Wall clock time and date at job start Sat Apr 11 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46810 * 2 1 4 4 N 1.28429 * 125.18510 * 85.02191 * 3 2 1 5 5 C 1.30838 * 110.98396 * 179.97438 * 4 3 2 6 6 C 1.39815 * 107.86921 * 359.97438 * 5 4 3 7 7 Cl 1.73603 * 127.33481 * 179.97438 * 6 5 4 8 8 C 1.36742 * 125.18601 * 264.71397 * 3 2 1 9 9 C 1.47030 * 126.90391 * 0.02562 * 8 3 2 10 10 O 1.21647 * 120.00333 * 99.38666 * 9 8 3 11 11 N 1.34779 * 120.00002 * 279.38420 * 9 8 3 12 12 C 1.46501 * 119.99870 * 185.16419 * 11 9 8 13 13 H 1.09001 * 110.01652 * 34.93837 * 12 11 9 14 14 C 1.53873 * 110.03018 * 273.54300 * 12 11 9 15 15 C 1.54267 * 106.59926 * 240.71772 * 14 12 11 16 16 C 1.54890 * 104.19666 * 23.61108 * 15 14 12 17 17 C 1.54263 * 110.03153 * 156.37806 * 12 11 9 18 18 H 1.08998 * 110.49079 * 214.35227 * 17 12 11 19 19 C 1.52999 * 110.48886 * 336.99583 * 17 12 11 20 20 N 1.46500 * 109.47494 * 185.00225 * 19 17 12 21 21 C 1.36940 * 120.00400 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99361 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00047 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00340 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00025 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46997 * 60.00208 * 25 23 21 27 27 H 1.48491 * 109.47211 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47006 * 300.00304 * 25 23 21 29 29 H 1.08994 * 109.47332 * 60.00465 * 1 2 3 30 30 H 1.09003 * 109.46923 * 299.99647 * 1 2 3 31 31 H 1.09006 * 109.46627 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47107 * 119.99863 * 2 1 3 33 33 H 1.08992 * 109.47296 * 240.00022 * 2 1 3 34 34 H 1.07993 * 126.06816 * 180.02562 * 5 4 3 35 35 H 0.96994 * 120.00176 * 5.15750 * 11 9 8 36 36 H 1.08998 * 110.03325 * 0.02562 * 14 12 11 37 37 H 1.08998 * 110.02994 * 121.43446 * 14 12 11 38 38 H 1.08994 * 110.48708 * 142.29300 * 15 14 12 39 39 H 1.09003 * 110.48642 * 264.93369 * 15 14 12 40 40 H 1.08991 * 110.75498 * 80.37298 * 16 15 14 41 41 H 1.09000 * 110.75551 * 203.74921 * 16 15 14 42 42 H 1.09001 * 109.47036 * 305.00031 * 19 17 12 43 43 H 1.08999 * 109.47231 * 64.99502 * 19 17 12 44 44 H 0.96999 * 119.99560 * 359.97438 * 20 19 17 45 45 H 0.96999 * 120.00369 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1791 2.1094 1.0457 5 6 2.6286 3.2958 0.7260 6 6 2.7735 3.3395 -0.6640 7 17 3.3341 4.6737 -1.6227 8 6 2.3780 2.0899 -1.1128 9 6 2.3483 1.6208 -2.5060 10 8 1.4195 1.9245 -3.2304 11 7 3.3503 0.8543 -2.9804 12 6 3.3793 0.4810 -4.3968 13 1 2.9872 1.2957 -5.0055 14 6 2.5474 -0.7936 -4.6230 15 6 3.5147 -1.8578 -5.1815 16 6 4.9107 -1.3941 -4.6965 17 6 4.8229 0.1469 -4.8257 18 1 4.9950 0.4537 -5.8574 19 6 5.8290 0.8208 -3.8905 20 7 7.1879 0.5884 -4.3859 21 6 8.2613 1.0999 -3.7065 22 1 8.1059 1.6749 -2.8056 23 6 9.5488 0.8793 -4.1757 24 7 9.7382 0.1790 -5.2739 25 14 11.0130 1.5776 -3.2493 26 1 11.0345 1.0271 -1.8703 27 1 12.2670 1.2041 -3.9515 28 1 10.9013 3.0573 -3.1900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.8494 4.0986 1.4137 35 1 4.0522 0.5499 -2.3842 36 1 2.1218 -1.1342 -3.6790 37 1 1.7522 -0.5977 -5.3421 38 1 3.2766 -2.8406 -4.7749 39 1 3.4754 -1.8748 -6.2707 40 1 5.0759 -1.6860 -3.6595 41 1 5.6951 -1.7917 -5.3406 42 1 5.6327 1.8924 -3.8571 43 1 5.7308 0.4021 -2.8889 44 1 7.3274 0.0717 -5.1949 45 1 10.6379 0.0251 -5.6020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716063091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:56 Heat of formation + Delta-G solvation = 21.422053 kcal Electronic energy + Delta-G solvation = -28051.519275 eV Core-core repulsion = 24130.821673 eV Total energy + Delta-G solvation = -3920.697602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.75029 -41.20039 -39.17325 -37.70184 -36.27170 -35.60598 -34.75118 -33.32664 -32.02833 -30.85067 -30.21047 -28.76217 -26.36645 -25.31571 -24.35252 -24.05456 -22.78417 -21.43902 -21.23933 -20.61662 -19.55953 -19.04868 -17.70872 -17.30588 -16.85402 -16.65524 -16.45462 -16.14214 -15.81374 -15.63983 -15.28636 -15.17322 -15.07912 -14.81928 -14.58263 -14.39809 -13.92107 -13.60307 -13.15850 -13.13463 -12.90878 -12.83474 -12.81278 -12.70068 -12.37349 -12.33514 -12.23202 -11.97564 -11.84590 -11.67060 -11.63345 -11.56878 -11.47367 -11.37892 -10.90899 -10.43629 -10.24948 -9.89425 -8.99556 -7.94874 -5.23193 0.28500 0.67022 1.11593 1.36021 1.47412 1.49623 1.55660 1.60090 2.06398 2.55674 3.25961 3.38798 3.40719 3.50049 3.65506 3.85017 3.87230 3.88931 4.10124 4.17476 4.19363 4.25752 4.38941 4.47186 4.52511 4.55189 4.64696 4.66110 4.73191 4.76917 4.82302 5.02556 5.08185 5.09286 5.11543 5.19666 5.26159 5.35389 5.43227 5.48229 5.51682 5.52665 6.21455 6.27676 6.76150 6.84883 7.34642 8.09520 8.33378 9.28181 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.003820 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.021928 B = 7327.771922 C = 8903.035112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.103 3.897 3 N -0.257 5.257 4 N -0.275 5.275 5 C 0.023 3.977 6 C -0.129 4.129 7 Cl -0.026 7.026 8 C -0.027 4.027 9 C 0.598 3.402 10 O -0.545 6.545 11 N -0.694 5.694 12 C 0.153 3.847 13 H 0.081 0.919 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.100 4.100 18 H 0.082 0.918 19 C 0.167 3.833 20 N -0.739 5.739 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.069 4.069 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.277 1.277 27 H -0.294 1.294 28 H -0.281 1.281 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.221 0.779 35 H 0.410 0.590 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.009 0.991 43 H 0.024 0.976 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.502 -2.714 10.056 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.046 5.046 4 N -0.105 5.105 5 C -0.154 4.154 6 C -0.167 4.167 7 Cl 0.003 6.997 8 C -0.158 4.158 9 C 0.381 3.619 10 O -0.421 6.421 11 N -0.346 5.346 12 C 0.048 3.952 13 H 0.099 0.901 14 C -0.160 4.160 15 C -0.151 4.151 16 C -0.148 4.148 17 C -0.119 4.119 18 H 0.100 0.900 19 C 0.040 3.960 20 N -0.382 5.382 21 C -0.378 4.378 22 H 0.090 0.910 23 C -0.262 4.262 24 N -0.617 5.617 25 Si 0.796 3.204 26 H -0.203 1.203 27 H -0.221 1.221 28 H -0.207 1.207 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.238 0.762 35 H 0.248 0.752 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.042 0.958 44 H 0.208 0.792 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.412 -3.124 10.484 24.045 hybrid contribution 1.884 1.095 -0.589 2.258 sum -19.527 -2.029 9.896 21.986 Atomic orbital electron populations 1.22145 0.92202 1.05233 1.02581 1.22528 0.97171 0.74653 1.07170 1.46095 1.44480 1.13115 1.00917 1.73213 1.19356 1.04448 1.13506 1.23968 1.02879 0.96136 0.92404 1.21502 1.11211 0.90414 0.93568 1.98369 1.87601 1.42956 1.70782 1.21249 1.10342 0.94174 0.89999 1.16872 0.82527 0.77993 0.84496 1.90835 1.35173 1.57325 1.58746 1.46247 1.26293 1.50411 1.11683 1.21691 0.95159 0.98198 0.80103 0.90130 1.22502 0.97883 0.93352 1.02215 1.22333 0.92932 0.98655 1.01152 1.22459 0.97775 0.93120 1.01443 1.22369 0.92387 0.97148 1.00010 0.89970 1.20669 0.83940 0.96144 0.95250 1.42484 1.00953 1.64253 1.30535 1.19530 0.86581 1.25963 1.05680 0.91048 1.25471 0.99956 1.01843 0.98913 1.69786 1.21056 1.46051 1.24777 0.85307 0.78950 0.78112 0.77982 1.20287 1.22052 1.20744 0.93407 0.91578 0.86974 0.85143 0.87300 0.76226 0.75196 0.90520 0.90329 0.89812 0.90846 0.91568 0.92474 0.97353 0.95837 0.79187 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 10.24 71.98 0.74 -1.21 16 2 C 0.10 1.38 6.91 86.38 0.60 1.98 16 3 N -0.26 -5.42 3.35 -334.58 -1.12 -6.54 16 4 N -0.27 -6.09 11.89 -57.06 -0.68 -6.77 16 5 C 0.02 0.50 12.04 85.22 1.03 1.53 16 6 C -0.13 -3.34 6.89 22.72 0.16 -3.19 16 7 Cl -0.03 -0.69 29.24 -2.72 -0.08 -0.77 16 8 C -0.03 -0.69 6.72 40.76 0.27 -0.41 16 9 C 0.60 16.29 6.89 86.55 0.60 16.89 16 10 O -0.54 -17.85 16.84 -4.18 -0.07 -17.92 16 11 N -0.69 -17.09 4.37 -442.74 -1.94 -19.03 16 12 C 0.15 3.81 3.06 45.71 0.14 3.95 16 13 H 0.08 2.23 7.68 -2.39 -0.02 2.21 16 14 C -0.12 -2.35 6.59 31.32 0.21 -2.14 16 15 C -0.11 -2.15 6.83 31.67 0.22 -1.93 16 16 C -0.11 -2.87 6.19 31.89 0.20 -2.67 16 17 C -0.10 -2.93 2.85 -9.72 -0.03 -2.96 16 18 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 19 C 0.17 6.28 4.72 86.38 0.41 6.69 16 20 N -0.74 -36.34 5.49 -343.46 -1.89 -38.23 16 21 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 22 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 24 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 25 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.13 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.11 1.26 7.65 -2.39 -0.02 1.25 16 34 H 0.22 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.41 9.77 6.48 -92.71 -0.60 9.17 16 36 H 0.08 1.34 7.92 -2.39 -0.02 1.32 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.02 0.85 6.40 -2.39 -0.02 0.84 16 44 H 0.38 19.57 7.64 -92.71 -0.71 18.87 16 45 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -70.01 387.87 2.08 -67.92 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.29 Total: 31.04 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 5.83 Total: 0.37 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -5.34 Total: -128.44 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.07 Total: -17.92 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -70.01 2.08 -67.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716063091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.346 kcal (2) G-P(sol) polarization free energy of solvation -70.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds