Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86804 * 120.00075 * 2 1 4 4 H 1.48493 * 109.47072 * 264.99561 * 3 2 1 5 5 H 1.48493 * 109.46954 * 24.99962 * 3 2 1 6 6 H 1.48500 * 109.47061 * 144.99553 * 3 2 1 7 7 C 1.37879 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 190.18789 * 7 2 1 9 9 C 1.50702 * 120.00097 * 10.18570 * 7 2 1 10 10 O 1.42902 * 113.38156 * 52.39700 * 9 7 2 11 11 C 1.53514 * 114.16849 * 185.47865 * 9 7 2 12 12 N 1.47483 * 87.92865 * 139.67190 * 11 9 7 13 13 C 1.46895 * 110.99746 * 221.29312 * 12 11 9 14 14 C 1.50703 * 109.47319 * 170.00343 * 13 12 11 15 15 C 1.38173 * 120.02272 * 260.02630 * 14 13 12 16 16 C 1.38247 * 120.05169 * 179.97438 * 15 14 13 17 17 C 1.38289 * 120.11150 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05495 * 359.68042 * 17 16 15 19 19 C 1.38705 * 120.02996 * 79.99669 * 14 13 12 20 20 O 1.35903 * 120.05799 * 0.02926 * 19 14 13 21 21 C 1.42892 * 117.00068 * 179.97438 * 20 19 14 22 22 C 1.50701 * 109.47079 * 179.97438 * 21 20 19 23 23 C 1.38231 * 119.61536 * 359.97438 * 22 21 20 24 24 C 1.38633 * 119.15842 * 180.02562 * 23 22 21 25 25 C 1.38675 * 118.42099 * 359.97438 * 24 23 22 26 26 C 1.38184 * 119.16130 * 0.27634 * 25 24 23 27 27 N 1.31856 * 119.61962 * 180.02562 * 22 21 20 28 28 C 1.47474 * 87.83613 * 332.98794 * 12 11 9 29 29 H 0.96999 * 120.00455 * 359.97438 * 1 2 3 30 30 H 0.96692 * 114.00205 * 317.08905 * 10 9 7 31 31 H 1.08998 * 113.48108 * 24.90271 * 11 9 7 32 32 H 1.09003 * 113.47267 * 254.43179 * 11 9 7 33 33 H 1.08998 * 109.47302 * 49.99979 * 13 12 11 34 34 H 1.09004 * 109.47334 * 290.00100 * 13 12 11 35 35 H 1.07993 * 119.97260 * 359.97438 * 15 14 13 36 36 H 1.07992 * 119.94261 * 179.97438 * 16 15 14 37 37 H 1.08000 * 119.97087 * 179.97438 * 17 16 15 38 38 H 1.08000 * 120.02362 * 180.32602 * 18 17 16 39 39 H 1.09000 * 109.47207 * 60.00368 * 21 20 19 40 40 H 1.08998 * 109.47454 * 299.99958 * 21 20 19 41 41 H 1.07994 * 120.41891 * 0.04754 * 23 22 21 42 42 H 1.07995 * 120.78996 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.41581 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.61231 * 179.70016 * 26 25 24 45 45 H 1.09001 * 113.47949 * 141.77814 * 28 12 11 46 46 H 1.09003 * 113.47539 * 272.24798 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6023 1.9853 -1.3947 5 1 1.3977 2.6808 0.5917 6 1 3.4897 1.4730 0.8031 7 6 2.0044 -1.1941 -0.0005 8 1 3.0717 -1.2015 0.1649 9 6 1.2688 -2.4888 -0.2319 10 8 0.4634 -2.4803 -1.4123 11 6 2.1394 -3.7433 -0.0738 12 7 0.9983 -4.3843 0.6061 13 6 1.4477 -5.1629 1.7679 14 6 0.2513 -5.5969 2.5749 15 6 -0.1022 -4.9021 3.7157 16 6 -1.1999 -5.2994 4.4562 17 6 -1.9465 -6.3931 4.0578 18 6 -1.6008 -7.0874 2.9148 19 6 -0.4963 -6.6939 2.1728 20 8 -0.1507 -7.3790 1.0511 21 6 -0.9656 -8.4983 0.6977 22 6 -0.4341 -9.1282 -0.5640 23 6 0.6833 -8.5925 -1.1766 24 6 1.1639 -9.1791 -2.3371 25 6 0.5000 -10.2879 -2.8400 26 6 -0.6141 -10.7643 -2.1756 27 7 -1.0408 -10.1832 -1.0713 28 6 0.5555 -3.0374 1.0118 29 1 -0.4851 0.8400 0.0004 30 1 -0.0374 -1.6633 -1.5409 31 1 3.0029 -3.5938 0.5742 32 1 2.3996 -4.2135 -1.0222 33 1 2.1000 -4.5475 2.3874 34 1 1.9942 -6.0421 1.4267 35 1 0.4796 -4.0479 4.0291 36 1 -1.4743 -4.7553 5.3478 37 1 -2.8034 -6.7018 4.6382 38 1 -2.1874 -7.9383 2.6012 39 1 -1.9900 -8.1643 0.5329 40 1 -0.9476 -9.2303 1.5051 41 1 1.1758 -7.7282 -0.7563 42 1 2.0351 -8.7826 -2.8372 43 1 0.8468 -10.7704 -3.7418 44 1 -1.1396 -11.6244 -2.5635 45 1 -0.5266 -2.9092 0.9836 46 1 0.9963 -2.6994 1.9496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190035709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = 21.576641 kcal Electronic energy + Delta-G solvation = -29187.213560 eV Core-core repulsion = 25236.662760 eV Total energy + Delta-G solvation = -3950.550800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57433 -39.93994 -38.89824 -37.27224 -34.45282 -32.84093 -32.24650 -32.13559 -31.72755 -29.78186 -27.99536 -27.12557 -25.64394 -24.76184 -23.65874 -22.96416 -22.59700 -21.48274 -20.69190 -18.59767 -17.96036 -17.25452 -17.16613 -16.09062 -16.05483 -15.84239 -15.54344 -15.27764 -15.03830 -14.88438 -14.28192 -14.17666 -13.96181 -13.87364 -13.58661 -13.41622 -13.22164 -12.53036 -12.46359 -12.33737 -11.97993 -11.89881 -11.71295 -11.58489 -11.33593 -11.13955 -11.09920 -10.91883 -10.65786 -10.48885 -10.19945 -9.96220 -9.93864 -9.60506 -9.18695 -9.07105 -8.77747 -8.63576 -8.15233 -7.92020 -7.78779 -6.24517 -4.33147 0.96115 1.17713 1.48616 1.62191 2.98460 3.21045 3.28523 3.30494 3.64227 3.91374 4.27292 4.29448 4.62761 4.75210 4.85413 4.92973 4.96230 4.98769 5.04058 5.11220 5.16888 5.20376 5.27508 5.42291 5.47497 5.52628 5.72757 5.74374 5.79644 5.92295 5.97788 6.02780 6.11792 6.14967 6.23194 6.36475 6.46318 6.49074 6.57262 6.60541 6.72520 6.73214 6.94966 7.20074 7.25620 7.39512 7.53605 7.75314 7.78914 7.98198 8.10983 8.68282 9.35826 9.49420 10.80867 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.003309 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.426429 B = 8459.884232 C =10423.277535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.246 3.754 10 O -0.565 6.565 11 C 0.004 3.996 12 N -0.459 5.459 13 C 0.064 3.936 14 C -0.094 4.094 15 C -0.074 4.074 16 C -0.157 4.157 17 C -0.087 4.087 18 C -0.214 4.214 19 C 0.150 3.850 20 O -0.296 6.296 21 C 0.114 3.886 22 C 0.124 3.876 23 C -0.139 4.139 24 C -0.075 4.075 25 C -0.176 4.176 26 C 0.097 3.903 27 N -0.483 5.483 28 C -0.007 4.007 29 H 0.268 0.732 30 H 0.381 0.619 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.157 0.843 45 H 0.067 0.933 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -17.661 2.905 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.205 3.795 10 O -0.372 6.372 11 C -0.125 4.125 12 N -0.182 5.182 13 C -0.064 4.064 14 C -0.095 4.095 15 C -0.092 4.092 16 C -0.175 4.175 17 C -0.106 4.106 18 C -0.232 4.232 19 C 0.104 3.896 20 O -0.209 6.209 21 C 0.038 3.962 22 C -0.013 4.013 23 C -0.158 4.158 24 C -0.101 4.101 25 C -0.195 4.195 26 C -0.060 4.060 27 N -0.194 5.194 28 C -0.136 4.136 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.174 0.826 45 H 0.085 0.915 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.987 -18.919 2.781 19.225 hybrid contribution 1.198 2.155 0.307 2.484 sum -0.788 -16.764 3.088 17.064 Atomic orbital electron populations 1.69795 1.05938 1.27641 1.49141 1.25060 0.94930 0.99497 0.93577 0.86534 0.79843 0.82684 0.78530 1.20237 1.21137 1.19824 1.21499 0.94984 0.90978 1.50523 0.91645 1.19350 0.87055 0.90751 0.82366 1.86079 1.63380 1.43868 1.43912 1.24064 0.93836 0.96122 0.98497 1.69097 1.20394 1.12384 1.16288 1.21438 0.92978 0.99063 0.92899 1.19161 0.99046 0.94670 0.96636 1.20956 0.96621 0.98072 0.93576 1.20986 0.96909 0.98444 1.01200 1.20842 0.98891 0.95168 0.95667 1.21182 0.99362 1.03905 0.98794 1.18641 0.93470 0.91837 0.85655 1.86051 1.52598 1.41443 1.40775 1.21059 0.94335 0.87282 0.93553 1.20640 0.92851 0.92231 0.95584 1.22090 0.96905 1.01068 0.95778 1.21691 0.99120 0.94324 0.94921 1.22160 0.97619 0.98100 1.01660 1.22614 0.94108 0.98554 0.90729 1.67152 1.31169 1.08778 1.12298 1.24503 1.01261 0.87394 1.00474 0.92165 0.76856 0.91898 0.91291 0.93936 0.90691 0.85535 0.86150 0.86181 0.85725 0.89851 0.90152 0.83172 0.84529 0.84789 0.82616 0.91467 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 11.82 55.43 0.66 -23.13 16 2 C 0.07 1.90 5.21 -17.82 -0.09 1.81 16 3 Si 0.90 20.24 29.55 -169.99 -5.02 15.22 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.34 8.64 -34.44 -0.30 -14.64 16 8 H 0.07 1.70 7.84 -52.48 -0.41 1.29 16 9 C 0.25 6.21 1.40 -91.24 -0.13 6.08 16 10 O -0.56 -15.15 13.56 -35.23 -0.48 -15.63 16 11 C 0.00 0.08 7.12 -7.55 -0.05 0.02 16 12 N -0.46 -9.68 6.40 -246.09 -1.58 -11.26 16 13 C 0.06 1.14 4.62 -4.98 -0.02 1.11 16 14 C -0.09 -1.56 5.06 -104.47 -0.53 -2.09 16 15 C -0.07 -1.12 9.56 -39.60 -0.38 -1.50 16 16 C -0.16 -2.09 10.04 -39.56 -0.40 -2.49 16 17 C -0.09 -1.10 10.04 -39.60 -0.40 -1.49 16 18 C -0.21 -2.86 9.04 -39.43 -0.36 -3.22 16 19 C 0.15 2.34 6.66 -39.22 -0.26 2.08 16 20 O -0.30 -4.53 7.82 -19.43 -0.15 -4.68 16 21 C 0.11 1.45 5.28 36.01 0.19 1.64 16 22 C 0.12 1.66 6.78 -82.58 -0.56 1.10 16 23 C -0.14 -1.83 9.41 -39.44 -0.37 -2.20 16 24 C -0.07 -0.81 10.18 -39.27 -0.40 -1.21 16 25 C -0.18 -1.65 10.11 -39.44 -0.40 -2.05 16 26 C 0.10 1.00 11.18 -17.55 -0.20 0.80 16 27 N -0.48 -6.18 10.27 -9.47 -0.10 -6.28 16 28 C -0.01 -0.17 6.63 -7.55 -0.05 -0.22 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.38 10.31 7.10 45.56 0.32 10.63 16 31 H 0.06 1.29 7.72 -51.93 -0.40 0.88 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.04 0.73 7.42 -51.93 -0.39 0.34 16 34 H 0.07 1.25 7.85 -51.93 -0.41 0.84 16 35 H 0.13 1.84 8.04 -52.49 -0.42 1.41 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 39 H 0.08 1.04 7.65 -51.93 -0.40 0.64 16 40 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 41 H 0.15 2.15 7.00 -52.49 -0.37 1.78 16 42 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 45 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 46 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -30.02 384.87 -11.26 -41.29 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -5.69 Total: 15.14 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -4.70 Total: -16.46 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: -1.02 Total: -40.67 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.63 Total: -20.31 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.02 -11.26 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190035709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.864 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds