Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86797 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47352 * 240.00016 * 3 2 1 5 5 H 1.48503 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99736 * 3 2 1 7 7 C 1.39889 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99642 * 175.55921 * 7 2 1 9 9 C 1.41155 * 120.00359 * 355.55915 * 7 2 1 10 10 C 1.40866 * 120.16409 * 214.78171 * 9 7 2 11 11 C 1.36373 * 119.82819 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.17086 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83714 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99767 * 35.30061 * 13 12 11 15 15 O 1.21580 * 119.99762 * 355.70424 * 14 13 12 16 16 N 1.34770 * 119.99945 * 175.43441 * 14 13 12 17 17 C 1.46502 * 120.00211 * 180.27223 * 16 14 13 18 18 H 1.09003 * 109.46536 * 324.99698 * 17 16 14 19 19 C 1.52999 * 109.47045 * 84.99706 * 17 16 14 20 20 O 1.42899 * 109.46857 * 65.00441 * 19 17 16 21 21 C 1.52993 * 109.47381 * 205.00096 * 17 16 14 22 22 C 1.50706 * 109.47370 * 64.99694 * 21 17 16 23 23 C 1.38228 * 119.99882 * 269.73154 * 22 21 17 24 24 C 1.38239 * 119.99866 * 179.76585 * 23 22 21 25 25 C 1.38239 * 119.99787 * 0.50222 * 24 23 22 26 26 C 1.38239 * 119.99963 * 359.75064 * 25 24 23 27 27 C 1.38232 * 119.99608 * 89.99918 * 22 21 17 28 28 C 1.39485 * 120.32700 * 0.27531 * 12 11 10 29 29 C 1.36372 * 120.17007 * 359.44316 * 28 12 11 30 30 H 0.96993 * 120.00346 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.08641 * 0.02562 * 10 9 7 32 32 H 1.08008 * 119.91808 * 179.97438 * 11 10 9 33 33 H 0.96997 * 120.00236 * 215.29537 * 13 12 11 34 34 H 0.96998 * 120.00013 * 0.27531 * 16 14 13 35 35 H 1.08999 * 109.47291 * 185.00237 * 19 17 16 36 36 H 1.08996 * 109.47519 * 305.00455 * 19 17 16 37 37 H 0.96698 * 113.99929 * 180.02562 * 20 19 17 38 38 H 1.09004 * 109.47454 * 184.99742 * 21 17 16 39 39 H 1.09006 * 109.47268 * 304.99664 * 21 17 16 40 40 H 1.08001 * 120.00498 * 359.97438 * 23 22 21 41 41 H 1.07992 * 120.00438 * 180.22552 * 24 23 22 42 42 H 1.07996 * 120.00360 * 179.72282 * 25 24 23 43 43 H 1.08000 * 119.99872 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00247 * 0.02562 * 27 22 21 45 45 H 1.08001 * 119.91197 * 179.72301 * 28 12 11 46 46 H 1.08003 * 120.08588 * 180.27162 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2128 -0.0719 9 6 1.3058 -2.4321 0.0957 10 6 1.8651 -3.5178 0.7976 11 6 1.1806 -4.6941 0.8849 12 6 -0.0699 -4.8239 0.2809 13 7 -0.7625 -6.0283 0.3738 14 6 -0.6809 -6.7676 1.4979 15 8 0.0580 -6.4229 2.3998 16 7 -1.4224 -7.8858 1.6243 17 6 -1.3382 -8.6861 2.8485 18 1 -0.3175 -8.6601 3.2300 19 6 -2.2903 -8.1120 3.8996 20 8 -3.6388 -8.2525 3.4481 21 6 -1.7308 -10.1324 2.5404 22 6 -0.7217 -10.7371 1.5985 23 6 -0.9093 -10.6445 0.2322 24 6 0.0188 -11.1950 -0.6319 25 6 1.1292 -11.8472 -0.1293 26 6 1.3141 -11.9444 1.2372 27 6 0.3886 -11.3893 2.1011 28 6 -0.6274 -3.7553 -0.4211 29 6 0.0426 -2.5710 -0.5121 30 1 -0.4850 0.8400 -0.0004 31 1 2.8335 -3.4189 1.2655 32 1 1.6083 -5.5277 1.4223 33 1 -1.3037 -6.3353 -0.3703 34 1 -2.0118 -8.1608 0.9047 35 1 -2.1633 -8.6515 4.8382 36 1 -2.0671 -7.0564 4.0542 37 1 -4.2983 -7.9086 4.0660 38 1 -1.7542 -10.7076 3.4660 39 1 -2.7171 -10.1502 2.0765 40 1 -1.7793 -10.1390 -0.1605 41 1 -0.1258 -11.1194 -1.6994 42 1 1.8520 -12.2812 -0.8042 43 1 2.1814 -12.4544 1.6298 44 1 0.5328 -11.4658 3.1687 45 1 -1.5942 -3.8646 -0.8900 46 1 -0.3923 -1.7430 -1.0523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079145141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = -34.340567 kcal Electronic energy + Delta-G solvation = -28533.228536 eV Core-core repulsion = 24580.252984 eV Total energy + Delta-G solvation = -3952.975552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.19605 -39.30590 -37.80440 -36.92853 -35.01688 -34.25004 -32.98129 -32.21479 -31.03005 -29.80157 -29.42203 -28.42426 -26.18314 -24.85275 -22.75846 -22.39527 -21.54794 -20.98659 -20.46520 -20.00027 -18.08437 -17.45071 -17.16331 -16.99603 -16.53227 -15.63153 -15.41724 -15.19191 -15.12053 -14.76453 -14.31074 -14.03627 -13.83630 -13.75733 -13.54590 -13.16497 -12.95847 -12.81897 -12.64401 -12.27092 -12.09293 -11.94560 -11.63388 -11.47270 -11.28559 -11.12574 -11.10943 -11.04669 -10.92184 -10.67586 -10.16983 -10.01790 -9.46896 -9.39702 -9.17961 -9.06898 -8.90222 -8.80947 -8.73119 -7.46938 -6.75869 -6.55070 -4.27215 1.21566 1.27004 2.73702 3.07481 3.12149 3.14309 3.16588 3.23482 3.63413 3.75953 4.02909 4.19168 4.49903 4.64990 4.68994 4.77419 4.83190 4.89922 4.96961 5.13290 5.18476 5.26260 5.36946 5.46652 5.55051 5.68272 5.71841 5.84288 5.90142 5.96268 6.26131 6.32090 6.37890 6.44716 6.52213 6.69971 6.84279 6.86634 6.92597 7.11934 7.22929 7.34576 7.46491 7.49511 7.72255 7.94385 8.04692 8.16484 8.38105 8.56053 8.70591 8.99835 9.00486 9.18299 10.36264 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002420 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.216458 B =11567.878088 C =12462.138758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.074 0.926 9 C 0.098 3.902 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.027 3.973 13 N -0.668 5.668 14 C 0.697 3.303 15 O -0.582 6.582 16 N -0.737 5.737 17 C 0.177 3.823 18 H 0.100 0.900 19 C 0.061 3.939 20 O -0.570 6.570 21 C -0.084 4.084 22 C -0.078 4.078 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.124 4.124 29 C -0.140 4.140 30 H 0.277 0.723 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.391 0.609 34 H 0.392 0.608 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.377 0.623 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.090 0.910 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 -21.047 2.613 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.494 4.494 8 H 0.092 0.908 9 C 0.095 3.905 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.066 4.066 13 N -0.313 5.313 14 C 0.398 3.602 15 O -0.460 6.460 16 N -0.393 5.393 17 C 0.071 3.929 18 H 0.118 0.882 19 C -0.018 4.018 20 O -0.375 6.375 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.135 4.135 28 C -0.145 4.145 29 C -0.160 4.160 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.224 0.776 34 H 0.226 0.774 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.223 0.777 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.108 0.892 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.352 -20.833 2.951 21.711 hybrid contribution -0.495 0.828 -0.078 0.968 sum -5.848 -20.005 2.872 21.039 Atomic orbital electron populations 1.69759 1.07227 1.28639 1.38626 1.25852 0.94926 1.01042 0.92666 0.86271 0.79785 0.80268 0.79703 1.19121 1.20507 1.19164 1.19437 0.94626 0.90258 1.45088 0.90767 1.17695 0.92331 0.91994 0.88473 1.20804 1.01145 0.94986 1.05470 1.20424 0.92771 0.97903 0.99607 1.17080 0.93684 0.85013 1.10812 1.42100 1.51666 1.22073 1.15453 1.16009 0.81040 0.80099 0.83033 1.90890 1.42667 1.71404 1.41001 1.45026 1.47651 1.26647 1.19972 1.20770 0.99168 0.88514 0.84430 0.88210 1.22729 0.82310 1.00716 0.96092 1.86426 1.15987 1.85475 1.49630 1.20821 0.98060 0.94057 0.99209 1.19843 0.96042 0.97751 0.94208 1.20996 0.99454 0.99672 0.92810 1.21147 0.94628 0.98039 0.99705 1.21139 0.97881 0.99878 0.95470 1.21130 0.99018 0.99882 0.93601 1.21042 0.94311 0.98472 0.99721 1.20294 0.98375 0.93092 1.02737 1.21164 0.97315 0.95439 1.02102 0.91218 0.88726 0.87369 0.77649 0.77420 0.93080 0.92450 0.77661 0.89670 0.89537 0.86400 0.86168 0.86313 0.86231 0.86170 0.89223 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.62 10.60 55.54 0.59 -21.03 16 2 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 3 Si 0.91 19.40 29.56 -169.99 -5.03 14.37 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.62 9.02 -37.86 -0.34 -12.96 16 8 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 10 C -0.20 -5.31 9.74 -39.26 -0.38 -5.69 16 11 C -0.09 -2.15 8.61 -39.79 -0.34 -2.49 16 12 C 0.03 0.61 6.31 -83.56 -0.53 0.09 16 13 N -0.67 -12.19 5.31 -14.10 -0.07 -12.27 16 14 C 0.70 12.64 8.36 -86.92 -0.73 11.92 16 15 O -0.58 -12.92 13.42 5.30 0.07 -12.85 16 16 N -0.74 -9.68 4.49 -58.68 -0.26 -9.94 16 17 C 0.18 2.04 2.36 -67.93 -0.16 1.88 16 18 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 19 C 0.06 0.65 6.85 37.16 0.25 0.91 16 20 O -0.57 -5.56 12.83 -35.23 -0.45 -6.01 16 21 C -0.08 -0.75 4.61 -27.88 -0.13 -0.87 16 22 C -0.08 -0.78 4.95 -104.62 -0.52 -1.30 16 23 C -0.11 -1.10 9.11 -39.58 -0.36 -1.46 16 24 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 25 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 28 C -0.12 -2.91 9.90 -39.79 -0.39 -3.30 16 29 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 30 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 31 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.11 2.68 6.22 -52.48 -0.33 2.35 16 33 H 0.39 5.70 8.83 -40.82 -0.36 5.34 16 34 H 0.39 4.29 7.87 -40.82 -0.32 3.97 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.38 2.27 9.12 45.56 0.42 2.69 16 38 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.09 0.76 7.67 -51.93 -0.40 0.36 16 40 H 0.12 0.98 7.60 -52.49 -0.40 0.59 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 46 H 0.13 3.54 6.14 -52.48 -0.32 3.22 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -33.00 386.63 -11.01 -44.02 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -5.45 Total: 17.67 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -6.23 Total: -19.78 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.25 Total: -43.24 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.38 Total: -18.86 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.00 -11.01 -44.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079145141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.675 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds