Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47071 * 2 1 4 4 N 1.28436 * 125.19373 * 275.27655 * 3 2 1 5 5 C 1.30832 * 110.98200 * 180.31742 * 4 3 2 6 6 C 1.39802 * 107.87777 * 359.71817 * 5 4 3 7 7 Cl 1.73605 * 127.33738 * 179.97438 * 6 5 4 8 8 C 1.36751 * 125.18323 * 95.11286 * 3 2 1 9 9 C 1.47031 * 126.90660 * 359.96031 * 8 3 2 10 10 O 1.21643 * 119.99685 * 267.29233 * 9 8 3 11 11 N 1.34774 * 120.00190 * 87.28586 * 9 8 3 12 12 C 1.47025 * 125.64839 * 354.76977 * 11 9 8 13 13 C 1.54368 * 107.28880 * 178.87003 * 12 11 9 14 14 C 1.55162 * 102.92151 * 337.86207 * 13 12 11 15 15 H 1.09002 * 110.99948 * 277.36543 * 14 13 12 16 16 C 1.52999 * 111.00769 * 153.54683 * 14 13 12 17 17 H 1.09005 * 109.46779 * 63.17963 * 16 14 13 18 18 C 1.52998 * 109.46991 * 303.17759 * 16 14 13 19 19 N 1.46500 * 109.47144 * 183.17941 * 16 14 13 20 20 C 1.36936 * 119.99611 * 205.27541 * 19 16 14 21 21 H 1.07995 * 120.00080 * 359.72382 * 20 19 16 22 22 C 1.38816 * 119.99809 * 179.72053 * 20 19 16 23 23 N 1.31617 * 120.00111 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99879 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47289 * 89.99796 * 24 22 20 26 26 H 1.48498 * 109.47078 * 209.99330 * 24 22 20 27 27 H 1.48497 * 109.47326 * 329.99549 * 24 22 20 28 28 C 1.47421 * 125.64686 * 174.72206 * 11 9 8 29 29 H 1.09002 * 109.47622 * 55.02952 * 1 2 3 30 30 H 1.09001 * 109.47645 * 175.03313 * 1 2 3 31 31 H 1.09007 * 109.47131 * 295.03381 * 1 2 3 32 32 H 1.09005 * 109.46784 * 240.00524 * 2 1 3 33 33 H 1.08999 * 109.47228 * 120.00769 * 2 1 3 34 34 H 1.08002 * 126.06003 * 179.73514 * 5 4 3 35 35 H 1.09000 * 109.87985 * 298.31617 * 12 11 9 36 36 H 1.09000 * 109.88281 * 59.32794 * 12 11 9 37 37 H 1.08997 * 110.75704 * 219.49580 * 13 12 11 38 38 H 1.09000 * 110.70596 * 96.20351 * 13 12 11 39 39 H 1.08992 * 109.47476 * 300.00404 * 18 16 14 40 40 H 1.09005 * 109.46742 * 60.00020 * 18 16 14 41 41 H 1.08998 * 109.47312 * 179.97438 * 18 16 14 42 42 H 0.96994 * 119.99792 * 25.00034 * 19 16 14 43 43 H 0.96997 * 119.99803 * 179.97438 * 23 22 20 44 44 H 1.09000 * 110.36733 * 85.33030 * 28 11 9 45 45 H 1.08994 * 110.46447 * 323.05168 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1740 2.1113 -1.0451 5 6 2.6309 3.2949 -0.7259 6 6 2.7801 3.3370 0.6635 7 17 3.3521 4.6672 1.6212 8 6 2.3748 2.0909 1.1132 9 6 2.3409 1.6233 2.5068 10 8 1.3559 1.8240 3.1918 11 7 3.4010 0.9722 3.0252 12 6 4.6048 0.5684 2.2840 13 6 5.5540 -0.1179 3.2894 14 6 5.0747 0.4402 4.6556 15 1 5.5104 1.4198 4.8519 16 6 5.3941 -0.5361 5.7895 17 1 6.4744 -0.6547 5.8732 18 6 4.7536 -1.8929 5.4897 19 7 4.8611 -0.0123 7.0495 20 6 5.4246 -0.3877 8.2398 21 1 6.2589 -1.0733 8.2499 22 6 4.9234 0.1132 9.4335 23 7 5.4645 -0.2480 10.5776 24 14 3.4798 1.2987 9.4161 25 1 2.2096 0.5331 9.4917 26 1 3.5765 2.2135 10.5818 27 1 3.5058 2.0918 8.1609 28 6 3.5459 0.5478 4.4295 29 1 -0.3634 0.5890 -0.8421 30 1 -0.3634 -1.0238 -0.0890 31 1 -0.3634 0.4349 0.9312 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.8532 4.0973 -1.4138 35 1 4.3355 -0.1302 1.4918 36 1 5.0881 1.4464 1.8553 37 1 6.5891 0.1655 3.0989 38 1 5.4365 -1.2010 3.2527 39 1 3.6734 -1.7743 5.4059 40 1 5.1502 -2.2826 4.5521 41 1 4.9815 -2.5886 6.2973 42 1 4.1118 0.6035 7.0404 43 1 5.1145 0.1023 11.4117 44 1 3.0705 -0.4208 4.5841 45 1 3.1150 1.2922 5.0990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716961264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = 38.149542 kcal Electronic energy + Delta-G solvation = -28110.281843 eV Core-core repulsion = 24190.309599 eV Total energy + Delta-G solvation = -3919.972244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.78678 -41.23225 -39.29862 -37.73733 -36.93265 -35.61842 -34.42599 -32.76366 -31.78718 -30.87331 -30.56438 -29.21365 -26.37636 -25.53904 -25.00843 -23.50211 -22.99423 -22.55910 -20.67072 -20.38115 -19.69095 -18.89011 -17.76941 -17.68223 -17.02755 -16.68844 -16.61315 -16.17564 -15.75855 -15.52163 -15.25364 -14.98754 -14.82591 -14.74140 -14.39032 -14.12852 -13.95119 -13.92703 -13.67342 -13.34571 -13.17385 -12.94905 -12.88188 -12.83349 -12.71477 -12.40040 -12.32874 -12.19238 -11.96180 -11.77687 -11.65980 -11.61109 -11.52095 -11.40342 -10.96562 -10.43820 -9.92611 -9.88556 -9.31213 -8.02496 -5.33737 0.26191 0.60975 1.03554 1.34311 1.35704 1.36805 1.42681 1.48583 1.88933 2.46074 3.02048 3.30133 3.37814 3.41687 3.52773 3.79342 3.83138 3.85472 3.96309 4.07170 4.15219 4.18635 4.24100 4.30637 4.38693 4.50352 4.60163 4.60389 4.69534 4.72036 4.84333 4.89394 4.96011 5.05610 5.05789 5.09396 5.17775 5.27599 5.37038 5.49145 5.66780 5.80487 6.15319 6.23026 6.67414 6.75628 7.09129 7.87068 8.02515 9.19276 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.003200 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.343934 B = 8748.987567 C = 9256.515646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.256 5.256 4 N -0.272 5.272 5 C 0.029 3.971 6 C -0.128 4.128 7 Cl -0.026 7.026 8 C -0.016 4.016 9 C 0.602 3.398 10 O -0.560 6.560 11 N -0.596 5.596 12 C 0.098 3.902 13 C -0.114 4.114 14 C -0.099 4.099 15 H 0.077 0.923 16 C 0.183 3.817 17 H 0.059 0.941 18 C -0.163 4.163 19 N -0.755 5.755 20 C -0.218 4.218 21 H 0.065 0.935 22 C -0.060 4.060 23 N -0.983 5.983 24 Si 0.940 3.060 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.260 1.260 28 C 0.106 3.894 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.224 0.776 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.033 0.967 42 H 0.361 0.639 43 H 0.256 0.744 44 H 0.088 0.912 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 1.265 -30.953 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.045 5.045 4 N -0.102 5.102 5 C -0.148 4.148 6 C -0.166 4.166 7 Cl 0.003 6.997 8 C -0.147 4.147 9 C 0.388 3.612 10 O -0.438 6.438 11 N -0.328 5.328 12 C -0.023 4.023 13 C -0.151 4.151 14 C -0.119 4.119 15 H 0.096 0.904 16 C 0.075 3.925 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.398 5.398 20 C -0.349 4.349 21 H 0.083 0.917 22 C -0.252 4.252 23 N -0.634 5.634 24 Si 0.769 3.231 25 H -0.208 1.208 26 H -0.224 1.224 27 H -0.185 1.185 28 C -0.016 4.016 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.241 0.759 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.193 0.807 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.049 0.571 -31.327 31.736 hybrid contribution -0.711 1.654 1.925 2.636 sum -5.760 2.225 -29.402 30.043 Atomic orbital electron populations 1.22160 0.92831 1.05248 1.02260 1.22475 0.96758 0.74790 1.07126 1.46056 1.44620 1.12982 1.00865 1.73240 1.19175 1.04528 1.13262 1.23978 1.02461 0.96172 0.92211 1.21450 1.11400 0.90251 0.93538 1.98369 1.87167 1.43265 1.70921 1.20967 1.10126 0.94398 0.89174 1.16684 0.82165 0.77581 0.84813 1.90868 1.33549 1.57412 1.61937 1.48497 1.18145 1.54510 1.11612 1.22356 0.84271 1.00227 0.95444 1.22831 1.00007 1.02001 0.90310 1.22565 0.93149 1.00102 0.96046 0.90446 1.20316 0.97228 0.91973 0.82969 0.92333 1.22455 1.00741 0.97780 1.01273 1.42917 1.38999 1.55545 1.02374 1.19059 1.11144 1.20587 0.84160 0.91673 1.25333 1.02145 1.02612 0.95080 1.69848 1.45739 1.50342 0.97489 0.85637 0.80521 0.79700 0.77278 1.20823 1.22350 1.18545 1.22483 0.97857 1.00372 0.80849 0.91455 0.87066 0.94035 0.84368 0.87812 0.75934 0.89044 0.90544 0.87430 0.87741 0.93143 0.89471 0.94810 0.80674 0.93493 0.89453 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 71.98 0.74 -1.31 16 2 C 0.11 1.25 6.91 86.38 0.60 1.85 16 3 N -0.26 -4.68 3.35 -334.60 -1.12 -5.80 16 4 N -0.27 -4.93 11.89 -57.07 -0.68 -5.61 16 5 C 0.03 0.50 12.04 85.22 1.03 1.52 16 6 C -0.13 -2.80 6.89 22.72 0.16 -2.64 16 7 Cl -0.03 -0.59 29.24 -2.72 -0.08 -0.67 16 8 C -0.02 -0.37 5.90 40.76 0.24 -0.13 16 9 C 0.60 16.89 6.94 86.55 0.60 17.49 16 10 O -0.56 -20.64 17.41 -4.17 -0.07 -20.71 16 11 N -0.60 -14.25 3.33 -816.03 -2.71 -16.97 16 12 C 0.10 1.56 6.47 86.74 0.56 2.12 16 13 C -0.11 -1.77 6.31 31.80 0.20 -1.56 16 14 C -0.10 -2.52 3.07 -9.40 -0.03 -2.54 16 15 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 16 C 0.18 5.97 2.84 44.99 0.13 6.10 16 17 H 0.06 1.98 8.08 -2.38 -0.02 1.96 16 18 C -0.16 -4.64 8.85 71.98 0.64 -4.00 16 19 N -0.76 -33.61 4.87 -322.94 -1.57 -35.19 16 20 C -0.22 -12.07 10.41 84.03 0.87 -11.19 16 21 H 0.07 3.89 8.06 -2.91 -0.02 3.86 16 22 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 23 N -0.98 -62.97 13.97 21.65 0.30 -62.67 16 24 Si 0.94 46.82 27.74 68.60 1.90 48.72 16 25 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 27 H -0.26 -12.07 6.52 99.48 0.65 -11.42 16 28 C 0.11 2.97 5.67 86.86 0.49 3.46 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.14 0.82 8.14 -2.38 -0.02 0.81 16 33 H 0.10 1.14 7.65 -2.39 -0.02 1.12 16 34 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.32 5.74 -2.39 -0.01 1.31 16 39 H 0.05 1.43 6.04 -2.39 -0.01 1.41 16 40 H 0.09 1.72 6.07 -2.38 -0.01 1.71 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.36 16.11 4.93 -92.71 -0.46 15.65 16 43 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 44 H 0.09 2.39 5.66 -2.39 -0.01 2.38 16 45 H 0.05 1.69 7.84 -2.39 -0.02 1.67 16 Total: -1.00 -76.70 380.28 3.15 -73.55 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.50 Total: 19.25 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.69 Total: 6.09 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -5.79 Total: -126.23 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.07 Total: -20.71 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -76.70 3.15 -73.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716961264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.698 kcal (2) G-P(sol) polarization free energy of solvation -76.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds