Wall clock time and date at job start Sat Apr 11 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00094 * 2 1 4 4 H 1.07998 * 119.99736 * 153.72581 * 3 2 1 5 5 C 1.38808 * 120.00052 * 334.00935 * 3 2 1 6 6 N 1.31626 * 120.00326 * 350.77403 * 5 3 2 7 7 Si 1.86808 * 119.99965 * 170.77131 * 5 3 2 8 8 H 1.48499 * 109.46809 * 60.00193 * 7 5 3 9 9 H 1.48501 * 109.47019 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47125 * 299.99877 * 7 5 3 11 11 C 1.46500 * 120.00002 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.46605 * 269.99845 * 11 2 1 13 13 H 1.08992 * 109.50318 * 54.93570 * 12 11 2 14 14 C 1.53043 * 109.49346 * 175.00175 * 12 11 2 15 15 C 1.53038 * 109.53555 * 181.31521 * 14 12 11 16 16 C 1.53192 * 109.31443 * 298.63042 * 15 14 12 17 17 N 1.46928 * 108.77221 * 54.63743 * 16 15 14 18 18 C 1.34773 * 120.63042 * 126.41594 * 17 16 15 19 19 O 1.21575 * 120.00243 * 175.98008 * 18 17 16 20 20 C 1.47717 * 120.00093 * 355.98049 * 18 17 16 21 21 C 1.41496 * 126.51160 * 186.52431 * 20 18 17 22 22 C 1.35513 * 105.48246 * 180.02562 * 21 20 18 23 23 Cl 1.73601 * 126.40133 * 179.97438 * 22 21 20 24 24 N 1.35060 * 107.19925 * 359.97438 * 22 21 20 25 25 C 1.46502 * 124.89032 * 179.97438 * 24 22 21 26 26 N 1.28468 * 110.23297 * 359.72884 * 24 22 21 27 27 C 1.46923 * 118.73819 * 306.39124 * 17 16 15 28 28 H 1.08991 * 109.47294 * 93.06172 * 1 2 3 29 29 H 1.08999 * 109.46902 * 213.06949 * 1 2 3 30 30 H 1.08999 * 109.46972 * 333.06515 * 1 2 3 31 31 H 0.96990 * 120.00183 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.46972 * 29.99182 * 11 2 1 33 33 H 1.08999 * 109.47418 * 149.99635 * 11 2 1 34 34 H 1.09001 * 109.45786 * 301.33259 * 14 12 11 35 35 H 1.09001 * 109.46458 * 61.29101 * 14 12 11 36 36 H 1.08998 * 109.50379 * 58.58463 * 15 14 12 37 37 H 1.09007 * 109.49864 * 178.67887 * 15 14 12 38 38 H 1.08997 * 109.58895 * 174.42219 * 16 15 14 39 39 H 1.09000 * 109.58625 * 294.85049 * 16 15 14 40 40 H 1.08004 * 127.26078 * 0.03781 * 21 20 18 41 41 H 1.09003 * 109.46498 * 89.99943 * 25 24 22 42 42 H 1.08990 * 109.47426 * 210.00300 * 25 24 22 43 43 H 1.08996 * 109.46847 * 330.00784 * 25 24 22 44 44 H 1.09008 * 109.58836 * 293.82310 * 27 17 16 45 45 H 1.08997 * 109.58762 * 173.39826 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1460 1.2341 0.4140 5 6 1.5610 2.3272 -0.5268 6 7 0.4261 2.2374 -1.1874 7 14 2.3794 3.9908 -0.2982 8 1 3.7302 3.9668 -0.9145 9 1 1.5568 5.0410 -0.9506 10 1 2.5020 4.2871 1.1518 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7109 1.4418 13 1 1.5067 -1.7547 1.9816 14 6 3.1063 -3.0947 1.4437 15 6 3.3318 -3.5521 2.8867 16 6 4.2760 -2.5703 3.5877 17 7 3.7249 -1.2140 3.4638 18 6 3.5336 -0.4481 4.5561 19 8 3.1460 0.6978 4.4349 20 6 3.7949 -1.0010 5.9008 21 6 3.5208 -0.3711 7.1379 22 6 3.9259 -1.2483 8.0880 23 17 3.8379 -1.0190 9.8065 24 7 4.4110 -2.3343 7.4481 25 6 4.9549 -3.5231 8.1093 26 7 4.3221 -2.1772 6.1762 27 6 3.3868 -0.7083 2.1264 28 1 -0.3633 -0.0549 -1.0261 29 1 -0.3633 -0.8612 0.5608 30 1 -0.3633 0.9162 0.4655 31 1 0.0149 3.0348 -1.5558 32 1 1.6084 -2.0281 -0.5146 33 1 3.1499 -1.1382 -0.5144 34 1 2.4543 -3.8050 0.9353 35 1 4.0635 -3.0449 0.9247 36 1 2.3779 -3.5784 3.4134 37 1 3.7760 -4.5476 2.8876 38 1 4.3617 -2.8351 4.6415 39 1 5.2588 -2.6098 3.1178 40 1 3.0812 0.6032 7.2923 41 1 4.1534 -4.2413 8.2822 42 1 5.7172 -3.9750 7.4748 43 1 5.3986 -3.2374 9.0630 44 1 4.2970 -0.5959 1.5373 45 1 2.8858 0.2555 2.2161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731420121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:59 Heat of formation + Delta-G solvation = 79.168360 kcal Electronic energy + Delta-G solvation = -28125.443864 eV Core-core repulsion = 24207.250330 eV Total energy + Delta-G solvation = -3918.193534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.05089 -39.68330 -37.40706 -37.28381 -35.40284 -33.94805 -32.86236 -31.50541 -30.91507 -29.97940 -28.03125 -25.88231 -25.70763 -25.20478 -22.79612 -22.43379 -21.75240 -20.73411 -19.81126 -19.10129 -17.64062 -16.90889 -16.81509 -16.50375 -15.48474 -14.91778 -14.84082 -14.64248 -14.46367 -14.31536 -13.78438 -13.49920 -13.46039 -13.27454 -13.12972 -13.00721 -12.81771 -12.55165 -12.33790 -12.20854 -12.02215 -11.61843 -11.39228 -10.90098 -10.78418 -10.68872 -10.67351 -10.33549 -10.19055 -10.11205 -10.05253 -9.77212 -9.67536 -9.52158 -9.45327 -9.31995 -8.37595 -8.25444 -6.56027 -5.61726 -3.08848 1.10099 1.23954 1.72604 2.13941 3.25539 3.48717 3.50585 3.54580 3.60029 3.91849 4.50576 4.57471 4.62267 4.79610 4.85887 4.99946 5.10665 5.15943 5.27832 5.32893 5.50233 5.54745 5.61526 5.73390 5.86831 5.91664 6.00385 6.06459 6.22104 6.23224 6.26851 6.38703 6.43785 6.59009 6.68342 6.86503 6.92490 6.99897 7.09068 7.44916 7.51798 7.74539 7.81655 7.93325 8.42209 8.55199 9.37146 9.99896 10.50300 11.44672 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014493 B = 0.003096 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.453558 B = 9040.843681 C =10369.894063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.601 5.601 3 C -0.252 4.252 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.910 5.910 7 Si 0.900 3.100 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.158 3.842 12 C -0.119 4.119 13 H 0.065 0.935 14 C -0.115 4.115 15 C -0.129 4.129 16 C 0.075 3.925 17 N -0.595 5.595 18 C 0.593 3.407 19 O -0.519 6.519 20 C 0.012 3.988 21 C -0.151 4.151 22 C 0.051 3.949 23 Cl 0.000 7.000 24 N -0.281 5.281 25 C 0.080 3.920 26 N -0.243 5.243 27 C 0.122 3.878 28 H 0.018 0.982 29 H -0.009 1.009 30 H 0.054 0.946 31 H 0.252 0.748 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.130 0.870 39 H 0.061 0.939 40 H 0.175 0.825 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.574 -15.945 20.420 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.323 5.323 3 C -0.382 4.382 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.555 5.555 7 Si 0.730 3.270 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.030 3.970 12 C -0.141 4.141 13 H 0.084 0.916 14 C -0.153 4.153 15 C -0.167 4.167 16 C -0.049 4.049 17 N -0.327 5.327 18 C 0.378 3.622 19 O -0.393 6.393 20 C -0.148 4.148 21 C -0.180 4.180 22 C -0.100 4.100 23 Cl 0.028 6.972 24 N -0.070 5.070 25 C -0.060 4.060 26 N -0.079 5.079 27 C 0.001 3.999 28 H 0.036 0.964 29 H 0.009 0.991 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.192 0.808 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.079 0.921 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.707 -16.197 19.982 27.493 hybrid contribution 0.095 1.401 0.696 1.567 sum 9.802 -14.795 20.678 27.250 Atomic orbital electron populations 1.20740 0.82887 0.96813 0.97594 1.43849 1.01728 1.00609 1.86128 1.19148 1.00059 0.86251 1.32714 0.91398 1.25066 0.97751 0.98671 0.97878 1.70040 1.19149 1.27742 1.38542 0.86399 0.78580 0.83955 0.78087 1.20982 1.21746 1.20665 1.20715 0.96149 0.88644 0.91501 1.22235 0.98115 0.93046 1.00726 0.91640 1.21578 1.00795 0.97363 0.95599 1.21860 0.99864 0.98061 0.96915 1.22628 0.95968 0.81297 1.04992 1.48098 1.62172 1.15364 1.07044 1.16913 0.78447 0.85228 0.81648 1.90873 1.46260 1.16803 1.85332 1.22075 1.05113 0.91966 0.95623 1.21501 1.05932 1.01698 0.88823 1.21909 1.09003 0.92033 0.87036 1.98403 1.97128 1.96024 1.05604 1.45754 1.43766 1.14204 1.03319 1.22285 1.00927 0.84365 0.98460 1.73407 1.20696 1.19130 0.94662 1.21945 0.98499 1.00035 0.79380 0.96404 0.99100 0.92751 0.93818 0.94355 0.93436 0.92150 0.92121 0.92083 0.91525 0.85389 0.92064 0.80805 0.89158 0.87812 0.88533 0.92074 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.23 8.98 59.85 0.54 4.76 16 2 N -0.60 -15.41 2.81 -181.12 -0.51 -15.91 16 3 C -0.25 -7.06 8.32 -15.06 -0.13 -7.18 16 4 H 0.07 1.86 6.62 -52.49 -0.35 1.51 16 5 C 0.00 0.13 5.12 -17.43 -0.09 0.04 16 6 N -0.91 -27.37 10.74 55.49 0.60 -26.77 16 7 Si 0.90 22.94 29.56 -169.99 -5.03 17.92 16 8 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 11 C 0.16 3.27 5.19 -4.04 -0.02 3.25 16 12 C -0.12 -2.13 2.54 -90.50 -0.23 -2.36 16 13 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.12 -1.59 5.17 -26.69 -0.14 -1.72 16 15 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 16 C 0.08 0.98 6.32 -3.71 -0.02 0.95 16 17 N -0.59 -10.01 2.97 -173.93 -0.52 -10.52 16 18 C 0.59 10.76 7.70 -12.39 -0.10 10.66 16 19 O -0.52 -11.47 16.36 5.30 0.09 -11.38 16 20 C 0.01 0.17 6.90 -82.77 -0.57 -0.40 16 21 C -0.15 -1.94 10.80 -39.31 -0.42 -2.36 16 22 C 0.05 0.52 7.44 -17.10 -0.13 0.39 16 23 Cl 0.00 0.00 28.67 -51.86 -1.49 -1.48 16 24 N -0.28 -2.64 3.70 -64.88 -0.24 -2.88 16 25 C 0.08 0.35 11.14 59.85 0.67 1.02 16 26 N -0.24 -2.92 8.31 33.42 0.28 -2.64 16 27 C 0.12 2.34 4.64 -3.71 -0.02 2.32 16 28 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 29 H -0.01 -0.22 8.10 -51.93 -0.42 -0.64 16 30 H 0.05 1.52 6.89 -51.93 -0.36 1.16 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 38 H 0.13 1.56 3.71 -117.39 -0.44 1.13 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.27 7.71 -51.93 -0.40 -0.13 16 44 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 45 H 0.12 2.72 5.38 -51.93 -0.28 2.44 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -33.92 372.69 -8.86 -42.78 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.84 Total: -2.37 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -0.82 Total: 7.64 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.39 Total: -58.73 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.92 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.49 Total: -1.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.92 -8.86 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731420121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.952 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds