Total: 5.60 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -6.33 Total: -117.26 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.07 Total: -18.68 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -0.08 Total: 0.18 kcal Total: -73.70 2.23 -71.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715202424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.157 kcal (2) G-P(sol) polarization free energy of solvation -73.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds