Wall clock time and date at job start Sat Apr 11 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 124.18104 * 2 1 4 4 O 1.21237 * 127.15319 * 359.97438 * 3 2 1 5 5 C 1.51584 * 105.68332 * 179.97438 * 3 2 1 6 6 N 1.47307 * 103.59682 * 0.31953 * 5 3 2 7 7 C 1.46501 * 126.69153 * 179.76616 * 6 5 3 8 8 C 1.50696 * 109.47136 * 270.02208 * 7 6 5 9 9 O 1.21277 * 120.00254 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00174 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00382 * 174.79514 * 10 8 7 12 12 C 1.53003 * 112.94672 * 295.31469 * 11 10 8 13 13 C 1.52996 * 109.46938 * 304.22705 * 12 11 10 14 14 O 1.42905 * 109.46915 * 178.35149 * 13 12 11 15 15 C 1.53943 * 113.74302 * 163.71948 * 11 10 8 16 16 N 1.47809 * 86.03878 * 222.08949 * 15 11 10 17 17 C 1.36943 * 134.45838 * 204.64708 * 16 15 11 18 18 H 1.07998 * 120.00209 * 179.86227 * 17 16 15 19 19 C 1.38819 * 119.99738 * 359.86350 * 17 16 15 20 20 N 1.31615 * 119.99568 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47210 * 89.99967 * 21 19 17 23 23 H 1.48504 * 109.46636 * 209.99840 * 21 19 17 24 24 H 1.48508 * 109.46989 * 329.99554 * 21 19 17 25 25 C 1.47577 * 91.04983 * 24.54953 * 16 15 11 26 26 C 1.33794 * 124.17645 * 180.29739 * 2 1 3 27 27 O 1.21536 * 123.77043 * 359.96288 * 26 2 1 28 28 H 1.09002 * 109.46849 * 269.70308 * 1 2 3 29 29 H 1.08997 * 109.47274 * 149.69663 * 1 2 3 30 30 H 1.09000 * 109.46619 * 29.69835 * 1 2 3 31 31 H 1.09000 * 110.76323 * 241.71135 * 5 3 2 32 32 H 1.09001 * 110.42768 * 118.77326 * 5 3 2 33 33 H 1.08996 * 109.46747 * 30.02118 * 7 6 5 34 34 H 1.09003 * 109.46725 * 150.02008 * 7 6 5 35 35 H 0.97006 * 119.99439 * 354.80561 * 10 8 7 36 36 H 1.08995 * 109.47079 * 64.23473 * 12 11 10 37 37 H 1.09004 * 109.47013 * 184.22955 * 12 11 10 38 38 H 1.08992 * 109.47598 * 298.35373 * 13 12 11 39 39 H 1.09008 * 109.47140 * 58.35997 * 13 12 11 40 40 H 0.96698 * 114.00083 * 180.02562 * 14 13 12 41 41 H 1.09004 * 113.76720 * 336.35627 * 15 11 10 42 42 H 1.08995 * 113.77144 * 107.74782 * 15 11 10 43 43 H 0.97006 * 119.99487 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.76638 * 221.15310 * 25 16 15 45 45 H 1.08998 * 113.87510 * 89.77449 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2222 1.1149 0.0000 4 8 1.8341 2.2635 -0.0004 5 6 3.6597 0.6340 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8061 -0.0144 8 6 5.0028 -2.1315 -1.4376 9 8 4.4116 -1.6035 -2.3555 10 7 5.9938 -3.0093 -1.6906 11 6 6.2811 -3.4124 -3.0693 12 6 5.1292 -4.1828 -3.7179 13 6 4.7766 -5.3955 -2.8543 14 8 3.6756 -6.0934 -3.4399 15 6 7.6539 -4.0865 -3.2448 16 7 7.7792 -3.2778 -4.4757 17 6 8.4854 -3.4088 -5.6416 18 1 8.3999 -2.6569 -6.4121 19 6 9.3111 -4.5082 -5.8331 20 7 9.4155 -5.4242 -4.8939 21 14 10.2749 -4.6866 -7.4233 22 1 11.5988 -4.0304 -7.2759 23 1 10.4676 -6.1275 -7.7262 24 1 9.5244 -4.0437 -8.5318 25 6 6.8362 -2.2744 -3.9448 26 6 2.2166 -1.1069 -0.0057 27 8 1.7602 -2.2333 -0.0109 28 1 -0.3633 -0.0053 1.0277 29 1 -0.3633 -0.8872 -0.5185 30 1 -0.3632 0.8927 -0.5092 31 1 4.1790 0.9697 0.8982 32 1 4.1768 0.9794 -0.8946 33 1 5.4928 -1.3846 0.5004 34 1 4.3112 -2.7158 0.4949 35 1 6.5167 -3.3743 -0.9596 36 1 4.2591 -3.5319 -3.8030 37 1 5.4300 -4.5187 -4.7103 38 1 5.6376 -6.0609 -2.7933 39 1 4.5038 -5.0616 -1.8531 40 1 3.3970 -6.8754 -2.9440 41 1 8.3748 -3.8230 -2.4707 42 1 7.5964 -5.1596 -3.4267 43 1 9.9928 -6.1923 -5.0276 44 1 6.1270 -1.9034 -4.6848 45 1 7.3146 -1.4764 -3.3769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717510310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:38 Heat of formation + Delta-G solvation = -50.945466 kcal Electronic energy + Delta-G solvation = -30700.560071 eV Core-core repulsion = 26336.015213 eV Total energy + Delta-G solvation = -4364.544858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53560 -40.08882 -38.87233 -37.94512 -36.36520 -36.31229 -35.35577 -33.74821 -32.08045 -30.75385 -30.06816 -27.44588 -27.32390 -26.55638 -25.11222 -23.49314 -22.78692 -21.81233 -20.92644 -20.13016 -18.74841 -17.89451 -17.71314 -17.13035 -16.89729 -16.83494 -16.73604 -15.91569 -15.67576 -15.14220 -14.92511 -14.74625 -14.56369 -14.43558 -14.27127 -14.20481 -13.80450 -13.61279 -13.49112 -12.99185 -12.89136 -12.63554 -12.37538 -11.93108 -11.76108 -11.59129 -11.16443 -11.07579 -10.97172 -10.79330 -10.74126 -10.51667 -10.29006 -10.09428 -10.06735 -9.87439 -9.67390 -9.46161 -9.01114 -8.94635 -8.67096 -6.97322 -5.84566 -3.16375 1.35986 1.73016 2.57854 2.71488 2.76088 3.34951 3.39327 3.43289 3.44807 3.74925 4.35579 4.41329 4.47883 4.64962 4.76122 4.82886 4.93489 4.96776 5.01006 5.15390 5.17697 5.23080 5.33098 5.44568 5.50908 5.53914 5.71428 5.77970 5.92150 6.02293 6.27347 6.41259 6.44355 6.60022 6.71586 6.79803 6.81564 7.05439 7.06524 7.24515 7.44000 7.68308 7.83178 7.90152 7.91918 8.38535 8.97599 9.63659 10.49153 11.33048 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.002760 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.977673 B =10144.253812 C =10915.906039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.579 5.579 3 C 0.526 3.474 4 O -0.474 6.474 5 C 0.065 3.935 6 N -0.608 5.608 7 C 0.132 3.868 8 C 0.489 3.511 9 O -0.523 6.523 10 N -0.713 5.713 11 C 0.124 3.876 12 C -0.095 4.095 13 C 0.083 3.917 14 O -0.574 6.574 15 C 0.167 3.833 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.130 3.870 26 C 0.706 3.294 27 O -0.537 6.537 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.398 0.602 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.372 0.628 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.254 0.746 44 H 0.050 0.950 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 7.088 16.618 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C 0.314 3.686 4 O -0.344 6.344 5 C -0.061 4.061 6 N -0.346 5.346 7 C 0.006 3.994 8 C 0.273 3.727 9 O -0.399 6.399 10 N -0.365 5.365 11 C 0.038 3.962 12 C -0.133 4.133 13 C 0.006 3.994 14 O -0.379 6.379 15 C 0.041 3.959 16 N -0.331 5.331 17 C -0.348 4.348 18 H 0.100 0.900 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.003 3.997 26 C 0.408 3.592 27 O -0.410 6.410 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.218 0.782 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.289 7.709 15.249 21.047 hybrid contribution 0.979 -0.683 -0.006 1.194 sum -11.310 7.026 15.243 20.239 Atomic orbital electron populations 1.21827 0.74992 1.04879 1.03520 1.46229 1.09644 1.08094 1.68559 1.20856 0.88881 0.84685 0.74170 1.90817 1.79196 1.17916 1.46504 1.22537 0.95865 0.80806 1.06882 1.46931 1.04743 1.06158 1.76722 1.21220 0.89004 0.93419 0.95737 1.21001 0.80438 0.79875 0.91418 1.90721 1.52218 1.50839 1.46074 1.46178 1.35053 1.45241 1.10041 1.22986 0.96002 0.97730 0.79462 1.21317 0.97222 0.94767 1.00016 1.22110 0.88120 0.93882 0.95309 1.86497 1.52223 1.44521 1.54656 1.22580 0.87231 0.98179 0.87895 1.45709 1.51734 1.21787 1.13889 1.19001 1.18958 1.05591 0.91211 0.90005 1.24770 1.00033 0.97137 0.98339 1.69779 1.41951 1.12197 1.33014 0.86092 0.79887 0.77034 0.82609 1.21608 1.21579 1.20527 1.22772 0.91029 0.91951 0.93954 1.15742 0.81720 0.84202 0.77508 1.90992 1.75068 1.20311 1.54635 0.90943 0.89129 0.89402 0.85753 0.85511 0.86416 0.86315 0.76796 0.91022 0.89163 0.93294 0.94596 0.78199 0.95100 0.89997 0.93568 0.93138 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.73 59.85 0.64 1.36 16 2 N -0.58 -6.14 3.01 -128.16 -0.39 -6.52 16 3 C 0.53 5.28 8.32 -10.55 -0.09 5.20 16 4 O -0.47 -5.81 17.75 5.59 0.10 -5.71 16 5 C 0.06 0.49 7.66 -4.32 -0.03 0.46 16 6 N -0.61 -6.02 2.51 -181.40 -0.45 -6.48 16 7 C 0.13 1.10 6.63 -5.20 -0.03 1.07 16 8 C 0.49 6.42 7.56 -10.99 -0.08 6.33 16 9 O -0.52 -9.15 14.83 5.56 0.08 -9.07 16 10 N -0.71 -9.33 4.53 -49.08 -0.22 -9.55 16 11 C 0.12 2.23 0.67 -134.04 -0.09 2.14 16 12 C -0.09 -1.81 4.81 -26.73 -0.13 -1.94 16 13 C 0.08 1.36 6.83 37.16 0.25 1.61 16 14 O -0.57 -9.45 13.66 -35.23 -0.48 -9.93 16 15 C 0.17 3.58 6.69 -2.84 -0.02 3.56 16 16 N -0.60 -14.96 3.55 -177.51 -0.63 -15.59 16 17 C -0.22 -6.05 10.70 -15.05 -0.16 -6.21 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -26.19 11.39 55.49 0.63 -25.56 16 21 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C 0.13 2.71 7.55 -2.97 -0.02 2.69 16 26 C 0.71 8.78 8.31 -88.01 -0.73 8.05 16 27 O -0.54 -8.43 17.15 5.33 0.09 -8.33 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 31 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.12 0.88 8.03 -51.93 -0.42 0.47 16 35 H 0.40 3.85 8.70 -40.82 -0.36 3.50 16 36 H 0.07 1.47 7.09 -51.93 -0.37 1.10 16 37 H 0.09 2.01 8.02 -51.93 -0.42 1.59 16 38 H 0.05 0.79 7.54 -51.93 -0.39 0.40 16 39 H 0.04 0.52 7.62 -51.92 -0.40 0.13 16 40 H 0.37 4.12 9.12 45.56 0.42 4.54 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.95 6.56 -51.93 -0.34 1.60 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -38.31 382.84 -6.71 -45.02 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.60 Total: 5.10 kcal Atomic # 6 Polarization: 24.64 SS G_CDS: -0.59 Total: 24.05 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -1.06 Total: -63.70 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.21 Total: -33.04 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.31 -6.71 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717510310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.922 kcal (2) G-P(sol) polarization free energy of solvation -38.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds