Wall clock time and date at job start Sat Apr 11 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46892 * 2 1 4 4 N 1.28437 * 125.18755 * 275.24134 * 3 2 1 5 5 C 1.30836 * 110.97813 * 180.29651 * 4 3 2 6 6 C 1.39806 * 107.88192 * 359.73695 * 5 4 3 7 7 Cl 1.73596 * 127.33947 * 180.02562 * 6 5 4 8 8 C 1.36752 * 125.19002 * 95.09020 * 3 2 1 9 9 C 1.47031 * 126.90057 * 359.97438 * 8 3 2 10 10 O 1.21643 * 120.00387 * 267.21434 * 9 8 3 11 11 N 1.34780 * 119.99844 * 87.21601 * 9 8 3 12 12 C 1.46502 * 119.99793 * 174.68725 * 11 9 8 13 13 H 1.09003 * 110.05750 * 326.41030 * 12 11 9 14 14 C 1.53873 * 110.03478 * 87.83023 * 12 11 9 15 15 C 1.54268 * 106.59925 * 119.28576 * 14 12 11 16 16 C 1.54889 * 104.19672 * 23.60616 * 15 14 12 17 17 C 1.54270 * 110.02991 * 204.99748 * 12 11 9 18 18 H 1.09009 * 110.48495 * 335.91131 * 17 12 11 19 19 C 1.52991 * 110.48861 * 98.42429 * 17 12 11 20 20 N 1.46499 * 109.47237 * 184.99868 * 19 17 12 21 21 C 1.36939 * 120.00113 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00225 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00368 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99423 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46778 * 179.97438 * 25 23 21 27 27 H 1.48492 * 109.47364 * 299.99896 * 25 23 21 28 28 H 1.48500 * 109.47240 * 60.00113 * 25 23 21 29 29 H 1.08999 * 109.46874 * 60.00245 * 1 2 3 30 30 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47211 * 300.00246 * 1 2 3 32 32 H 1.08999 * 109.47711 * 239.99838 * 2 1 3 33 33 H 1.09007 * 109.46586 * 119.99712 * 2 1 3 34 34 H 1.08006 * 126.05581 * 179.76229 * 5 4 3 35 35 H 0.96997 * 120.00320 * 354.67293 * 11 9 8 36 36 H 1.09003 * 110.03100 * 238.56734 * 14 12 11 37 37 H 1.08996 * 110.03432 * 359.95007 * 14 12 11 38 38 H 1.08997 * 110.48820 * 142.29070 * 15 14 12 39 39 H 1.09004 * 110.48442 * 264.93059 * 15 14 12 40 40 H 1.09001 * 110.75352 * 203.74556 * 16 15 14 41 41 H 1.08997 * 110.75565 * 80.37734 * 16 15 14 42 42 H 1.09002 * 109.47336 * 65.00241 * 19 17 12 43 43 H 1.09004 * 109.47419 * 304.99890 * 19 17 12 44 44 H 0.96992 * 120.00230 * 0.02562 * 20 19 17 45 45 H 0.97003 * 120.00799 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1746 2.1110 -1.0453 5 6 2.6309 3.2949 -0.7261 6 6 2.7795 3.3374 0.6634 7 17 3.3492 4.6684 1.6212 8 6 2.3745 2.0912 1.1132 9 6 2.3403 1.6237 2.5068 10 8 1.3558 1.8255 3.1921 11 7 3.4000 0.9717 3.0250 12 6 3.4141 0.6087 4.4442 13 1 2.8925 1.3662 5.0291 14 6 2.7470 -0.7635 4.6441 15 6 3.8192 -1.6902 5.2535 16 6 4.8187 -0.7204 5.9314 17 6 4.8685 0.4678 4.9391 18 1 5.5350 0.2441 4.1060 19 6 5.3169 1.7440 5.6540 20 7 6.7339 1.6329 6.0087 21 6 7.3594 2.6622 6.6602 22 1 6.8080 3.5558 6.9130 23 6 8.7023 2.5573 6.9958 24 7 9.3744 1.4686 6.6873 25 14 9.5552 3.9611 7.8852 26 1 10.9759 3.6030 8.1274 27 1 9.4887 5.1883 7.0518 28 1 8.8790 4.2077 9.1841 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8935 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8530 4.0973 -1.4141 35 1 4.1531 0.7426 2.4582 36 1 1.9015 -0.6718 5.3260 37 1 2.4119 -1.1589 3.6853 38 1 3.3729 -2.3559 5.9922 39 1 4.3159 -2.2648 4.4716 40 1 5.8006 -1.1837 6.0289 41 1 4.4448 -0.3971 6.9028 42 1 4.7254 1.8802 6.5594 43 1 5.1735 2.5997 4.9941 44 1 7.2294 0.8307 5.7813 45 1 8.9316 0.7397 6.2251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716063090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:53 Heat of formation + Delta-G solvation = 14.561308 kcal Electronic energy + Delta-G solvation = -27674.899728 eV Core-core repulsion = 23753.904621 eV Total energy + Delta-G solvation = -3920.995106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.78508 -41.15260 -39.26491 -37.74491 -36.68258 -35.62192 -34.94609 -33.32788 -32.08778 -30.87590 -30.06340 -28.79138 -26.18200 -25.33923 -24.60646 -23.83835 -22.80335 -21.89027 -21.24364 -20.77038 -19.54529 -19.11772 -17.96471 -17.41549 -17.10208 -16.83758 -16.49595 -16.05472 -15.72517 -15.70251 -15.31632 -15.21025 -15.07286 -14.98519 -14.72998 -14.47342 -13.95448 -13.64101 -13.17024 -13.00289 -12.95441 -12.88368 -12.84096 -12.67357 -12.57386 -12.38741 -12.06336 -11.91623 -11.83613 -11.77473 -11.66832 -11.51749 -11.45473 -11.25080 -10.94212 -10.46398 -10.31249 -9.93699 -9.12664 -8.41482 -5.35005 0.25443 0.62497 1.05468 1.32249 1.54453 1.57261 1.66549 1.83386 2.01260 2.68836 3.22632 3.35991 3.37942 3.39225 3.56325 3.79243 3.83425 3.86797 3.97248 4.07485 4.16414 4.22559 4.29452 4.36403 4.43411 4.48422 4.53365 4.62022 4.65194 4.71079 4.88498 4.89962 4.96878 5.05398 5.07636 5.09500 5.18154 5.23380 5.40971 5.41778 5.48853 5.56283 6.16749 6.49610 6.72929 6.80502 7.08236 7.98352 8.09364 9.10866 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.003236 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.223754 B = 8650.297718 C =10318.146671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.255 5.255 4 N -0.273 5.273 5 C 0.025 3.975 6 C -0.131 4.131 7 Cl -0.027 7.027 8 C -0.025 4.025 9 C 0.598 3.402 10 O -0.547 6.547 11 N -0.692 5.692 12 C 0.153 3.847 13 H 0.074 0.926 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.092 4.092 18 H 0.084 0.916 19 C 0.167 3.833 20 N -0.749 5.749 21 C -0.338 4.338 22 H 0.059 0.941 23 C -0.099 4.099 24 N -0.971 5.971 25 Si 1.125 2.875 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.045 0.955 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.222 0.778 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.014 0.986 43 H 0.007 0.993 44 H 0.364 0.636 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.427 -6.726 -16.320 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.045 5.045 4 N -0.104 5.104 5 C -0.152 4.152 6 C -0.169 4.169 7 Cl 0.001 6.999 8 C -0.156 4.156 9 C 0.381 3.619 10 O -0.423 6.423 11 N -0.343 5.343 12 C 0.049 3.951 13 H 0.093 0.907 14 C -0.160 4.160 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.111 4.111 18 H 0.103 0.897 19 C 0.040 3.960 20 N -0.394 5.394 21 C -0.469 4.469 22 H 0.077 0.923 23 C -0.290 4.290 24 N -0.619 5.619 25 Si 0.949 3.051 26 H -0.215 1.215 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.128 0.872 34 H 0.238 0.762 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.025 0.975 44 H 0.196 0.804 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.184 -6.574 -15.939 25.058 hybrid contribution -0.496 0.288 -0.009 0.574 sum -18.680 -6.286 -15.948 25.353 Atomic orbital electron populations 1.22156 0.92495 1.05215 1.02491 1.22526 0.96979 0.74572 1.07263 1.46110 1.44475 1.13048 1.00835 1.73230 1.19228 1.04453 1.13478 1.23971 1.02659 0.96242 0.92372 1.21522 1.11167 0.90581 0.93602 1.98385 1.87256 1.43398 1.70814 1.21175 1.10331 0.94279 0.89861 1.16905 0.83279 0.77357 0.84365 1.90850 1.33512 1.56584 1.61317 1.46093 1.20238 1.56587 1.11366 1.21659 0.95562 0.98076 0.79846 0.90745 1.22475 0.98372 0.92864 1.02250 1.22324 0.95364 0.96896 1.00201 1.22424 0.99948 0.94874 0.97750 1.22301 0.94903 0.95199 0.98708 0.89741 1.20707 0.84332 0.95426 0.95495 1.42443 1.07407 1.18774 1.70800 1.20348 0.96119 0.97504 1.32971 0.92276 1.27129 0.94565 1.04679 1.02665 1.70989 1.38570 1.07193 1.45170 0.82668 0.75001 0.71960 0.75442 1.21512 1.20616 1.20494 0.91613 0.86974 0.93616 0.84902 0.87166 0.76197 0.75083 0.90782 0.89891 0.89960 0.90128 0.92068 0.92173 0.96803 0.97547 0.80356 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 10.24 71.98 0.74 -1.09 16 2 C 0.10 1.20 6.91 86.38 0.60 1.80 16 3 N -0.26 -4.92 3.35 -334.58 -1.12 -6.04 16 4 N -0.27 -5.55 11.89 -57.06 -0.68 -6.23 16 5 C 0.02 0.49 12.04 85.22 1.03 1.52 16 6 C -0.13 -3.20 6.89 22.72 0.16 -3.04 16 7 Cl -0.03 -0.72 29.24 -2.72 -0.08 -0.80 16 8 C -0.03 -0.61 6.72 40.76 0.27 -0.34 16 9 C 0.60 15.69 6.90 86.55 0.60 16.29 16 10 O -0.55 -17.95 16.82 -4.17 -0.07 -18.02 16 11 N -0.69 -15.85 4.98 -442.72 -2.20 -18.05 16 12 C 0.15 3.85 2.78 45.72 0.13 3.98 16 13 H 0.07 2.26 7.34 -2.39 -0.02 2.24 16 14 C -0.12 -2.34 6.59 31.32 0.21 -2.14 16 15 C -0.11 -2.06 6.83 31.67 0.22 -1.84 16 16 C -0.11 -3.02 6.19 31.89 0.20 -2.82 16 17 C -0.09 -2.71 2.59 -9.72 -0.03 -2.73 16 18 H 0.08 2.42 7.74 -2.38 -0.02 2.41 16 19 C 0.17 6.83 5.54 86.38 0.48 7.31 16 20 N -0.75 -38.01 5.49 -343.46 -1.89 -39.90 16 21 C -0.34 -19.48 9.99 84.03 0.84 -18.64 16 22 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 23 C -0.10 -5.78 5.50 84.86 0.47 -5.32 16 24 N -0.97 -60.49 13.70 21.65 0.30 -60.19 16 25 Si 1.12 52.62 29.92 68.60 2.05 54.67 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.03 7.65 -2.38 -0.02 1.02 16 34 H 0.22 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.41 8.04 8.34 -92.71 -0.77 7.27 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.77 7.97 -2.39 -0.02 1.75 16 42 H 0.01 0.60 8.02 -2.39 -0.02 0.58 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.36 18.65 6.47 -92.71 -0.60 18.05 16 45 H 0.25 15.10 6.78 -92.71 -0.63 14.47 16 Total: -1.00 -75.22 389.78 1.99 -73.23 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.21 Total: 28.38 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.89 Total: -7.05 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -5.59 Total: -130.41 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.07 Total: -18.02 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 2.05 Total: 54.67 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -75.22 1.99 -73.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716063090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.794 kcal (2) G-P(sol) polarization free energy of solvation -75.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds