Wall clock time and date at job start Sat Apr 11 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47308 * 2 1 4 4 N 1.28433 * 125.18720 * 265.32241 * 3 2 1 5 5 C 1.30843 * 110.98079 * 180.25986 * 4 3 2 6 6 C 1.39806 * 107.87392 * 359.73397 * 5 4 3 7 7 Cl 1.73601 * 127.33433 * 179.97438 * 6 5 4 8 8 C 1.36752 * 125.18838 * 85.12503 * 3 2 1 9 9 C 1.47035 * 126.90260 * 0.02562 * 8 3 2 10 10 O 1.21640 * 119.99865 * 269.19529 * 9 8 3 11 11 N 1.34778 * 119.99947 * 89.19640 * 9 8 3 12 12 C 1.46498 * 120.00073 * 355.36701 * 11 9 8 13 13 C 1.46502 * 120.00135 * 175.36513 * 11 9 8 14 14 H 1.09001 * 109.46577 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47474 * 240.00261 * 13 11 9 16 16 N 1.46506 * 109.46919 * 54.99499 * 15 13 11 17 17 C 1.36940 * 119.99533 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00246 * 0.02562 * 17 16 15 19 19 C 1.38809 * 119.99575 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00406 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47154 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47422 * 120.00481 * 21 19 17 24 24 H 1.48507 * 109.46935 * 240.00479 * 21 19 17 25 25 C 1.53000 * 109.47068 * 119.99713 * 13 11 9 26 26 C 1.53003 * 117.49457 * 116.25497 * 25 13 11 27 27 C 1.52998 * 117.49643 * 184.91345 * 25 13 11 28 28 H 1.09001 * 109.47024 * 64.98572 * 1 2 3 29 29 H 1.09001 * 109.47276 * 184.99003 * 1 2 3 30 30 H 1.09000 * 109.46956 * 304.99037 * 1 2 3 31 31 H 1.08997 * 109.46703 * 239.99520 * 2 1 3 32 32 H 1.09007 * 109.46472 * 120.00112 * 2 1 3 33 33 H 1.07996 * 126.05954 * 179.75692 * 5 4 3 34 34 H 1.09001 * 109.47239 * 275.18589 * 12 11 9 35 35 H 1.08999 * 109.47220 * 35.18563 * 12 11 9 36 36 H 1.08996 * 109.47183 * 155.18866 * 12 11 9 37 37 H 1.08990 * 109.47443 * 174.99779 * 15 13 11 38 38 H 1.08998 * 109.46850 * 295.00114 * 15 13 11 39 39 H 0.96999 * 120.00241 * 0.02562 * 16 15 13 40 40 H 0.97002 * 120.00127 * 180.02562 * 20 19 17 41 41 H 1.09001 * 115.55077 * 330.58643 * 25 13 11 42 42 H 1.09004 * 117.49563 * 215.00216 * 26 25 13 43 43 H 1.09000 * 117.49831 * 0.02613 * 26 25 13 44 44 H 1.08996 * 117.50228 * 359.97438 * 27 25 13 45 45 H 1.09003 * 117.49452 * 144.97789 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3458 2.0504 -1.0462 5 6 2.7492 3.2531 -0.7257 6 6 2.6697 3.3761 0.6647 7 17 3.0828 4.7625 1.6243 8 6 2.1916 2.1558 1.1136 9 6 1.9292 1.7690 2.5077 10 8 0.8354 1.9719 2.9996 11 7 2.9007 1.1896 3.2405 12 6 4.1842 0.8527 2.6197 13 6 2.6733 0.8968 4.6578 14 1 1.6692 1.2153 4.9379 15 6 3.7022 1.6478 5.5053 16 7 3.6467 3.0769 5.1877 17 6 4.4822 3.9533 5.8274 18 1 5.1823 3.5909 6.5656 19 6 4.4300 5.3073 5.5261 20 7 3.5772 5.7489 4.6261 21 14 5.5702 6.5027 6.3981 22 1 6.4261 5.7599 7.3578 23 1 6.4271 7.1885 5.3980 24 1 4.7633 7.5102 7.1325 25 6 2.8159 -0.6077 4.8970 26 6 3.9509 -1.0731 5.8114 27 6 2.5011 -1.1329 6.2991 28 1 -0.3633 0.4345 -0.9313 29 1 -0.3634 -1.0238 0.0894 30 1 -0.3633 0.5893 0.8419 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.0838 4.0157 -1.4133 34 1 4.1092 -0.1210 2.1355 35 1 4.4384 1.6090 1.8771 36 1 4.9601 0.8192 3.3845 37 1 3.4789 1.5014 6.5620 38 1 4.6998 1.2659 5.2884 39 1 3.0177 3.4025 4.5250 40 1 3.5411 6.6951 4.4154 41 1 2.5577 -1.2448 4.0511 42 1 4.4393 -2.0164 5.5671 43 1 4.5956 -0.3074 6.2429 44 1 2.1928 -0.4067 7.0512 45 1 2.0354 -2.1155 6.3755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717732019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:41 Heat of formation + Delta-G solvation = 71.733382 kcal Electronic energy + Delta-G solvation = -29147.954998 eV Core-core repulsion = 25229.439059 eV Total energy + Delta-G solvation = -3918.515939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.67363 -41.12520 -38.97887 -37.33726 -36.42448 -35.79843 -35.51575 -33.10195 -31.89135 -30.77602 -29.63159 -27.88065 -26.28315 -25.13890 -24.27954 -23.65483 -23.02290 -22.59261 -20.80777 -20.05488 -19.01056 -18.98335 -17.98653 -17.29921 -16.89942 -16.64878 -16.54332 -16.09102 -15.78280 -15.33784 -15.11554 -15.01186 -14.86455 -14.68276 -14.51302 -14.01124 -13.79688 -13.70101 -13.29988 -13.10632 -12.99914 -12.94100 -12.73764 -12.65183 -12.60971 -12.33904 -12.30911 -12.20358 -11.94677 -11.70037 -11.52894 -11.33901 -11.14272 -10.91888 -10.79692 -10.28955 -9.75921 -9.69036 -8.88238 -7.79713 -5.09966 0.40299 0.84926 1.29510 1.42750 1.47880 1.49099 1.57405 1.69201 2.06605 2.59975 2.93517 3.19541 3.47478 3.50592 3.68322 3.89837 3.91437 3.96312 4.09546 4.12554 4.15125 4.21731 4.22428 4.32540 4.36254 4.44922 4.50106 4.63655 4.70420 4.74420 4.82126 4.86758 4.93185 5.07870 5.10301 5.11832 5.15387 5.23390 5.35728 5.48583 5.58289 5.61922 6.16915 6.35093 6.83784 6.87950 7.44550 8.18727 8.43712 9.38818 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009484 B = 0.005720 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.516200 B = 4894.205148 C = 7214.728828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.257 5.257 4 N -0.271 5.271 5 C 0.017 3.983 6 C -0.150 4.150 7 Cl 0.003 6.997 8 C -0.016 4.016 9 C 0.597 3.403 10 O -0.561 6.561 11 N -0.572 5.572 12 C 0.084 3.916 13 C 0.168 3.832 14 H 0.072 0.928 15 C 0.144 3.856 16 N -0.740 5.740 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.059 4.059 20 N -0.937 5.937 21 Si 0.959 3.041 22 H -0.270 1.270 23 H -0.297 1.297 24 H -0.301 1.301 25 C -0.163 4.163 26 C -0.169 4.169 27 C -0.168 4.168 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.037 0.963 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.217 0.783 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.376 0.624 40 H 0.243 0.757 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 -18.640 -9.692 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.047 5.047 4 N -0.102 5.102 5 C -0.160 4.160 6 C -0.188 4.188 7 Cl 0.032 6.968 8 C -0.147 4.147 9 C 0.382 3.618 10 O -0.439 6.439 11 N -0.302 5.302 12 C -0.059 4.059 13 C 0.065 3.935 14 H 0.090 0.910 15 C 0.017 3.983 16 N -0.384 5.384 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.253 4.253 20 N -0.586 5.586 21 Si 0.790 3.210 22 H -0.195 1.195 23 H -0.225 1.225 24 H -0.229 1.229 25 C -0.182 4.182 26 C -0.206 4.206 27 C -0.206 4.206 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.056 0.944 31 H 0.157 0.843 32 H 0.125 0.875 33 H 0.233 0.767 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.209 0.791 40 H 0.052 0.948 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.379 -19.273 -10.124 21.814 hybrid contribution 0.390 2.380 1.144 2.669 sum -0.989 -16.893 -8.979 19.157 Atomic orbital electron populations 1.22181 0.92976 1.04995 1.02381 1.22478 0.96518 0.74823 1.07270 1.46035 1.45069 1.12852 1.00728 1.73142 1.17417 1.06327 1.13317 1.23866 1.04418 0.95491 0.92271 1.21994 1.10638 0.91901 0.94281 1.98553 1.91620 1.38011 1.68628 1.20988 1.10227 0.93727 0.89743 1.17029 0.83998 0.76869 0.83909 1.90805 1.25208 1.55128 1.72746 1.47598 1.14632 1.57964 1.10032 1.21843 0.84287 1.00862 0.98860 1.20772 0.99480 0.94263 0.79030 0.90977 1.21265 0.96772 0.84229 0.96043 1.42504 1.45095 1.02136 1.48653 1.19456 1.13002 0.88835 1.16368 0.91081 1.25349 1.01039 0.98332 1.00572 1.69861 1.39591 1.12909 1.36274 0.85298 0.78490 0.79479 0.77734 1.19457 1.22477 1.22883 1.22400 1.06881 0.92861 0.96066 1.23226 0.91421 1.03557 1.02370 1.23050 0.99208 1.03029 0.95276 0.91530 0.86783 0.94382 0.84331 0.87453 0.76652 0.89421 0.92890 0.89797 0.95369 0.94156 0.79099 0.94822 0.85947 0.86398 0.89002 0.89835 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.24 71.98 0.74 -2.19 16 2 C 0.11 1.86 6.80 86.38 0.59 2.44 16 3 N -0.26 -6.88 3.35 -334.59 -1.12 -8.00 16 4 N -0.27 -7.43 11.89 -57.06 -0.68 -8.11 16 5 C 0.02 0.49 12.04 85.22 1.03 1.51 16 6 C -0.15 -5.43 6.73 22.72 0.15 -5.27 16 7 Cl 0.00 0.14 28.71 -2.72 -0.08 0.06 16 8 C -0.02 -0.56 4.93 40.76 0.20 -0.36 16 9 C 0.60 22.51 6.65 86.55 0.58 23.08 16 10 O -0.56 -25.50 16.45 -4.16 -0.07 -25.57 16 11 N -0.57 -18.69 2.24 -826.93 -1.86 -20.55 16 12 C 0.08 2.23 9.56 127.77 1.22 3.45 16 13 C 0.17 5.57 2.55 44.99 0.11 5.68 16 14 H 0.07 2.89 6.91 -2.39 -0.02 2.87 16 15 C 0.14 5.58 4.10 86.38 0.35 5.93 16 16 N -0.74 -37.60 5.43 -343.46 -1.87 -39.46 16 17 C -0.24 -13.51 9.99 84.03 0.84 -12.67 16 18 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 19 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 20 N -0.94 -56.00 12.53 21.65 0.27 -55.73 16 21 Si 0.96 46.56 29.55 68.60 2.03 48.59 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 24 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 25 C -0.16 -3.72 5.48 -10.79 -0.06 -3.78 16 26 C -0.17 -3.30 9.50 30.62 0.29 -3.01 16 27 C -0.17 -3.40 10.00 30.62 0.31 -3.10 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.11 1.61 7.93 -2.38 -0.02 1.59 16 33 H 0.22 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.61 6.88 -2.39 -0.02 1.59 16 36 H 0.08 2.25 6.53 -2.39 -0.02 2.24 16 37 H 0.03 1.11 7.59 -2.39 -0.02 1.10 16 38 H 0.04 1.47 5.59 -2.39 -0.01 1.46 16 39 H 0.38 20.92 7.06 -92.71 -0.65 20.27 16 40 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.09 2.12 5.80 -2.39 -0.01 2.11 16 44 H 0.08 1.95 7.98 -2.39 -0.02 1.93 16 45 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -73.81 387.16 3.81 -70.00 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.36 Total: 29.89 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.81 Total: 8.87 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -5.25 Total: -131.84 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.07 Total: -25.57 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -73.81 3.81 -70.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717732019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.738 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds