Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 124.18104 * 2 1 4 4 O 1.21237 * 127.15319 * 359.97438 * 3 2 1 5 5 C 1.51584 * 105.68332 * 179.97438 * 3 2 1 6 6 N 1.47307 * 103.59682 * 0.31953 * 5 3 2 7 7 C 1.46501 * 126.69153 * 179.76616 * 6 5 3 8 8 C 1.50696 * 109.47136 * 270.02208 * 7 6 5 9 9 O 1.21277 * 120.00254 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00174 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00382 * 174.79514 * 10 8 7 12 12 C 1.53003 * 112.94672 * 295.31469 * 11 10 8 13 13 C 1.52996 * 109.46938 * 304.22705 * 12 11 10 14 14 O 1.42905 * 109.46915 * 178.35149 * 13 12 11 15 15 C 1.53943 * 113.74302 * 163.71948 * 11 10 8 16 16 N 1.47809 * 86.03878 * 222.08949 * 15 11 10 17 17 C 1.36943 * 134.45838 * 204.64708 * 16 15 11 18 18 H 1.07998 * 120.00209 * 179.86227 * 17 16 15 19 19 C 1.38819 * 119.99738 * 359.86350 * 17 16 15 20 20 N 1.31615 * 119.99568 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99830 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47210 * 89.99967 * 21 19 17 23 23 H 1.48504 * 109.46636 * 209.99840 * 21 19 17 24 24 H 1.48508 * 109.46989 * 329.99554 * 21 19 17 25 25 C 1.47577 * 91.04983 * 24.54953 * 16 15 11 26 26 C 1.33794 * 124.17645 * 180.29739 * 2 1 3 27 27 O 1.21536 * 123.77043 * 359.96288 * 26 2 1 28 28 H 1.09002 * 109.46849 * 269.70308 * 1 2 3 29 29 H 1.08997 * 109.47274 * 149.69663 * 1 2 3 30 30 H 1.09000 * 109.46619 * 29.69835 * 1 2 3 31 31 H 1.09000 * 110.76323 * 241.71135 * 5 3 2 32 32 H 1.09001 * 110.42768 * 118.77326 * 5 3 2 33 33 H 1.08996 * 109.46747 * 30.02118 * 7 6 5 34 34 H 1.09003 * 109.46725 * 150.02008 * 7 6 5 35 35 H 0.97006 * 119.99439 * 354.80561 * 10 8 7 36 36 H 1.08995 * 109.47079 * 64.23473 * 12 11 10 37 37 H 1.09004 * 109.47013 * 184.22955 * 12 11 10 38 38 H 1.08992 * 109.47598 * 298.35373 * 13 12 11 39 39 H 1.09008 * 109.47140 * 58.35997 * 13 12 11 40 40 H 0.96698 * 114.00083 * 180.02562 * 14 13 12 41 41 H 1.09004 * 113.76720 * 336.35627 * 15 11 10 42 42 H 1.08995 * 113.77144 * 107.74782 * 15 11 10 43 43 H 0.97006 * 119.99487 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.76638 * 221.15310 * 25 16 15 45 45 H 1.08998 * 113.87510 * 89.77449 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2222 1.1149 0.0000 4 8 1.8341 2.2635 -0.0004 5 6 3.6597 0.6340 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8061 -0.0144 8 6 5.0028 -2.1315 -1.4376 9 8 4.4116 -1.6035 -2.3555 10 7 5.9938 -3.0093 -1.6906 11 6 6.2811 -3.4124 -3.0693 12 6 5.1292 -4.1828 -3.7179 13 6 4.7766 -5.3955 -2.8543 14 8 3.6756 -6.0934 -3.4399 15 6 7.6539 -4.0865 -3.2448 16 7 7.7792 -3.2778 -4.4757 17 6 8.4854 -3.4088 -5.6416 18 1 8.3999 -2.6569 -6.4121 19 6 9.3111 -4.5082 -5.8331 20 7 9.4155 -5.4242 -4.8939 21 14 10.2749 -4.6866 -7.4233 22 1 11.5988 -4.0304 -7.2759 23 1 10.4676 -6.1275 -7.7262 24 1 9.5244 -4.0437 -8.5318 25 6 6.8362 -2.2744 -3.9448 26 6 2.2166 -1.1069 -0.0057 27 8 1.7602 -2.2333 -0.0109 28 1 -0.3633 -0.0053 1.0277 29 1 -0.3633 -0.8872 -0.5185 30 1 -0.3632 0.8927 -0.5092 31 1 4.1790 0.9697 0.8982 32 1 4.1768 0.9794 -0.8946 33 1 5.4928 -1.3846 0.5004 34 1 4.3112 -2.7158 0.4949 35 1 6.5167 -3.3743 -0.9596 36 1 4.2591 -3.5319 -3.8030 37 1 5.4300 -4.5187 -4.7103 38 1 5.6376 -6.0609 -2.7933 39 1 4.5038 -5.0616 -1.8531 40 1 3.3970 -6.8754 -2.9440 41 1 8.3748 -3.8230 -2.4707 42 1 7.5964 -5.1596 -3.4267 43 1 9.9928 -6.1923 -5.0276 44 1 6.1270 -1.9034 -4.6848 45 1 7.3146 -1.4764 -3.3769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717510310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = -82.987312 kcal Electronic energy + Delta-G solvation = -30701.949510 eV Core-core repulsion = 26336.015213 eV Total energy + Delta-G solvation = -4365.934296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.33711 -41.42688 -39.82568 -39.26132 -37.71597 -37.23944 -36.16315 -35.24970 -33.82065 -32.10690 -31.06133 -29.03764 -28.13058 -27.54775 -26.82884 -25.05054 -23.70653 -23.27102 -22.09177 -21.09129 -20.16079 -18.85356 -18.73407 -18.57289 -18.32023 -17.76433 -17.69030 -17.13692 -16.77515 -16.64310 -16.21101 -16.01283 -15.78468 -15.51966 -15.36386 -15.13770 -15.09832 -14.90222 -14.49048 -14.33329 -13.76444 -13.66928 -13.53777 -13.32516 -13.28570 -13.07616 -12.83262 -12.77919 -12.56993 -12.25664 -12.06124 -12.04927 -11.72806 -11.43802 -11.37958 -11.14223 -10.92809 -10.89956 -10.80814 -10.05028 -9.93283 -8.94499 -7.93108 -5.25197 0.56240 0.98528 1.46106 1.47367 1.55773 1.67771 1.82897 1.93999 2.30535 2.51933 3.03987 3.14917 3.27454 3.39415 3.62009 3.71259 3.83035 4.12572 4.21443 4.25938 4.29529 4.33246 4.38367 4.41028 4.42438 4.47842 4.50177 4.70300 4.71625 4.74777 4.83728 4.87746 5.02934 5.12319 5.17692 5.23906 5.26802 5.49524 5.73698 5.91172 6.01266 6.29279 6.66454 6.89553 6.91467 6.96160 7.36736 7.57488 8.50681 9.23604 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.002760 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.977673 B =10144.253812 C =10915.906039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.584 5.584 3 C 0.525 3.475 4 O -0.501 6.501 5 C 0.071 3.929 6 N -0.605 5.605 7 C 0.138 3.862 8 C 0.487 3.513 9 O -0.570 6.570 10 N -0.701 5.701 11 C 0.157 3.843 12 C -0.088 4.088 13 C 0.092 3.908 14 O -0.596 6.596 15 C 0.174 3.826 16 N -0.634 5.634 17 C -0.236 4.236 18 H 0.077 0.923 19 C -0.057 4.057 20 N -0.945 5.945 21 Si 0.975 3.025 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.275 1.275 25 C 0.129 3.871 26 C 0.698 3.302 27 O -0.578 6.578 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.172 0.828 32 H 0.130 0.870 33 H 0.175 0.825 34 H 0.136 0.864 35 H 0.420 0.580 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.396 0.604 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.251 0.749 44 H 0.032 0.968 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 7.698 18.928 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C 0.314 3.686 4 O -0.373 6.373 5 C -0.054 4.054 6 N -0.341 5.341 7 C 0.013 3.987 8 C 0.273 3.727 9 O -0.448 6.448 10 N -0.355 5.355 11 C 0.069 3.931 12 C -0.127 4.127 13 C 0.015 3.985 14 O -0.404 6.404 15 C 0.048 3.952 16 N -0.361 5.361 17 C -0.365 4.365 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.593 5.593 21 Si 0.803 3.197 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.200 1.200 25 C 0.003 3.997 26 C 0.401 3.599 27 O -0.454 6.454 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.189 0.811 32 H 0.148 0.852 33 H 0.192 0.808 34 H 0.154 0.846 35 H 0.258 0.742 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.246 0.754 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.736 8.335 17.623 22.754 hybrid contribution 0.721 -0.825 -0.739 1.321 sum -11.015 7.510 16.883 21.512 Atomic orbital electron populations 1.21983 0.74226 1.04828 1.04762 1.46387 1.10468 1.08015 1.68072 1.21262 0.89949 0.84092 0.73265 1.90807 1.79884 1.18771 1.47840 1.22773 0.94250 0.79188 1.09180 1.47121 1.04100 1.07460 1.75435 1.21492 0.90402 0.94606 0.92156 1.21932 0.79078 0.78463 0.93228 1.90724 1.53562 1.52440 1.48121 1.45871 1.35820 1.45514 1.08303 1.22120 0.93916 0.95291 0.81763 1.21170 0.96715 0.95974 0.98874 1.21974 0.88362 0.92696 0.95463 1.86438 1.52136 1.45961 1.55880 1.22469 0.89236 0.96559 0.86922 1.45996 1.52047 1.23716 1.14347 1.19275 1.19111 1.05585 0.92500 0.90546 1.25502 1.01220 0.97020 1.01326 1.69921 1.42539 1.12441 1.34435 0.85140 0.78593 0.76615 0.79338 1.21047 1.21786 1.20030 1.22849 0.90157 0.92575 0.94119 1.16004 0.82699 0.83928 0.77297 1.90957 1.75971 1.21806 1.56656 0.89125 0.89879 0.88731 0.81070 0.85197 0.80802 0.84603 0.74195 0.92710 0.93310 0.93163 0.92031 0.75406 0.94007 0.92597 0.93981 0.95008 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.73 127.77 1.37 2.67 16 2 N -0.58 -11.68 3.01 -796.64 -2.39 -14.08 16 3 C 0.52 9.60 8.32 87.94 0.73 10.33 16 4 O -0.50 -11.66 17.75 -2.90 -0.05 -11.71 16 5 C 0.07 0.82 7.66 85.76 0.66 1.48 16 6 N -0.60 -10.00 2.51 -846.25 -2.12 -12.13 16 7 C 0.14 1.69 6.63 85.63 0.57 2.26 16 8 C 0.49 11.44 7.56 87.65 0.66 12.10 16 9 O -0.57 -19.31 14.83 -3.02 -0.04 -19.36 16 10 N -0.70 -16.54 4.53 -427.58 -1.94 -18.47 16 11 C 0.16 5.57 0.67 5.36 0.00 5.57 16 12 C -0.09 -3.44 4.81 30.59 0.15 -3.29 16 13 C 0.09 2.93 6.83 71.98 0.49 3.42 16 14 O -0.60 -19.17 13.66 -148.98 -2.04 -21.20 16 15 C 0.17 7.43 6.69 86.44 0.58 8.01 16 16 N -0.63 -31.94 3.55 -715.52 -2.54 -34.48 16 17 C -0.24 -13.26 10.70 84.03 0.90 -12.36 16 18 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 19 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 20 N -0.95 -54.36 11.39 21.65 0.25 -54.11 16 21 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 C 0.13 5.43 7.55 86.49 0.65 6.09 16 26 C 0.70 16.23 8.31 179.44 1.49 17.73 16 27 O -0.58 -17.60 17.15 -3.83 -0.07 -17.67 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.42 7.86 -2.39 -0.02 1.40 16 30 H 0.09 1.32 8.00 -2.39 -0.02 1.30 16 31 H 0.17 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.17 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.14 1.37 8.03 -2.39 -0.02 1.35 16 35 H 0.42 6.49 8.70 -92.70 -0.81 5.69 16 36 H 0.05 2.31 7.09 -2.39 -0.02 2.29 16 37 H 0.05 2.28 8.02 -2.38 -0.02 2.26 16 38 H 0.05 1.59 7.54 -2.39 -0.02 1.57 16 39 H 0.06 1.64 7.62 -2.38 -0.02 1.62 16 40 H 0.40 8.17 9.12 -74.06 -0.68 7.49 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 2.70 6.56 -2.39 -0.02 2.68 16 43 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 44 H 0.03 1.44 8.10 -2.39 -0.02 1.42 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -87.26 382.84 -0.63 -87.88 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -0.44 Total: 16.67 kcal Atomic # 6 Polarization: 42.57 SS G_CDS: 8.72 Total: 51.29 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -8.74 Total: -133.26 kcal Atomic # 8 Polarization: -67.75 SS G_CDS: -2.20 Total: -69.94 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -87.26 -0.63 -87.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717510310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.897 kcal (2) G-P(sol) polarization free energy of solvation -87.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds