Wall clock time and date at job start Sat Apr 11 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46810 * 2 1 4 4 N 1.28429 * 125.18510 * 85.02191 * 3 2 1 5 5 C 1.30838 * 110.98396 * 179.97438 * 4 3 2 6 6 C 1.39815 * 107.86921 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 127.33481 * 179.97438 * 6 5 4 8 8 C 1.36742 * 125.18601 * 264.71397 * 3 2 1 9 9 C 1.47030 * 126.90391 * 0.02562 * 8 3 2 10 10 O 1.21647 * 120.00333 * 99.38666 * 9 8 3 11 11 N 1.34779 * 120.00002 * 279.38420 * 9 8 3 12 12 C 1.46501 * 119.99870 * 185.16419 * 11 9 8 13 13 H 1.09001 * 110.01652 * 34.93837 * 12 11 9 14 14 C 1.53873 * 110.03018 * 273.54300 * 12 11 9 15 15 C 1.54267 * 106.59926 * 240.71772 * 14 12 11 16 16 C 1.54890 * 104.19666 * 23.61108 * 15 14 12 17 17 C 1.54263 * 110.03153 * 156.37806 * 12 11 9 18 18 H 1.08998 * 110.49079 * 214.35227 * 17 12 11 19 19 C 1.52999 * 110.48886 * 336.99583 * 17 12 11 20 20 N 1.46500 * 109.47494 * 185.00225 * 19 17 12 21 21 C 1.36940 * 120.00400 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99361 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00047 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00340 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00025 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46997 * 60.00208 * 25 23 21 27 27 H 1.48491 * 109.47211 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47006 * 300.00304 * 25 23 21 29 29 H 1.08994 * 109.47332 * 60.00465 * 1 2 3 30 30 H 1.09003 * 109.46923 * 299.99647 * 1 2 3 31 31 H 1.09006 * 109.46627 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47107 * 119.99863 * 2 1 3 33 33 H 1.08992 * 109.47296 * 240.00022 * 2 1 3 34 34 H 1.07993 * 126.06816 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00176 * 5.15750 * 11 9 8 36 36 H 1.08998 * 110.03325 * 0.02562 * 14 12 11 37 37 H 1.08998 * 110.02994 * 121.43446 * 14 12 11 38 38 H 1.08994 * 110.48708 * 142.29300 * 15 14 12 39 39 H 1.09003 * 110.48642 * 264.93369 * 15 14 12 40 40 H 1.08991 * 110.75498 * 80.37298 * 16 15 14 41 41 H 1.09000 * 110.75551 * 203.74921 * 16 15 14 42 42 H 1.09001 * 109.47036 * 305.00031 * 19 17 12 43 43 H 1.08999 * 109.47231 * 64.99502 * 19 17 12 44 44 H 0.96999 * 119.99560 * 359.97438 * 20 19 17 45 45 H 0.96999 * 120.00369 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1791 2.1094 1.0457 5 6 2.6286 3.2958 0.7260 6 6 2.7735 3.3395 -0.6640 7 17 3.3341 4.6737 -1.6227 8 6 2.3780 2.0899 -1.1128 9 6 2.3483 1.6208 -2.5060 10 8 1.4195 1.9245 -3.2304 11 7 3.3503 0.8543 -2.9804 12 6 3.3793 0.4810 -4.3968 13 1 2.9872 1.2957 -5.0055 14 6 2.5474 -0.7936 -4.6230 15 6 3.5147 -1.8578 -5.1815 16 6 4.9107 -1.3941 -4.6965 17 6 4.8229 0.1469 -4.8257 18 1 4.9950 0.4537 -5.8574 19 6 5.8290 0.8208 -3.8905 20 7 7.1879 0.5884 -4.3859 21 6 8.2613 1.0999 -3.7065 22 1 8.1059 1.6749 -2.8056 23 6 9.5488 0.8793 -4.1757 24 7 9.7382 0.1790 -5.2739 25 14 11.0130 1.5776 -3.2493 26 1 11.0345 1.0271 -1.8703 27 1 12.2670 1.2041 -3.9515 28 1 10.9013 3.0573 -3.1900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.8494 4.0986 1.4137 35 1 4.0522 0.5499 -2.3842 36 1 2.1218 -1.1342 -3.6790 37 1 1.7522 -0.5977 -5.3421 38 1 3.2766 -2.8406 -4.7749 39 1 3.4754 -1.8748 -6.2707 40 1 5.0759 -1.6860 -3.6595 41 1 5.6951 -1.7917 -5.3406 42 1 5.6327 1.8924 -3.8571 43 1 5.7308 0.4021 -2.8889 44 1 7.3274 0.0717 -5.1949 45 1 10.6379 0.0251 -5.6020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716063091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:56 Heat of formation + Delta-G solvation = 41.917949 kcal Electronic energy + Delta-G solvation = -28050.630506 eV Core-core repulsion = 24130.821673 eV Total energy + Delta-G solvation = -3919.808833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.84133 -40.07351 -37.99021 -36.68102 -34.88135 -34.44600 -33.65325 -31.46961 -31.04961 -30.09455 -28.66077 -27.72255 -24.70461 -24.48540 -23.33090 -22.38628 -21.87518 -20.44964 -20.25210 -19.35436 -18.51908 -17.19635 -16.64565 -16.34098 -15.82611 -15.53341 -15.03616 -14.86217 -14.79982 -14.44196 -14.35388 -14.05481 -13.66843 -13.47467 -13.21548 -13.10647 -12.88593 -12.56151 -12.40549 -11.99793 -11.86257 -11.74274 -11.62779 -11.35296 -10.96950 -10.90338 -10.84092 -10.65049 -10.57758 -10.44584 -10.39183 -10.26459 -10.03864 -9.71287 -9.52390 -9.16310 -8.92218 -8.89649 -6.96009 -5.79212 -3.08123 1.25954 1.58943 2.17421 2.27782 2.57705 3.05226 3.42903 3.47631 3.48352 4.10306 4.31262 4.46509 4.53227 4.65154 4.67197 4.70624 4.73153 4.96339 4.97572 5.13336 5.18290 5.33824 5.37135 5.47130 5.55986 5.58320 5.64586 5.68396 5.76058 5.83207 5.94658 5.95722 5.99264 6.15469 6.19832 6.34361 6.42069 6.46769 6.47849 6.69408 6.74700 7.31109 7.66800 7.67431 7.93946 8.39502 9.51121 10.07457 10.42386 11.43446 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.003820 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.021928 B = 7327.771922 C = 8903.035112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.115 3.885 3 N -0.264 5.264 4 N -0.270 5.270 5 C 0.023 3.977 6 C -0.111 4.111 7 Cl -0.015 7.015 8 C -0.011 4.011 9 C 0.591 3.409 10 O -0.516 6.516 11 N -0.701 5.701 12 C 0.148 3.852 13 H 0.092 0.908 14 C -0.129 4.129 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.107 4.107 18 H 0.091 0.909 19 C 0.164 3.836 20 N -0.728 5.728 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.195 0.805 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.022 0.978 43 H 0.012 0.988 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 -1.756 8.629 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 N -0.053 5.053 4 N -0.100 5.100 5 C -0.155 4.155 6 C -0.149 4.149 7 Cl 0.014 6.986 8 C -0.141 4.141 9 C 0.373 3.627 10 O -0.390 6.390 11 N -0.354 5.354 12 C 0.043 3.957 13 H 0.110 0.890 14 C -0.168 4.168 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.126 4.126 18 H 0.109 0.891 19 C 0.036 3.964 20 N -0.373 5.373 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.212 0.788 35 H 0.245 0.755 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.030 0.970 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.350 -2.160 9.023 22.365 hybrid contribution 1.620 0.791 -0.180 1.812 sum -18.729 -1.369 8.844 20.757 Atomic orbital electron populations 1.22182 0.92964 1.03830 1.03917 1.22119 0.96544 0.76146 1.05648 1.45725 1.45508 1.12320 1.01766 1.73203 1.19255 1.04198 1.13387 1.23524 1.03635 0.95592 0.92747 1.21275 1.10291 0.90518 0.92774 1.98379 1.87423 1.42421 1.70398 1.21293 1.09341 0.93629 0.89851 1.16852 0.82961 0.78564 0.84350 1.90852 1.34034 1.56205 1.57894 1.46314 1.26556 1.50785 1.11775 1.21754 0.96381 0.97289 0.80254 0.89018 1.22558 0.98141 0.94811 1.01300 1.22397 0.95332 0.97887 1.00694 1.22520 0.96327 0.94478 1.01728 1.22497 0.92335 0.96287 1.01495 0.89075 1.20572 0.85386 0.96535 0.93906 1.42307 0.99447 1.64600 1.30905 1.19161 0.85503 1.26808 1.05761 0.91311 1.24714 0.97377 1.00809 0.97818 1.69640 1.20973 1.44346 1.23182 0.86291 0.82347 0.78754 0.78940 1.21268 1.21662 1.21203 0.91331 0.91109 0.89743 0.87281 0.88181 0.78804 0.75475 0.91744 0.91168 0.91843 0.91475 0.91512 0.90638 0.96026 0.97018 0.78174 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.11 0.90 6.91 -4.04 -0.03 0.87 16 3 N -0.26 -2.99 3.35 -57.11 -0.19 -3.18 16 4 N -0.27 -3.22 11.89 30.61 0.36 -2.86 16 5 C 0.02 0.27 12.04 -17.39 -0.21 0.06 16 6 C -0.11 -1.47 6.89 -38.88 -0.27 -1.74 16 7 Cl -0.01 -0.20 29.24 -51.86 -1.52 -1.72 16 8 C -0.01 -0.15 6.72 -82.00 -0.55 -0.70 16 9 C 0.59 8.25 6.89 -12.70 -0.09 8.16 16 10 O -0.52 -8.55 16.84 5.24 0.09 -8.46 16 11 N -0.70 -8.98 4.37 -53.92 -0.24 -9.21 16 12 C 0.15 1.91 3.06 -66.81 -0.20 1.71 16 13 H 0.09 1.29 7.68 -51.93 -0.40 0.89 16 14 C -0.13 -1.41 6.59 -25.61 -0.17 -1.58 16 15 C -0.13 -1.35 6.83 -25.07 -0.17 -1.52 16 16 C -0.11 -1.53 6.19 -24.73 -0.15 -1.69 16 17 C -0.11 -1.59 2.85 -88.96 -0.25 -1.84 16 18 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 19 C 0.16 3.09 4.72 -4.04 -0.02 3.07 16 20 N -0.73 -17.72 5.49 -59.91 -0.33 -18.05 16 21 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.31 5.50 -17.44 -0.10 -0.41 16 24 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 25 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.70 7.65 -51.93 -0.40 0.31 16 34 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.41 5.10 6.48 -40.82 -0.26 4.83 16 36 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.92 7.96 -51.93 -0.41 0.51 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.22 6.40 -51.93 -0.33 -0.11 16 44 H 0.38 9.81 7.64 -40.82 -0.31 9.50 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -32.59 387.87 -8.98 -41.56 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.73 Total: 9.03 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.98 Total: -3.19 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.33 Total: -60.29 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.59 -8.98 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716063091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.483 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds