Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86797 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47352 * 240.00016 * 3 2 1 5 5 H 1.48503 * 109.47095 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99736 * 3 2 1 7 7 C 1.39889 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99642 * 175.55921 * 7 2 1 9 9 C 1.41155 * 120.00359 * 355.55915 * 7 2 1 10 10 C 1.40866 * 120.16409 * 214.78171 * 9 7 2 11 11 C 1.36373 * 119.82819 * 180.02562 * 10 9 7 12 12 C 1.39484 * 120.17086 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83714 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99767 * 35.30061 * 13 12 11 15 15 O 1.21580 * 119.99762 * 355.70424 * 14 13 12 16 16 N 1.34770 * 119.99945 * 175.43441 * 14 13 12 17 17 C 1.46502 * 120.00211 * 180.27223 * 16 14 13 18 18 H 1.09003 * 109.46536 * 324.99698 * 17 16 14 19 19 C 1.52999 * 109.47045 * 84.99706 * 17 16 14 20 20 O 1.42899 * 109.46857 * 65.00441 * 19 17 16 21 21 C 1.52993 * 109.47381 * 205.00096 * 17 16 14 22 22 C 1.50706 * 109.47370 * 64.99694 * 21 17 16 23 23 C 1.38228 * 119.99882 * 269.73154 * 22 21 17 24 24 C 1.38239 * 119.99866 * 179.76585 * 23 22 21 25 25 C 1.38239 * 119.99787 * 0.50222 * 24 23 22 26 26 C 1.38239 * 119.99963 * 359.75064 * 25 24 23 27 27 C 1.38232 * 119.99608 * 89.99918 * 22 21 17 28 28 C 1.39485 * 120.32700 * 0.27531 * 12 11 10 29 29 C 1.36372 * 120.17007 * 359.44316 * 28 12 11 30 30 H 0.96993 * 120.00346 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.08641 * 0.02562 * 10 9 7 32 32 H 1.08008 * 119.91808 * 179.97438 * 11 10 9 33 33 H 0.96997 * 120.00236 * 215.29537 * 13 12 11 34 34 H 0.96998 * 120.00013 * 0.27531 * 16 14 13 35 35 H 1.08999 * 109.47291 * 185.00237 * 19 17 16 36 36 H 1.08996 * 109.47519 * 305.00455 * 19 17 16 37 37 H 0.96698 * 113.99929 * 180.02562 * 20 19 17 38 38 H 1.09004 * 109.47454 * 184.99742 * 21 17 16 39 39 H 1.09006 * 109.47268 * 304.99664 * 21 17 16 40 40 H 1.08001 * 120.00498 * 359.97438 * 23 22 21 41 41 H 1.07992 * 120.00438 * 180.22552 * 24 23 22 42 42 H 1.07996 * 120.00360 * 179.72282 * 25 24 23 43 43 H 1.08000 * 119.99872 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00247 * 0.02562 * 27 22 21 45 45 H 1.08001 * 119.91197 * 179.72301 * 28 12 11 46 46 H 1.08003 * 120.08588 * 180.27162 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2128 -0.0719 9 6 1.3058 -2.4321 0.0957 10 6 1.8651 -3.5178 0.7976 11 6 1.1806 -4.6941 0.8849 12 6 -0.0699 -4.8239 0.2809 13 7 -0.7625 -6.0283 0.3738 14 6 -0.6809 -6.7676 1.4979 15 8 0.0580 -6.4229 2.3998 16 7 -1.4224 -7.8858 1.6243 17 6 -1.3382 -8.6861 2.8485 18 1 -0.3175 -8.6601 3.2300 19 6 -2.2903 -8.1120 3.8996 20 8 -3.6388 -8.2525 3.4481 21 6 -1.7308 -10.1324 2.5404 22 6 -0.7217 -10.7371 1.5985 23 6 -0.9093 -10.6445 0.2322 24 6 0.0188 -11.1950 -0.6319 25 6 1.1292 -11.8472 -0.1293 26 6 1.3141 -11.9444 1.2372 27 6 0.3886 -11.3893 2.1011 28 6 -0.6274 -3.7553 -0.4211 29 6 0.0426 -2.5710 -0.5121 30 1 -0.4850 0.8400 -0.0004 31 1 2.8335 -3.4189 1.2655 32 1 1.6083 -5.5277 1.4223 33 1 -1.3037 -6.3353 -0.3703 34 1 -2.0118 -8.1608 0.9047 35 1 -2.1633 -8.6515 4.8382 36 1 -2.0671 -7.0564 4.0542 37 1 -4.2983 -7.9086 4.0660 38 1 -1.7542 -10.7076 3.4660 39 1 -2.7171 -10.1502 2.0765 40 1 -1.7793 -10.1390 -0.1605 41 1 -0.1258 -11.1194 -1.6994 42 1 1.8520 -12.2812 -0.8042 43 1 2.1814 -12.4544 1.6298 44 1 0.5328 -11.4658 3.1687 45 1 -1.5942 -3.8646 -0.8900 46 1 -0.3923 -1.7430 -1.0523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079145141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = -55.562863 kcal Electronic energy + Delta-G solvation = -28534.148804 eV Core-core repulsion = 24580.252984 eV Total energy + Delta-G solvation = -3953.895820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.52947 -40.24919 -39.29227 -38.13453 -36.21539 -35.79645 -34.71946 -33.29243 -31.73380 -31.47434 -30.96275 -29.99214 -26.95106 -26.71172 -23.80743 -23.44939 -23.00731 -22.45182 -21.65494 -21.46553 -19.49613 -19.13456 -18.33237 -18.18867 -17.56332 -17.04988 -16.67636 -16.47111 -16.07748 -15.80591 -15.71466 -15.52800 -15.09367 -14.86552 -14.63639 -14.47045 -14.23387 -13.99324 -13.91669 -13.61191 -13.57003 -13.23787 -13.03079 -12.91150 -12.79250 -12.69278 -12.46578 -12.27546 -11.85667 -11.78796 -11.76071 -11.38245 -11.21181 -11.04501 -10.89380 -10.61793 -10.06175 -9.76358 -9.54688 -9.44048 -8.66116 -8.47686 -6.30112 0.48251 0.54602 0.87672 1.16695 1.39995 1.49812 1.52584 1.79300 2.23823 2.27570 2.83700 2.89972 3.36616 3.42437 3.70504 3.75974 3.99144 4.01874 4.19251 4.28081 4.36310 4.39982 4.41105 4.49754 4.55234 4.66626 4.69468 4.77186 4.86806 4.94737 5.06335 5.15566 5.17315 5.20548 5.23519 5.35803 5.46780 5.55521 5.60739 5.66854 5.71502 5.76584 5.85255 6.06282 6.14380 6.17286 6.28890 6.42492 6.70629 6.87507 6.99277 7.03743 7.18331 7.69996 8.44976 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002420 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.216458 B =11567.878088 C =12462.138758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.219 4.219 11 C -0.098 4.098 12 C 0.045 3.955 13 N -0.661 5.661 14 C 0.695 3.305 15 O -0.624 6.624 16 N -0.714 5.714 17 C 0.173 3.827 18 H 0.080 0.920 19 C 0.068 3.932 20 O -0.575 6.575 21 C -0.069 4.069 22 C -0.091 4.091 23 C -0.123 4.123 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.132 4.132 27 C -0.131 4.131 28 C -0.122 4.122 29 C -0.157 4.157 30 H 0.284 0.716 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.412 0.588 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.394 0.606 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.123 0.877 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 -22.182 2.593 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.531 4.531 8 H 0.090 0.910 9 C 0.064 3.936 10 C -0.239 4.239 11 C -0.118 4.118 12 C -0.050 4.050 13 N -0.308 5.308 14 C 0.396 3.604 15 O -0.505 6.505 16 N -0.370 5.370 17 C 0.067 3.933 18 H 0.098 0.902 19 C -0.011 4.011 20 O -0.383 6.383 21 C -0.106 4.106 22 C -0.091 4.091 23 C -0.141 4.141 24 C -0.149 4.149 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.148 4.148 28 C -0.142 4.142 29 C -0.177 4.177 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.248 0.752 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.244 0.756 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.141 0.859 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.750 -22.041 2.915 23.235 hybrid contribution -0.160 0.978 -0.040 0.992 sum -6.910 -21.063 2.875 22.353 Atomic orbital electron populations 1.69825 1.08536 1.29927 1.38836 1.26720 0.95817 1.04237 0.91628 0.85168 0.78502 0.75654 0.79800 1.18247 1.19224 1.19058 1.19679 0.94781 0.91377 1.47256 0.91030 1.18000 0.93400 0.92650 0.89581 1.20916 1.01522 0.95517 1.05943 1.20505 0.93744 0.97404 1.00140 1.17090 0.92933 0.86396 1.08555 1.41895 1.51548 1.20791 1.16615 1.16168 0.81013 0.80905 0.82290 1.90869 1.44569 1.72681 1.42376 1.44877 1.46296 1.24832 1.21023 1.20937 0.98655 0.89916 0.83760 0.90200 1.22547 0.82749 0.98910 0.96906 1.86375 1.15761 1.85555 1.50632 1.20734 0.97870 0.91991 1.00041 1.20028 0.96435 0.98092 0.94553 1.21258 1.00017 0.99842 0.92972 1.21433 0.94761 0.98095 1.00629 1.21439 0.98318 0.99933 0.95942 1.21425 0.99644 1.00050 0.93824 1.21331 0.94411 0.98461 1.00643 1.20522 0.99313 0.92055 1.02311 1.21152 0.97482 0.96324 1.02738 0.90540 0.88773 0.87630 0.75181 0.75719 0.90302 0.95836 0.75629 0.87663 0.88791 0.85025 0.84838 0.84913 0.84766 0.84855 0.85912 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.38 10.60 21.82 0.23 -45.15 16 2 C 0.03 1.44 5.42 85.23 0.46 1.90 16 3 Si 0.99 39.95 29.56 68.60 2.03 41.98 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.50 -28.14 9.02 23.39 0.21 -27.93 16 8 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 9 C 0.07 3.74 5.55 -21.28 -0.12 3.62 16 10 C -0.22 -11.80 9.74 22.48 0.22 -11.58 16 11 C -0.10 -4.91 8.61 22.13 0.19 -4.72 16 12 C 0.04 2.01 6.31 38.57 0.24 2.25 16 13 N -0.66 -23.15 5.31 -316.78 -1.68 -24.83 16 14 C 0.70 24.56 8.36 179.06 1.50 26.05 16 15 O -0.62 -27.85 13.42 -3.97 -0.05 -27.91 16 16 N -0.71 -17.52 4.49 -457.83 -2.05 -19.57 16 17 C 0.17 3.68 2.36 44.99 0.11 3.79 16 18 H 0.08 2.08 7.58 -2.39 -0.02 2.06 16 19 C 0.07 1.34 6.85 71.98 0.49 1.83 16 20 O -0.58 -9.65 12.83 -148.98 -1.91 -11.56 16 21 C -0.07 -1.05 4.61 29.85 0.14 -0.91 16 22 C -0.09 -1.65 4.95 -19.87 -0.10 -1.75 16 23 C -0.12 -2.20 9.11 22.27 0.20 -2.00 16 24 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 25 C -0.14 -2.52 10.05 22.27 0.22 -2.30 16 26 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 27 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 28 C -0.12 -5.60 9.90 22.13 0.22 -5.39 16 29 C -0.16 -8.38 8.62 22.48 0.19 -8.19 16 30 H 0.28 13.91 8.30 -92.71 -0.77 13.15 16 31 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 32 H 0.11 5.34 6.22 -2.91 -0.02 5.33 16 33 H 0.41 10.94 8.83 -92.71 -0.82 10.13 16 34 H 0.41 7.80 7.87 -92.71 -0.73 7.07 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.39 3.69 9.12 -74.06 -0.68 3.01 16 38 H 0.11 1.22 8.09 -2.38 -0.02 1.20 16 39 H 0.09 1.34 7.67 -2.38 -0.02 1.32 16 40 H 0.13 1.87 7.60 -2.91 -0.02 1.85 16 41 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 44 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 46 H 0.12 6.59 6.14 -2.91 -0.02 6.57 16 Total: -1.00 -73.31 386.63 0.22 -73.10 By element: Atomic # 1 Polarization: 46.95 SS G_CDS: -1.19 Total: 45.76 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 4.85 Total: -31.81 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -3.50 Total: -89.55 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -1.96 Total: -39.47 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -73.31 0.22 -73.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079145141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.533 kcal (2) G-P(sol) polarization free energy of solvation -73.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds