Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47308 * 2 1 4 4 N 1.28433 * 125.18720 * 265.32241 * 3 2 1 5 5 C 1.30843 * 110.98079 * 180.25986 * 4 3 2 6 6 C 1.39806 * 107.87392 * 359.73397 * 5 4 3 7 7 Cl 1.73601 * 127.33433 * 179.97438 * 6 5 4 8 8 C 1.36752 * 125.18838 * 85.12503 * 3 2 1 9 9 C 1.47035 * 126.90260 * 0.02562 * 8 3 2 10 10 O 1.21640 * 119.99865 * 269.19529 * 9 8 3 11 11 N 1.34778 * 119.99947 * 89.19640 * 9 8 3 12 12 C 1.46498 * 120.00073 * 355.36701 * 11 9 8 13 13 C 1.46502 * 120.00135 * 175.36513 * 11 9 8 14 14 H 1.09001 * 109.46577 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47474 * 240.00261 * 13 11 9 16 16 N 1.46506 * 109.46919 * 54.99499 * 15 13 11 17 17 C 1.36940 * 119.99533 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00246 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99575 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00406 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47154 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47422 * 120.00481 * 21 19 17 24 24 H 1.48507 * 109.46935 * 240.00479 * 21 19 17 25 25 C 1.53000 * 109.47068 * 119.99713 * 13 11 9 26 26 C 1.53003 * 117.49457 * 116.25497 * 25 13 11 27 27 C 1.52998 * 117.49643 * 184.91345 * 25 13 11 28 28 H 1.09001 * 109.47024 * 64.98572 * 1 2 3 29 29 H 1.09001 * 109.47276 * 184.99003 * 1 2 3 30 30 H 1.09000 * 109.46956 * 304.99037 * 1 2 3 31 31 H 1.08997 * 109.46703 * 239.99520 * 2 1 3 32 32 H 1.09007 * 109.46472 * 120.00112 * 2 1 3 33 33 H 1.07996 * 126.05954 * 179.75692 * 5 4 3 34 34 H 1.09001 * 109.47239 * 275.18589 * 12 11 9 35 35 H 1.08999 * 109.47220 * 35.18563 * 12 11 9 36 36 H 1.08996 * 109.47183 * 155.18866 * 12 11 9 37 37 H 1.08990 * 109.47443 * 174.99779 * 15 13 11 38 38 H 1.08998 * 109.46850 * 295.00114 * 15 13 11 39 39 H 0.96999 * 120.00241 * 0.02562 * 16 15 13 40 40 H 0.97002 * 120.00127 * 180.02562 * 20 19 17 41 41 H 1.09001 * 115.55077 * 330.58643 * 25 13 11 42 42 H 1.09004 * 117.49563 * 215.00216 * 26 25 13 43 43 H 1.09000 * 117.49831 * 0.02613 * 26 25 13 44 44 H 1.08996 * 117.50228 * 359.97438 * 27 25 13 45 45 H 1.09003 * 117.49452 * 144.97789 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3458 2.0504 -1.0462 5 6 2.7492 3.2531 -0.7257 6 6 2.6697 3.3761 0.6647 7 17 3.0828 4.7625 1.6243 8 6 2.1916 2.1558 1.1136 9 6 1.9292 1.7690 2.5077 10 8 0.8354 1.9719 2.9996 11 7 2.9007 1.1896 3.2405 12 6 4.1842 0.8527 2.6197 13 6 2.6733 0.8968 4.6578 14 1 1.6692 1.2153 4.9379 15 6 3.7022 1.6478 5.5053 16 7 3.6467 3.0769 5.1877 17 6 4.4822 3.9533 5.8274 18 1 5.1823 3.5909 6.5656 19 6 4.4300 5.3073 5.5261 20 7 3.5772 5.7489 4.6261 21 14 5.5702 6.5027 6.3981 22 1 6.4261 5.7599 7.3578 23 1 6.4271 7.1885 5.3980 24 1 4.7633 7.5102 7.1325 25 6 2.8159 -0.6077 4.8970 26 6 3.9509 -1.0731 5.8114 27 6 2.5011 -1.1329 6.2991 28 1 -0.3633 0.4345 -0.9313 29 1 -0.3634 -1.0238 0.0894 30 1 -0.3633 0.5893 0.8419 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.0838 4.0157 -1.4133 34 1 4.1092 -0.1210 2.1355 35 1 4.4384 1.6090 1.8771 36 1 4.9601 0.8192 3.3845 37 1 3.4789 1.5014 6.5620 38 1 4.6998 1.2659 5.2884 39 1 3.0177 3.4025 4.5250 40 1 3.5411 6.6951 4.4154 41 1 2.5577 -1.2448 4.0511 42 1 4.4393 -2.0164 5.5671 43 1 4.5956 -0.3074 6.2429 44 1 2.1928 -0.4067 7.0512 45 1 2.0354 -2.1155 6.3755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717732019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = 91.785895 kcal Electronic energy + Delta-G solvation = -29147.085456 eV Core-core repulsion = 25229.439059 eV Total energy + Delta-G solvation = -3917.646397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.47274 -39.77263 -37.71933 -35.88280 -35.06522 -34.55139 -33.99540 -31.32012 -30.44705 -29.75062 -28.13394 -26.55685 -24.64094 -24.10456 -22.73432 -22.50417 -21.87441 -21.43257 -19.61701 -18.72091 -17.74745 -17.06606 -16.64112 -16.03187 -15.75892 -15.36015 -15.13711 -14.64980 -14.42243 -14.13435 -13.96675 -13.59321 -13.45656 -13.13826 -12.92290 -12.87964 -12.63616 -12.31273 -12.24029 -12.05978 -11.57975 -11.55942 -11.33605 -11.24082 -11.21403 -11.08028 -10.80400 -10.73287 -10.43354 -10.05881 -9.89305 -9.88749 -9.70121 -9.65350 -9.12492 -8.82964 -8.41924 -8.33949 -6.85097 -5.67077 -2.96984 1.67807 2.05106 2.65513 2.70336 3.04091 3.26348 3.46181 3.51871 3.54049 3.90443 4.35414 4.48639 4.62120 4.69454 4.81341 4.90511 5.01085 5.01708 5.06620 5.25206 5.30438 5.38361 5.43825 5.51490 5.57236 5.60381 5.62534 5.71609 5.80507 5.88766 5.89296 5.90963 6.01534 6.20918 6.24420 6.32024 6.35392 6.43530 6.63569 6.71103 6.87117 7.51740 7.74855 8.03000 8.27234 8.47819 9.60955 10.17776 10.54156 11.52726 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.005720 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.516200 B = 4894.205148 C = 7214.728828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 N -0.270 5.270 4 N -0.280 5.280 5 C 0.014 3.986 6 C -0.127 4.127 7 Cl 0.040 6.960 8 C -0.007 4.007 9 C 0.598 3.402 10 O -0.517 6.517 11 N -0.578 5.578 12 C 0.084 3.916 13 C 0.161 3.839 14 H 0.105 0.895 15 C 0.143 3.857 16 N -0.726 5.726 17 C -0.241 4.241 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.900 3.100 22 H -0.283 1.283 23 H -0.293 1.293 24 H -0.293 1.293 25 C -0.159 4.159 26 C -0.182 4.182 27 C -0.172 4.172 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.191 0.809 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.389 0.611 40 H 0.251 0.749 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -15.534 -8.902 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.000 4.000 3 N -0.060 5.060 4 N -0.110 5.110 5 C -0.165 4.165 6 C -0.164 4.164 7 Cl 0.068 6.932 8 C -0.137 4.137 9 C 0.382 3.618 10 O -0.391 6.391 11 N -0.310 5.310 12 C -0.059 4.059 13 C 0.058 3.942 14 H 0.123 0.877 15 C 0.015 3.985 16 N -0.371 5.371 17 C -0.372 4.372 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.563 5.563 21 Si 0.731 3.269 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.178 4.178 26 C -0.219 4.219 27 C -0.210 4.210 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.207 0.793 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.223 0.777 40 H 0.061 0.939 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.452 -16.101 -9.344 18.776 hybrid contribution 0.741 1.528 0.896 1.920 sum -1.711 -14.573 -8.448 16.931 Atomic orbital electron populations 1.22214 0.93256 1.03613 1.04085 1.21981 0.96290 0.76763 1.05008 1.45603 1.46494 1.11938 1.01943 1.73116 1.17765 1.06538 1.13564 1.23488 1.04976 0.94798 0.93209 1.21873 1.08650 0.92589 0.93316 1.98572 1.91147 1.36006 1.67426 1.21139 1.09747 0.93205 0.89560 1.16825 0.84280 0.77385 0.83296 1.90834 1.23353 1.53179 1.71742 1.47525 1.14257 1.58950 1.10260 1.21694 0.85663 0.99314 0.99210 1.20954 1.02316 0.91592 0.79357 0.87691 1.21107 0.95201 0.86669 0.95558 1.42314 1.45732 1.00037 1.49065 1.19151 1.13110 0.88234 1.16708 0.91498 1.24663 0.99347 0.96759 0.99432 1.69689 1.38196 1.13411 1.35009 0.86241 0.80200 0.81638 0.78781 1.20819 1.22051 1.22066 1.22549 1.04850 0.95934 0.94515 1.23201 0.91808 1.02972 1.03886 1.22958 0.98875 1.02307 0.96830 0.91369 0.90083 0.90868 0.87593 0.88756 0.79256 0.93580 0.91309 0.89696 0.95334 0.95639 0.77664 0.93938 0.88004 0.89235 0.87406 0.88331 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.24 37.16 0.38 -1.30 16 2 C 0.12 1.21 6.80 -4.04 -0.03 1.18 16 3 N -0.27 -3.82 3.35 -57.11 -0.19 -4.02 16 4 N -0.28 -4.09 11.89 30.61 0.36 -3.72 16 5 C 0.01 0.21 12.04 -17.39 -0.21 0.00 16 6 C -0.13 -2.26 6.73 -38.89 -0.26 -2.52 16 7 Cl 0.04 0.82 28.71 -51.86 -1.49 -0.66 16 8 C -0.01 -0.12 4.93 -82.00 -0.40 -0.53 16 9 C 0.60 11.09 6.65 -12.69 -0.08 11.00 16 10 O -0.52 -11.23 16.45 5.24 0.09 -11.14 16 11 N -0.58 -9.55 2.24 -175.35 -0.39 -9.94 16 12 C 0.08 1.19 9.56 59.85 0.57 1.77 16 13 C 0.16 2.68 2.55 -67.93 -0.17 2.51 16 14 H 0.11 2.02 6.91 -51.93 -0.36 1.66 16 15 C 0.14 2.77 4.10 -4.04 -0.02 2.75 16 16 N -0.73 -18.05 5.43 -59.91 -0.33 -18.38 16 17 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -26.53 12.53 55.49 0.70 -25.83 16 21 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 C -0.16 -2.00 5.48 -90.62 -0.50 -2.50 16 26 C -0.18 -2.05 9.50 -26.69 -0.25 -2.31 16 27 C -0.17 -1.95 10.00 -26.69 -0.27 -2.22 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 33 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 1.07 6.88 -51.93 -0.36 0.71 16 36 H 0.08 1.22 6.53 -51.93 -0.34 0.88 16 37 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 38 H 0.03 0.48 5.59 -51.93 -0.29 0.19 16 39 H 0.39 10.41 7.06 -40.82 -0.29 10.12 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.11 1.36 5.80 -51.93 -0.30 1.06 16 44 H 0.10 1.20 7.98 -51.93 -0.41 0.78 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -32.59 387.16 -8.44 -41.03 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.51 Total: 8.70 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.49 Total: 0.87 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.15 Total: -61.89 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 17 Polarization: 0.82 SS G_CDS: -1.49 Total: -0.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.59 -8.44 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717732019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.815 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds