Wall clock time and date at job start Sat Apr 11 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34777 * 120.59893 * 124.62428 * 12 11 10 14 14 O 1.21275 * 120.00207 * 180.02562 * 13 12 11 15 15 C 1.50707 * 119.99596 * 0.02562 * 13 12 11 16 16 O 1.42896 * 109.46991 * 180.02562 * 15 13 12 17 17 C 1.35888 * 116.99960 * 179.97438 * 16 15 13 18 18 C 1.39846 * 119.56476 * 0.02562 * 17 16 15 19 19 C 1.35987 * 120.92937 * 179.97438 * 18 17 16 20 20 C 1.40589 * 119.73460 * 359.97438 * 19 18 17 21 21 C 1.40520 * 121.22686 * 180.02562 * 20 19 18 22 22 C 1.36107 * 119.67390 * 179.97438 * 21 20 19 23 23 C 1.39378 * 120.99513 * 0.02562 * 22 21 20 24 24 C 1.36092 * 120.97792 * 359.97438 * 23 22 21 25 25 C 1.40571 * 119.65595 * 0.02562 * 24 23 22 26 26 C 1.36574 * 119.56780 * 179.73072 * 17 16 15 27 27 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 28 28 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 29 29 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 31 31 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 32 32 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 33 33 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 34 34 H 1.09008 * 109.46880 * 300.00291 * 15 13 12 35 35 H 1.08996 * 109.47269 * 59.99699 * 15 13 12 36 36 H 1.07998 * 119.53692 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.13356 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.16775 * 359.96073 * 21 20 19 39 39 H 1.07999 * 119.50588 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.50870 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.16562 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.18595 * 359.97438 * 26 17 16 43 43 H 1.09001 * 109.60759 * 295.47709 * 27 12 11 44 44 H 1.08998 * 109.74755 * 175.05508 * 27 12 11 45 45 H 1.08993 * 109.60915 * 354.94812 * 28 9 7 46 46 H 1.09004 * 109.60752 * 115.28520 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2442 14 8 -0.5933 -5.6865 3.0129 15 6 0.8053 -7.0360 1.6741 16 8 -0.0138 -8.0895 2.1854 17 6 0.2706 -9.3506 1.7667 18 6 1.3276 -9.5598 0.8752 19 6 1.6368 -10.8101 0.4388 20 6 0.8863 -11.9108 0.8878 21 6 1.1788 -13.2162 0.4576 22 6 0.4319 -14.2590 0.9129 23 6 -0.6219 -14.0530 1.8015 24 6 -0.9344 -12.8031 2.2399 25 6 -0.1855 -11.7013 1.7915 26 6 -0.4756 -10.3978 2.2269 27 6 0.5346 -3.2873 2.4477 28 6 0.2345 -2.3367 1.2822 29 1 -0.4851 0.8400 -0.0004 30 1 1.0135 -4.0708 -0.8204 31 1 2.7054 -3.5085 -0.8010 32 1 3.0128 -4.2756 1.4848 33 1 2.2521 -5.6157 0.5910 34 1 0.7257 -7.0092 0.5872 35 1 1.8428 -7.2115 1.9581 36 1 1.9070 -8.7167 0.5291 37 1 2.4555 -10.9568 -0.2501 38 1 1.9920 -13.3912 -0.2312 39 1 0.6594 -15.2611 0.5808 40 1 -1.1991 -14.8978 2.1472 41 1 -1.7540 -12.6585 2.9281 42 1 -1.2861 -10.2242 2.9192 43 1 1.3249 -2.8662 3.0691 44 1 -0.3654 -3.4280 3.0461 45 1 0.0947 -1.3247 1.6622 46 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130145033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:41 Heat of formation + Delta-G solvation = -8.226583 kcal Electronic energy + Delta-G solvation = -28267.259575 eV Core-core repulsion = 24315.416411 eV Total energy + Delta-G solvation = -3951.843165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.77101 -41.05749 -39.72477 -38.39375 -36.44178 -35.71318 -33.66848 -33.11103 -32.36677 -30.80164 -30.57645 -29.21235 -28.13118 -25.48497 -24.56006 -24.42302 -23.54542 -22.90126 -22.22172 -20.33034 -19.52475 -18.81991 -18.20212 -18.01379 -17.47492 -17.28201 -16.94302 -16.67000 -16.23516 -15.87331 -15.65251 -15.48997 -15.24909 -15.12146 -15.00238 -14.57610 -14.46217 -14.20954 -14.04182 -13.95830 -13.88656 -13.39547 -13.16537 -12.78769 -12.71423 -12.60761 -12.47250 -12.27223 -12.09105 -12.03587 -11.88479 -11.70386 -11.65701 -11.59671 -10.86518 -10.78239 -10.62867 -9.90867 -9.35292 -8.68260 -8.65398 -7.89256 -5.38030 -0.38551 0.07570 1.12445 1.41908 1.47299 1.49560 1.50983 1.60069 2.05351 2.45795 2.53256 3.18276 3.26401 3.32715 3.57633 3.68675 3.82960 3.94510 4.03748 4.04384 4.08234 4.20994 4.23523 4.30095 4.35645 4.37714 4.44452 4.48656 4.51032 4.63809 4.76657 4.78418 4.85203 4.96143 5.04677 5.05648 5.23923 5.25447 5.28655 5.31371 5.41353 5.58703 5.61556 5.64144 5.65903 5.76905 6.07331 6.29077 6.34865 6.42280 7.03559 7.08757 7.78495 8.31412 9.16356 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.001936 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.783256 B =14462.015293 C =15039.523255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.259 4.259 8 H 0.079 0.921 9 N -0.609 5.609 10 C 0.123 3.877 11 C 0.094 3.906 12 N -0.596 5.596 13 C 0.506 3.494 14 O -0.581 6.581 15 C 0.049 3.951 16 O -0.321 6.321 17 C 0.118 3.882 18 C -0.198 4.198 19 C -0.058 4.058 20 C -0.104 4.104 21 C -0.097 4.097 22 C -0.136 4.136 23 C -0.106 4.106 24 C -0.136 4.136 25 C -0.031 4.031 26 C -0.177 4.177 27 C 0.104 3.896 28 C 0.169 3.831 29 H 0.250 0.750 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.070 0.930 46 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.117 -28.367 0.226 29.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.223 1.223 6 H -0.221 1.221 7 C -0.389 4.389 8 H 0.097 0.903 9 N -0.332 5.332 10 C -0.003 4.003 11 C -0.029 4.029 12 N -0.329 5.329 13 C 0.295 3.705 14 O -0.461 6.461 15 C -0.028 4.028 16 O -0.234 6.234 17 C 0.073 3.927 18 C -0.216 4.216 19 C -0.075 4.075 20 C -0.104 4.104 21 C -0.114 4.114 22 C -0.154 4.154 23 C -0.124 4.124 24 C -0.154 4.154 25 C -0.031 4.031 26 C -0.196 4.196 27 C -0.021 4.021 28 C 0.042 3.958 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 6.415 -28.138 0.737 28.869 hybrid contribution -0.369 1.679 0.047 1.720 sum 6.046 -26.459 0.784 27.152 Atomic orbital electron populations 1.70184 1.06931 1.25923 1.55389 1.25871 0.95935 1.01832 1.01196 0.85200 0.78912 0.79774 0.76477 1.18456 1.22312 1.22092 1.19614 0.93254 0.85501 1.40498 0.90325 1.44279 1.36217 1.03000 1.49750 1.21618 0.98827 0.85900 0.93976 1.22631 0.87650 1.02082 0.90572 1.48049 1.33302 1.05700 1.45847 1.20700 0.82453 0.86024 0.81333 1.90681 1.30251 1.87282 1.37899 1.22643 0.96424 0.83175 1.00599 1.86140 1.56298 1.13650 1.67327 1.18956 0.95354 0.83436 0.94961 1.21353 0.99054 1.00388 1.00854 1.21300 0.98309 0.90517 0.97393 1.18428 0.97056 0.95522 0.99426 1.21350 1.00036 0.90733 0.99313 1.21213 0.95806 1.00387 0.97970 1.21223 0.97360 0.97177 0.96600 1.21195 1.00375 0.92378 1.01450 1.17997 0.95868 0.92684 0.96585 1.20280 1.03214 0.90629 1.05500 1.22125 1.00067 0.83005 0.96862 1.20879 0.88270 0.97754 0.88881 0.94119 0.96436 0.89604 0.89760 0.86032 0.86314 0.85372 0.82424 0.81615 0.82919 0.83381 0.83709 0.84925 0.85713 0.91033 0.90986 0.91203 0.99031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 11.20 21.65 0.24 -54.49 16 2 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 3 Si 0.97 43.28 29.59 68.60 2.03 45.31 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.26 -13.27 9.57 84.03 0.80 -12.46 16 8 H 0.08 3.81 7.89 -2.91 -0.02 3.79 16 9 N -0.61 -28.57 2.96 -697.36 -2.06 -30.63 16 10 C 0.12 4.30 6.70 86.56 0.58 4.88 16 11 C 0.09 2.44 6.52 86.56 0.56 3.01 16 12 N -0.60 -19.92 2.95 -817.16 -2.41 -22.33 16 13 C 0.51 17.13 7.77 87.66 0.68 17.81 16 14 O -0.58 -25.37 15.91 16.02 0.25 -25.12 16 15 C 0.05 1.14 3.55 71.24 0.25 1.40 16 16 O -0.32 -9.38 9.64 -73.26 -0.71 -10.09 16 17 C 0.12 2.88 6.63 22.27 0.15 3.03 16 18 C -0.20 -3.45 8.93 22.14 0.20 -3.25 16 19 C -0.06 -0.86 9.76 22.32 0.22 -0.64 16 20 C -0.10 -1.87 5.74 -21.28 -0.12 -1.99 16 21 C -0.10 -1.25 9.77 22.33 0.22 -1.04 16 22 C -0.14 -1.61 9.95 22.05 0.22 -1.39 16 23 C -0.11 -1.43 9.95 22.04 0.22 -1.21 16 24 C -0.14 -2.42 9.77 22.34 0.22 -2.20 16 25 C -0.03 -0.67 5.74 -21.30 -0.12 -0.79 16 26 C -0.18 -4.40 9.68 22.42 0.22 -4.18 16 27 C 0.10 4.13 6.59 86.41 0.57 4.70 16 28 C 0.17 8.15 5.51 86.41 0.48 8.63 16 29 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 2.71 7.93 -2.39 -0.02 2.69 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.12 1.92 5.91 -2.39 -0.01 1.90 16 34 H 0.12 2.13 7.22 -2.38 -0.02 2.12 16 35 H 0.13 2.00 7.40 -2.39 -0.02 1.98 16 36 H 0.16 1.77 6.21 -2.91 -0.02 1.76 16 37 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 40 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 43 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.07 3.00 7.00 -2.39 -0.02 2.99 16 45 H 0.07 3.79 6.00 -2.39 -0.01 3.78 16 46 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 Total: -1.00 -76.24 375.40 4.10 -72.15 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.99 Total: 13.35 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 5.76 Total: 11.86 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -4.23 Total: -107.45 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.45 Total: -35.21 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -76.24 4.10 -72.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130145033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.919 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds