Wall clock time and date at job start Sat Apr 11 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48498 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47305 * 300.00462 * 3 2 1 6 6 H 1.48503 * 109.46880 * 60.00179 * 3 2 1 7 7 C 1.38806 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99841 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00120 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47260 * 179.97438 * 10 9 7 12 12 O 1.21290 * 119.99554 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00319 * 180.02562 * 11 10 9 14 14 C 1.46964 * 120.59822 * 179.97438 * 13 11 10 15 15 C 1.53361 * 108.63801 * 235.24627 * 14 13 11 16 16 N 1.46969 * 108.63677 * 310.57392 * 15 14 13 17 17 C 1.34772 * 120.59497 * 235.20294 * 16 15 14 18 18 O 1.21280 * 120.00259 * 4.28380 * 17 16 15 19 19 C 1.50703 * 120.00030 * 184.28475 * 17 16 15 20 20 C 1.52996 * 109.47118 * 202.15300 * 19 17 16 21 21 C 1.53005 * 109.47210 * 179.97438 * 20 19 17 22 22 C 1.53003 * 109.46730 * 60.00109 * 21 20 19 23 23 C 1.53005 * 109.47036 * 299.99830 * 22 21 20 24 24 C 1.53001 * 109.46910 * 60.00646 * 23 22 21 25 25 C 1.46965 * 118.80968 * 55.47771 * 16 15 14 26 26 C 1.46969 * 120.59413 * 0.02562 * 13 11 10 27 27 H 0.96993 * 120.00732 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47275 * 59.99699 * 10 9 7 29 29 H 1.08993 * 109.46930 * 300.00052 * 10 9 7 30 30 H 1.09005 * 109.60885 * 115.50047 * 14 13 11 31 31 H 1.09008 * 109.60908 * 354.99327 * 14 13 11 32 32 H 1.09003 * 109.61390 * 190.82966 * 15 14 13 33 33 H 1.09004 * 109.61216 * 70.32163 * 15 14 13 34 34 H 1.09003 * 109.46652 * 322.15266 * 19 17 16 35 35 H 1.09000 * 109.47062 * 60.00167 * 20 19 17 36 36 H 1.08999 * 109.47018 * 300.00227 * 20 19 17 37 37 H 1.08998 * 109.47462 * 180.02562 * 21 20 19 38 38 H 1.09003 * 109.46777 * 300.00099 * 21 20 19 39 39 H 1.08999 * 109.47102 * 59.99805 * 22 21 20 40 40 H 1.08995 * 109.46840 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47088 * 300.00481 * 23 22 21 42 42 H 1.09000 * 109.46912 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.46965 * 180.02562 * 24 23 22 44 44 H 1.08992 * 109.47647 * 59.99332 * 24 23 22 45 45 H 1.09003 * 109.61137 * 64.26676 * 25 16 15 46 46 H 1.08999 * 109.61017 * 184.77943 * 25 16 15 47 47 H 1.09004 * 109.61052 * 244.50306 * 26 13 11 48 48 H 1.09003 * 109.60683 * 5.00567 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0010 13 7 2.8443 -6.3431 0.0007 14 6 2.3433 -7.7247 0.0019 15 6 2.9553 -8.4669 1.1963 16 7 4.4074 -8.2401 1.1963 17 6 5.2641 -9.2804 1.1978 18 8 4.8412 -10.4145 1.1207 19 6 6.7478 -9.0346 1.2953 20 6 7.5026 -10.2429 0.7377 21 6 9.0089 -9.9931 0.8361 22 6 9.3961 -9.7816 2.3011 23 6 8.6412 -8.5732 2.8587 24 6 7.1349 -8.8231 2.7604 25 6 4.9084 -6.8585 1.2008 26 6 4.2964 -6.1163 0.0014 27 1 -0.4851 0.8399 0.0004 28 1 3.1246 -3.7313 0.8894 29 1 3.1245 -3.7313 -0.8905 30 1 2.6340 -8.2200 -0.9246 31 1 1.2570 -7.7198 0.0918 32 1 2.7517 -9.5340 1.1073 33 1 2.5255 -8.0861 2.1229 34 1 7.0074 -8.1464 0.7193 35 1 7.2271 -10.3934 -0.3061 36 1 7.2428 -11.1311 1.3137 37 1 9.5467 -10.8537 0.4384 38 1 9.2683 -9.1050 0.2598 39 1 9.1366 -10.6696 2.8774 40 1 10.4691 -9.6032 2.3712 41 1 8.9006 -7.6851 2.2824 42 1 8.9174 -8.4222 3.9023 43 1 6.5971 -7.9620 3.1572 44 1 6.8755 -9.7111 3.3365 45 1 4.6145 -6.3658 2.1277 46 1 5.9950 -6.8631 1.1147 47 1 4.7265 -6.4967 -0.9252 48 1 4.4999 -5.0491 0.0908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069397313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:14 Heat of formation + Delta-G solvation = -82.339823 kcal Electronic energy + Delta-G solvation = -27686.388848 eV Core-core repulsion = 23866.775843 eV Total energy + Delta-G solvation = -3819.613005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95042 -39.58173 -38.02955 -36.89274 -34.11563 -32.47499 -32.43979 -31.16092 -31.08711 -29.45326 -27.51054 -25.54486 -24.45997 -23.83625 -22.98607 -22.31614 -20.59989 -19.81917 -18.71062 -17.89139 -17.22476 -16.64710 -16.36207 -15.82039 -15.70865 -15.54236 -15.26818 -14.84664 -14.56342 -14.51319 -14.28843 -14.01643 -13.89704 -13.48670 -13.32906 -13.14657 -12.74959 -12.64438 -12.56562 -12.46049 -11.99327 -11.94543 -11.77605 -11.62936 -11.51005 -11.45471 -11.10809 -11.06288 -11.04385 -10.80240 -10.78989 -10.53522 -9.85190 -9.83720 -9.48434 -9.35920 -9.11640 -8.43510 -8.27554 -6.55459 -6.26010 -3.97134 2.33717 2.51351 2.92404 2.96333 3.18318 3.22516 3.27655 3.51612 4.02914 4.15479 4.23702 4.30468 4.42952 4.53593 4.65383 4.71098 4.80643 4.82348 4.86482 4.98432 5.01018 5.05454 5.08535 5.09543 5.12517 5.17658 5.27982 5.34375 5.43032 5.48909 5.53852 5.60621 5.63770 5.67836 5.69380 5.74393 5.76694 5.80548 5.80904 5.87585 6.02192 6.03479 6.17866 6.46781 7.06514 7.42774 7.55290 7.88882 8.30654 8.45032 9.19363 10.81446 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.002369 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.203672 B =11818.002386 C =13159.887539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.535 3.465 12 O -0.513 6.513 13 N -0.621 5.621 14 C 0.101 3.899 15 C 0.097 3.903 16 N -0.611 5.611 17 C 0.520 3.480 18 O -0.541 6.541 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.109 4.109 25 C 0.088 3.912 26 C 0.094 3.906 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.615 -18.658 3.694 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.387 6.387 13 N -0.358 5.358 14 C -0.023 4.023 15 C -0.026 4.026 16 N -0.345 5.345 17 C 0.309 3.691 18 O -0.418 6.418 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.035 4.035 26 C -0.031 4.031 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.117 0.883 47 H 0.091 0.909 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.416 -19.449 3.649 26.361 hybrid contribution 1.972 1.447 -0.029 2.446 sum 19.388 -18.002 3.619 26.704 Atomic orbital electron populations 1.70017 1.05969 1.27416 1.46794 1.25001 0.95029 0.99069 0.94511 0.86114 0.79555 0.81865 0.77933 1.19602 1.20555 1.20561 1.22883 0.94882 0.91554 1.59003 0.90875 1.85457 1.04840 0.96386 1.96692 1.23553 1.06621 0.95295 1.04688 1.20390 0.86218 0.86171 0.74858 1.90704 1.15125 1.85129 1.47717 1.48051 1.06085 1.05829 1.75867 1.21899 1.01305 0.81362 0.97714 1.22044 0.79299 1.02306 0.98933 1.48102 1.06680 1.06224 1.73497 1.20736 0.88682 0.84378 0.75306 1.90682 1.79267 1.22119 1.49693 1.21397 0.91121 1.01189 0.99106 1.21378 0.94063 0.97056 1.01380 1.21555 0.95559 1.01871 0.96711 1.21567 0.99726 0.98478 0.96188 1.21528 0.94162 0.98460 1.01350 1.21491 0.96767 1.02570 0.93816 1.22375 0.99868 0.81697 0.99600 1.22173 0.80780 1.02052 0.98055 0.92188 0.89218 0.89205 0.91369 0.87623 0.87932 0.90803 0.88797 0.91658 0.90776 0.91642 0.91852 0.91871 0.91897 0.91609 0.91510 0.91338 0.91227 0.90240 0.88287 0.90904 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.80 9.50 30.94 0.29 -14.50 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.89 4.50 36.01 0.16 -2.73 16 11 C 0.54 9.69 7.72 -10.99 -0.08 9.61 16 12 O -0.51 -11.35 15.27 5.55 0.08 -11.27 16 13 N -0.62 -8.29 2.95 -172.24 -0.51 -8.80 16 14 C 0.10 1.22 6.59 -3.60 -0.02 1.19 16 15 C 0.10 1.05 6.60 -3.60 -0.02 1.02 16 16 N -0.61 -5.97 2.94 -172.25 -0.51 -6.48 16 17 C 0.52 5.45 6.83 -10.99 -0.08 5.38 16 18 O -0.54 -7.59 15.47 5.56 0.09 -7.50 16 19 C -0.11 -0.79 1.68 -91.77 -0.15 -0.94 16 20 C -0.10 -0.76 4.70 -26.73 -0.13 -0.88 16 21 C -0.12 -0.68 5.92 -26.73 -0.16 -0.84 16 22 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 23 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 24 C -0.11 -0.70 5.11 -26.73 -0.14 -0.84 16 25 C 0.09 0.69 6.10 -3.39 -0.02 0.67 16 26 C 0.09 0.89 6.52 -3.39 -0.02 0.87 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.55 7.72 -51.91 -0.40 1.15 16 29 H 0.09 1.58 7.91 -51.92 -0.41 1.17 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.11 1.42 6.99 -51.92 -0.36 1.06 16 32 H 0.10 1.14 6.99 -51.93 -0.36 0.78 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.55 6.25 -51.93 -0.32 0.22 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.66 7.88 -51.93 -0.41 0.26 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.42 7.74 -51.93 -0.40 0.02 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.52 5.37 -51.93 -0.28 0.24 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.10 0.94 5.91 -51.93 -0.31 0.63 16 LS Contribution 386.99 15.07 5.83 5.83 Total: -1.00 -35.06 386.99 -10.17 -45.23 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.88 Total: -2.47 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -0.78 Total: -1.62 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: -0.28 Total: -40.27 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.17 Total: -18.77 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.06 -10.17 -45.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069397313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.110 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds