Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34598 * 126.49133 * 2 1 4 4 Cl 1.73601 * 125.43675 * 0.04734 * 3 2 1 5 5 N 1.31021 * 109.13064 * 180.25396 * 3 2 1 6 6 C 1.33304 * 109.70151 * 359.76024 * 5 3 2 7 7 C 1.36673 * 107.83286 * 359.97438 * 6 5 3 8 8 C 1.46660 * 126.84480 * 179.97438 * 7 6 5 9 9 O 1.21692 * 120.00063 * 184.84382 * 8 7 6 10 10 N 1.34780 * 120.00027 * 4.83867 * 8 7 6 11 11 C 1.46494 * 120.00055 * 174.48302 * 10 8 7 12 12 H 1.09005 * 109.47318 * 325.00532 * 11 10 8 13 13 C 1.53005 * 109.46959 * 85.00446 * 11 10 8 14 14 C 1.52996 * 109.47020 * 60.00078 * 13 11 10 15 15 C 1.52994 * 109.47502 * 60.00142 * 14 13 11 16 16 C 1.53005 * 109.46867 * 299.99952 * 15 14 13 17 17 C 1.52994 * 109.47193 * 205.00078 * 11 10 8 18 18 H 1.09002 * 109.47407 * 180.02562 * 17 11 10 19 19 C 1.53005 * 109.46867 * 60.00312 * 17 11 10 20 20 N 1.46502 * 109.46886 * 174.99934 * 19 17 11 21 21 C 1.36936 * 119.99798 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00513 * 359.97438 * 21 20 19 23 23 C 1.38819 * 120.00246 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99619 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00081 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47406 * 89.99713 * 25 23 21 27 27 H 1.48503 * 109.46643 * 209.99707 * 25 23 21 28 28 H 1.48498 * 109.47064 * 329.99450 * 25 23 21 29 29 H 1.08999 * 109.47879 * 269.95350 * 1 2 3 30 30 H 1.09002 * 109.46872 * 29.95871 * 1 2 3 31 31 H 1.09007 * 109.47359 * 149.94914 * 1 2 3 32 32 H 1.08007 * 126.08606 * 180.02562 * 6 5 3 33 33 H 0.96998 * 119.99528 * 354.48644 * 10 8 7 34 34 H 1.09000 * 109.47256 * 299.99748 * 13 11 10 35 35 H 1.09002 * 109.46975 * 179.97438 * 13 11 10 36 36 H 1.08999 * 109.47071 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.46961 * 299.99659 * 14 13 11 38 38 H 1.09002 * 109.47407 * 59.99790 * 15 14 13 39 39 H 1.09005 * 109.47360 * 180.02562 * 15 14 13 40 40 H 1.09002 * 109.46969 * 299.99545 * 16 15 14 41 41 H 1.09000 * 109.47256 * 180.02562 * 16 15 14 42 42 H 1.08999 * 109.47172 * 294.99794 * 19 17 11 43 43 H 1.08998 * 109.47397 * 55.00104 * 19 17 11 44 44 H 0.97001 * 120.00858 * 359.97438 * 20 19 17 45 45 H 0.96997 * 119.99592 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2654 1.0821 0.0000 4 17 1.7269 2.7325 0.0012 5 7 3.5160 0.6912 -0.0055 6 6 3.5704 -0.6408 -0.0039 7 6 2.2876 -1.1121 0.0035 8 6 1.8669 -2.5171 0.0071 9 8 0.6859 -2.7988 -0.0753 10 7 2.7882 -3.4962 0.1015 11 6 2.3631 -4.8925 0.2269 12 1 1.4489 -4.9422 0.8185 13 6 2.1024 -5.4731 -1.1645 14 6 3.3856 -5.4034 -1.9948 15 6 4.4854 -6.2112 -1.3029 16 6 4.7460 -5.6305 0.0885 17 6 3.4628 -5.7003 0.9188 18 1 3.1467 -6.7393 1.0117 19 6 3.7235 -5.1196 2.3101 20 7 4.6897 -5.9631 3.0181 21 6 5.0786 -5.6389 4.2904 22 1 4.6734 -4.7611 4.7718 23 6 5.9945 -6.4378 4.9612 24 7 6.4887 -7.5073 4.3743 25 14 6.5255 -5.9950 6.6965 26 1 5.6167 -6.6464 7.6737 27 1 7.9157 -6.4651 6.9237 28 1 6.4664 -4.5216 6.8714 29 1 -0.3635 -0.0008 1.0276 30 1 -0.3633 0.8904 -0.5132 31 1 -0.3634 -0.8896 -0.5146 32 1 4.4685 -1.2407 -0.0071 33 1 3.7328 -3.2763 0.0864 34 1 1.3189 -4.8977 -1.6574 35 1 1.7865 -6.5122 -1.0712 36 1 3.1998 -5.8166 -2.9861 37 1 3.7019 -4.3644 -2.0881 38 1 4.1691 -7.2501 -1.2096 39 1 5.3997 -6.1611 -1.8942 40 1 5.0624 -4.5916 -0.0048 41 1 5.5298 -6.2057 0.5813 42 1 4.1243 -4.1106 2.2135 43 1 2.7896 -5.0874 2.8712 44 1 5.0534 -6.7517 2.5860 45 1 7.1284 -8.0657 4.8432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716515601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -0.649988 kcal Electronic energy + Delta-G solvation = -27880.858600 eV Core-core repulsion = 23959.203882 eV Total energy + Delta-G solvation = -3921.654718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.45073 -41.26245 -39.20330 -38.15197 -36.44252 -35.52265 -34.65259 -33.68970 -31.80609 -31.20731 -30.01604 -28.24088 -26.93376 -24.77967 -24.65687 -23.33095 -22.65322 -22.02862 -21.43074 -20.02082 -19.46019 -19.00695 -17.71985 -17.43466 -16.94816 -16.72349 -16.26946 -15.90886 -15.83657 -15.62490 -15.28173 -15.05587 -14.92561 -14.74440 -14.56789 -14.24832 -14.02527 -13.81134 -13.41074 -13.11204 -12.97705 -12.93206 -12.84261 -12.71823 -12.70398 -12.56034 -12.10731 -11.89335 -11.82355 -11.65863 -11.37994 -11.18844 -11.09680 -11.02424 -10.97076 -10.82786 -10.13716 -9.69997 -8.95985 -7.93671 -5.21095 -0.00868 0.01715 1.43380 1.48293 1.48641 1.48847 1.57377 2.13508 2.23518 2.56863 3.38132 3.40141 3.61918 3.64486 3.75952 3.82150 3.87231 4.12472 4.17108 4.21399 4.27095 4.45143 4.51263 4.51691 4.53380 4.61920 4.67714 4.76312 4.81900 4.94962 5.05211 5.12286 5.18591 5.20911 5.30574 5.35372 5.36189 5.47234 5.50271 5.50823 5.56436 5.62467 6.29058 6.35316 6.49098 7.03929 7.36401 8.12591 8.36385 9.29540 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.003153 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.771063 B = 8876.940494 C =10749.198061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.414 5.414 3 C 0.254 3.746 4 Cl 0.061 6.939 5 N -0.494 5.494 6 C 0.052 3.948 7 C -0.080 4.080 8 C 0.600 3.400 9 O -0.568 6.568 10 N -0.691 5.691 11 C 0.168 3.832 12 H 0.075 0.925 13 C -0.122 4.122 14 C -0.110 4.110 15 C -0.114 4.114 16 C -0.107 4.107 17 C -0.088 4.088 18 H 0.081 0.919 19 C 0.160 3.840 20 N -0.739 5.739 21 C -0.244 4.244 22 H 0.070 0.930 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.272 1.272 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.210 0.790 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.025 0.975 43 H 0.005 0.995 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 14.542 -16.431 24.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.097 5.097 3 C -0.032 4.032 4 Cl 0.089 6.911 5 N -0.216 5.216 6 C -0.103 4.103 7 C -0.198 4.198 8 C 0.386 3.614 9 O -0.449 6.449 10 N -0.343 5.343 11 C 0.063 3.937 12 H 0.093 0.907 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.144 4.144 17 C -0.107 4.107 18 H 0.100 0.900 19 C 0.033 3.967 20 N -0.383 5.383 21 C -0.376 4.376 22 H 0.088 0.912 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.797 3.203 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.197 1.197 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.227 0.773 33 H 0.249 0.751 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.023 0.977 44 H 0.209 0.791 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.090 15.122 -16.322 25.323 hybrid contribution 0.198 -0.452 1.237 1.332 sum -11.892 14.669 -15.086 24.170 Atomic orbital electron populations 1.22605 0.73128 1.06855 1.05729 1.45203 1.09452 1.04051 1.51014 1.23477 0.86619 0.85454 1.07690 1.98436 1.88416 1.07286 1.96952 1.70076 1.17030 1.13357 1.21129 1.23123 0.96391 0.89906 1.00847 1.20811 0.91453 0.88574 1.18920 1.16641 0.85449 0.83071 0.76208 1.90770 1.17754 1.84181 1.52169 1.45675 1.09868 1.05968 1.72749 1.20871 0.96823 0.78875 0.97104 0.90712 1.21854 0.98436 1.01554 0.94171 1.21460 0.94073 1.00564 0.98637 1.21533 0.99167 0.99614 0.94850 1.21474 0.96074 1.01390 0.95504 1.21469 0.95832 0.99838 0.93589 0.90044 1.20775 0.91077 0.93625 0.91191 1.42515 1.50888 1.30401 1.14454 1.19566 1.18770 1.07099 0.92137 0.91235 1.25466 1.00740 0.97915 1.02212 1.69793 1.35254 1.17852 1.38745 0.85229 0.76857 0.77794 0.80428 1.21643 1.22038 1.19703 0.88813 0.86787 0.87778 0.77327 0.75130 0.91822 0.90167 0.90756 0.91788 0.91958 0.91014 0.91531 0.93232 0.95728 0.97693 0.79065 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 10.55 127.77 1.35 2.22 16 2 N -0.41 -8.75 3.18 -528.38 -1.68 -10.43 16 3 C 0.25 5.57 8.48 180.25 1.53 7.10 16 4 Cl 0.06 1.00 28.73 -2.72 -0.08 0.92 16 5 N -0.49 -12.34 11.21 -190.25 -2.13 -14.47 16 6 C 0.05 1.15 11.37 84.10 0.96 2.11 16 7 C -0.08 -1.86 6.91 39.95 0.28 -1.59 16 8 C 0.60 14.78 7.74 86.44 0.67 15.45 16 9 O -0.57 -16.41 14.52 -4.32 -0.06 -16.48 16 10 N -0.69 -15.32 3.60 -446.52 -1.61 -16.93 16 11 C 0.17 4.02 2.19 44.99 0.10 4.12 16 12 H 0.07 2.05 7.66 -2.38 -0.02 2.03 16 13 C -0.12 -2.43 5.60 30.59 0.17 -2.26 16 14 C -0.11 -1.92 5.76 30.59 0.18 -1.74 16 15 C -0.11 -2.29 5.92 30.59 0.18 -2.11 16 16 C -0.11 -2.76 4.90 30.59 0.15 -2.61 16 17 C -0.09 -2.49 2.02 -10.80 -0.02 -2.51 16 18 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 19 C 0.16 6.04 5.42 86.38 0.47 6.50 16 20 N -0.74 -36.18 5.33 -343.44 -1.83 -38.01 16 21 C -0.24 -13.47 9.99 84.04 0.84 -12.63 16 22 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 24 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 25 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.11 1.11 7.78 -2.39 -0.02 1.09 16 31 H 0.10 1.84 6.42 -2.38 -0.02 1.82 16 32 H 0.21 3.42 7.46 -2.91 -0.02 3.40 16 33 H 0.41 8.02 5.61 -92.71 -0.52 7.50 16 34 H 0.06 1.35 8.07 -2.39 -0.02 1.33 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.08 7.60 -2.39 -0.02 1.07 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.07 1.55 6.51 -2.39 -0.02 1.53 16 41 H 0.05 1.62 7.18 -2.39 -0.02 1.60 16 42 H 0.02 0.91 7.61 -2.39 -0.02 0.90 16 43 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.38 19.41 6.85 -92.71 -0.64 18.78 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.82 374.77 2.10 -66.72 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.13 Total: 29.94 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 7.31 Total: 8.51 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -6.97 Total: -137.63 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.06 Total: -16.48 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 17 Polarization: 1.00 SS G_CDS: -0.08 Total: 0.92 kcal Total: -68.82 2.10 -66.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716515601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.071 kcal (2) G-P(sol) polarization free energy of solvation -68.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds