Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46496 * 109.47404 * 2 1 4 4 N 1.28441 * 125.18827 * 274.99535 * 3 2 1 5 5 C 1.30835 * 110.98368 * 180.02562 * 4 3 2 6 6 C 1.39816 * 107.87594 * 359.77048 * 5 4 3 7 7 Cl 1.73597 * 127.33789 * 180.26796 * 6 5 4 8 8 C 1.36748 * 125.19146 * 95.02662 * 3 2 1 9 9 C 1.47029 * 126.89875 * 359.93755 * 8 3 2 10 10 O 1.21643 * 119.99743 * 260.61959 * 9 8 3 11 11 N 1.34777 * 120.00516 * 80.63060 * 9 8 3 12 12 C 1.47018 * 125.64533 * 5.28207 * 11 9 8 13 13 C 1.54327 * 107.27097 * 181.03182 * 12 11 9 14 14 C 1.55150 * 102.94331 * 22.19574 * 13 12 11 15 15 H 1.08999 * 111.03862 * 82.58502 * 14 13 12 16 16 C 1.52997 * 111.00582 * 206.42387 * 14 13 12 17 17 H 1.09008 * 109.46970 * 56.57644 * 16 14 13 18 18 C 1.52997 * 109.47202 * 176.57375 * 16 14 13 19 19 N 1.46499 * 109.47235 * 296.57325 * 16 14 13 20 20 C 1.36939 * 119.99980 * 154.99606 * 19 16 14 21 21 H 1.08002 * 119.99886 * 0.02562 * 20 19 16 22 22 C 1.38808 * 119.99848 * 179.97438 * 20 19 16 23 23 N 1.31620 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99914 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46967 * 90.00243 * 24 22 20 26 26 H 1.48500 * 109.47289 * 210.00292 * 24 22 20 27 27 H 1.48496 * 109.47296 * 330.00233 * 24 22 20 28 28 C 1.47420 * 125.65068 * 185.25509 * 11 9 8 29 29 H 1.09002 * 109.47367 * 64.98297 * 1 2 3 30 30 H 1.09001 * 109.47152 * 184.98171 * 1 2 3 31 31 H 1.08997 * 109.47182 * 304.98611 * 1 2 3 32 32 H 1.09001 * 109.47321 * 239.99894 * 2 1 3 33 33 H 1.09005 * 109.47400 * 120.00041 * 2 1 3 34 34 H 1.08003 * 126.06366 * 179.97438 * 5 4 3 35 35 H 1.09007 * 109.88639 * 300.44996 * 12 11 9 36 36 H 1.09004 * 109.88571 * 61.46195 * 12 11 9 37 37 H 1.09000 * 110.71718 * 263.82993 * 13 12 11 38 38 H 1.08999 * 110.71778 * 140.56236 * 13 12 11 39 39 H 1.08996 * 109.47170 * 174.94953 * 18 16 14 40 40 H 1.08998 * 109.47204 * 54.94587 * 18 16 14 41 41 H 1.09003 * 109.47229 * 294.94742 * 18 16 14 42 42 H 0.96996 * 119.99521 * 335.00602 * 19 16 14 43 43 H 0.97004 * 119.99515 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.37026 * 37.05638 * 28 11 9 45 45 H 1.08997 * 110.45831 * 274.78279 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1789 2.1094 -1.0457 5 6 2.6286 3.2957 -0.7259 6 6 2.7683 3.3413 0.6645 7 17 3.3215 4.6782 1.6238 8 6 2.3734 2.0915 1.1132 9 6 2.3370 1.6248 2.5070 10 8 1.4050 1.9303 3.2265 11 7 3.3363 0.8587 2.9876 12 6 4.5690 0.5077 2.2674 13 6 5.3998 -0.4016 3.1972 14 6 4.3331 -0.9728 4.1684 15 1 3.8187 -1.8261 3.7266 16 6 4.9606 -1.3499 5.5119 17 1 5.4604 -0.4792 5.9367 18 6 3.8670 -1.8277 6.4693 19 7 5.9367 -2.4236 5.3108 20 6 6.9674 -2.5868 6.1975 21 1 7.0604 -1.9243 7.0454 22 6 7.8920 -3.6045 6.0072 23 7 7.7784 -4.4122 4.9742 24 14 9.2976 -3.8277 7.2172 25 1 8.8758 -4.7511 8.3010 26 1 10.4730 -4.3974 6.5109 27 1 9.6613 -2.5119 7.8016 28 6 3.3747 0.2345 4.3225 29 1 -0.3634 0.4346 -0.9312 30 1 -0.3633 -1.0238 0.0892 31 1 -0.3633 0.5892 0.8419 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.8493 4.0987 -1.4137 35 1 4.3230 -0.0265 1.3496 36 1 5.1304 1.4116 2.0308 37 1 6.1443 0.1800 3.7408 38 1 5.8736 -1.2029 2.6303 39 1 4.3228 -2.1805 7.3944 40 1 3.3085 -2.6410 6.0061 41 1 3.1906 -1.0017 6.6896 42 1 5.8530 -3.0187 4.5495 43 1 8.4243 -5.1236 4.8415 44 1 2.3800 -0.1053 4.6112 45 1 3.7640 0.9361 5.0602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716961262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = 31.447385 kcal Electronic energy + Delta-G solvation = -27825.024151 eV Core-core repulsion = 23904.761280 eV Total energy + Delta-G solvation = -3920.262871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77021 -41.13757 -39.12070 -37.71269 -36.84186 -35.61318 -34.29819 -32.55670 -31.47538 -30.86189 -30.82041 -28.87735 -26.44966 -25.49075 -24.91047 -23.24006 -22.85271 -22.53049 -21.09724 -20.38470 -19.27351 -18.93520 -17.81106 -17.39990 -17.07465 -16.67161 -16.52607 -16.13553 -15.61826 -15.32968 -15.23546 -14.97904 -14.74679 -14.57094 -14.10301 -13.99736 -13.92816 -13.88820 -13.46541 -13.21377 -13.17002 -12.93540 -12.91011 -12.80579 -12.77186 -12.39513 -12.30821 -12.17422 -11.99451 -11.72985 -11.64058 -11.55327 -11.53065 -11.35528 -10.90194 -10.43169 -9.91428 -9.90183 -8.95054 -7.89586 -5.15736 0.26499 0.62525 1.06878 1.36699 1.50088 1.50724 1.52815 1.58472 1.88967 2.59421 3.03237 3.38627 3.44308 3.53893 3.58697 3.81452 3.85328 3.85888 4.08205 4.14340 4.16216 4.23773 4.26754 4.33145 4.46878 4.59955 4.61157 4.65791 4.70773 4.71236 4.83811 4.93895 5.01226 5.06451 5.08487 5.11289 5.17948 5.28927 5.39748 5.50370 5.57659 5.63258 6.15025 6.33342 6.68542 6.77527 7.40717 8.16631 8.40046 9.33555 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.002686 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.389790 B =10420.538815 C =10767.628565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.258 5.258 4 N -0.275 5.275 5 C 0.027 3.973 6 C -0.127 4.127 7 Cl -0.022 7.022 8 C -0.019 4.019 9 C 0.608 3.392 10 O -0.551 6.551 11 N -0.598 5.598 12 C 0.106 3.894 13 C -0.109 4.109 14 C -0.090 4.090 15 H 0.086 0.914 16 C 0.182 3.818 17 H 0.046 0.954 18 C -0.160 4.160 19 N -0.729 5.729 20 C -0.230 4.230 21 H 0.072 0.928 22 C -0.071 4.071 23 N -0.966 5.966 24 Si 0.962 3.038 25 H -0.292 1.292 26 H -0.298 1.298 27 H -0.272 1.272 28 C 0.120 3.880 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.044 0.956 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.224 0.776 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.374 0.626 43 H 0.249 0.751 44 H 0.084 0.916 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 13.372 -13.031 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.047 5.047 4 N -0.105 5.105 5 C -0.150 4.150 6 C -0.165 4.165 7 Cl 0.007 6.993 8 C -0.149 4.149 9 C 0.393 3.607 10 O -0.428 6.428 11 N -0.330 5.330 12 C -0.016 4.016 13 C -0.147 4.147 14 C -0.110 4.110 15 H 0.104 0.896 16 C 0.073 3.927 17 H 0.064 0.936 18 C -0.220 4.220 19 N -0.370 5.370 20 C -0.362 4.362 21 H 0.090 0.910 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.792 3.208 25 H -0.220 1.220 26 H -0.225 1.225 27 H -0.197 1.197 28 C -0.002 4.002 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.241 0.759 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.206 0.794 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.621 12.903 -13.354 23.030 hybrid contribution 1.229 0.037 1.333 1.813 sum -12.393 12.940 -12.021 21.576 Atomic orbital electron populations 1.22141 0.92307 1.04959 1.02802 1.22457 0.97103 0.74904 1.06882 1.46032 1.44684 1.12951 1.00994 1.73246 1.19301 1.04631 1.13362 1.24000 1.02610 0.96011 0.92366 1.21444 1.11522 0.90077 0.93470 1.98358 1.87816 1.42444 1.70722 1.21049 1.10317 0.94134 0.89438 1.16541 0.81471 0.77881 0.84768 1.90849 1.35752 1.56777 1.59382 1.48485 1.18947 1.48132 1.17467 1.22197 0.84157 0.99565 0.95680 1.22474 0.96953 0.98516 0.96762 1.22468 0.95471 0.96669 0.96345 0.89593 1.20299 0.89189 0.90676 0.92506 0.93585 1.22368 0.98961 1.00908 0.99782 1.42485 1.28923 1.35377 1.30174 1.19537 1.02387 1.10341 1.03960 0.90974 1.25376 1.02020 0.98963 1.00031 1.69784 1.38996 1.21391 1.31564 0.85308 0.79336 0.77753 0.78392 1.21977 1.22516 1.19662 1.22323 1.00741 0.93879 0.83297 0.91006 0.87414 0.93647 0.85011 0.88029 0.75945 0.90349 0.90486 0.90980 0.90033 0.94638 0.93509 0.91450 0.79350 0.94250 0.89774 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 10.24 71.98 0.74 -1.42 16 2 C 0.10 1.50 6.91 86.38 0.60 2.10 16 3 N -0.26 -5.17 3.35 -334.61 -1.12 -6.29 16 4 N -0.27 -5.51 11.89 -57.06 -0.68 -6.19 16 5 C 0.03 0.50 12.04 85.22 1.03 1.53 16 6 C -0.13 -2.83 6.89 22.72 0.16 -2.68 16 7 Cl -0.02 -0.48 29.24 -2.72 -0.08 -0.56 16 8 C -0.02 -0.44 5.90 40.76 0.24 -0.20 16 9 C 0.61 16.45 6.94 86.55 0.60 17.06 16 10 O -0.55 -18.52 17.41 -4.17 -0.07 -18.59 16 11 N -0.60 -14.48 3.33 -816.11 -2.71 -17.19 16 12 C 0.11 2.28 6.47 86.73 0.56 2.84 16 13 C -0.11 -2.82 6.18 31.78 0.20 -2.63 16 14 C -0.09 -2.42 2.63 -9.40 -0.02 -2.45 16 15 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 16 C 0.18 6.26 2.40 44.99 0.11 6.37 16 17 H 0.05 1.64 8.07 -2.38 -0.02 1.62 16 18 C -0.16 -5.13 9.24 71.98 0.66 -4.46 16 19 N -0.73 -33.06 4.87 -322.94 -1.57 -34.64 16 20 C -0.23 -11.95 9.93 84.03 0.83 -11.12 16 21 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 22 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 23 N -0.97 -56.24 13.06 21.65 0.28 -55.95 16 24 Si 0.96 44.65 29.55 68.60 2.03 46.68 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 28 C 0.12 2.96 5.52 86.86 0.48 3.44 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 1.45 7.66 -2.38 -0.02 1.43 16 34 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 2.04 8.04 -2.39 -0.02 2.02 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.76 7.61 -2.39 -0.02 1.74 16 42 H 0.37 18.22 7.80 -92.71 -0.72 17.50 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 44 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 45 H 0.08 1.91 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -66.31 391.70 2.99 -63.33 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.27 Total: 24.46 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.64 Total: 4.94 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -5.80 Total: -120.26 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.07 Total: -18.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -0.08 Total: -0.56 kcal Total: -66.31 2.99 -63.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716961262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.772 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds