Wall clock time and date at job start Sat Apr 11 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86804 * 120.00075 * 2 1 4 4 H 1.48493 * 109.47072 * 264.99561 * 3 2 1 5 5 H 1.48493 * 109.46954 * 24.99962 * 3 2 1 6 6 H 1.48500 * 109.47061 * 144.99553 * 3 2 1 7 7 C 1.37879 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 190.18789 * 7 2 1 9 9 C 1.50702 * 120.00097 * 10.18570 * 7 2 1 10 10 O 1.42902 * 113.38156 * 52.39700 * 9 7 2 11 11 C 1.53514 * 114.16849 * 185.47865 * 9 7 2 12 12 N 1.47483 * 87.92865 * 139.67190 * 11 9 7 13 13 C 1.46895 * 110.99746 * 221.29312 * 12 11 9 14 14 C 1.50703 * 109.47319 * 170.00343 * 13 12 11 15 15 C 1.38173 * 120.02272 * 260.02630 * 14 13 12 16 16 C 1.38247 * 120.05169 * 179.97438 * 15 14 13 17 17 C 1.38289 * 120.11150 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.05495 * 359.68042 * 17 16 15 19 19 C 1.38705 * 120.02996 * 79.99669 * 14 13 12 20 20 O 1.35903 * 120.05799 * 0.02926 * 19 14 13 21 21 C 1.42892 * 117.00068 * 179.97438 * 20 19 14 22 22 C 1.50701 * 109.47079 * 179.97438 * 21 20 19 23 23 C 1.38231 * 119.61536 * 359.97438 * 22 21 20 24 24 C 1.38633 * 119.15842 * 180.02562 * 23 22 21 25 25 C 1.38675 * 118.42099 * 359.97438 * 24 23 22 26 26 C 1.38184 * 119.16130 * 0.27634 * 25 24 23 27 27 N 1.31856 * 119.61962 * 180.02562 * 22 21 20 28 28 C 1.47474 * 87.83613 * 332.98794 * 12 11 9 29 29 H 0.96999 * 120.00455 * 359.97438 * 1 2 3 30 30 H 0.96692 * 114.00205 * 317.08905 * 10 9 7 31 31 H 1.08998 * 113.48108 * 24.90271 * 11 9 7 32 32 H 1.09003 * 113.47267 * 254.43179 * 11 9 7 33 33 H 1.08998 * 109.47302 * 49.99979 * 13 12 11 34 34 H 1.09004 * 109.47334 * 290.00100 * 13 12 11 35 35 H 1.07993 * 119.97260 * 359.97438 * 15 14 13 36 36 H 1.07992 * 119.94261 * 179.97438 * 16 15 14 37 37 H 1.08000 * 119.97087 * 179.97438 * 17 16 15 38 38 H 1.08000 * 120.02362 * 180.32602 * 18 17 16 39 39 H 1.09000 * 109.47207 * 60.00368 * 21 20 19 40 40 H 1.08998 * 109.47454 * 299.99958 * 21 20 19 41 41 H 1.07994 * 120.41891 * 0.04754 * 23 22 21 42 42 H 1.07995 * 120.78996 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.41581 * 180.02562 * 25 24 23 44 44 H 1.07998 * 119.61231 * 179.70016 * 26 25 24 45 45 H 1.09001 * 113.47949 * 141.77814 * 28 12 11 46 46 H 1.09003 * 113.47539 * 272.24798 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6023 1.9853 -1.3947 5 1 1.3977 2.6808 0.5917 6 1 3.4897 1.4730 0.8031 7 6 2.0044 -1.1941 -0.0005 8 1 3.0717 -1.2015 0.1649 9 6 1.2688 -2.4888 -0.2319 10 8 0.4634 -2.4803 -1.4123 11 6 2.1394 -3.7433 -0.0738 12 7 0.9983 -4.3843 0.6061 13 6 1.4477 -5.1629 1.7679 14 6 0.2513 -5.5969 2.5749 15 6 -0.1022 -4.9021 3.7157 16 6 -1.1999 -5.2994 4.4562 17 6 -1.9465 -6.3931 4.0578 18 6 -1.6008 -7.0874 2.9148 19 6 -0.4963 -6.6939 2.1728 20 8 -0.1507 -7.3790 1.0511 21 6 -0.9656 -8.4983 0.6977 22 6 -0.4341 -9.1282 -0.5640 23 6 0.6833 -8.5925 -1.1766 24 6 1.1639 -9.1791 -2.3371 25 6 0.5000 -10.2879 -2.8400 26 6 -0.6141 -10.7643 -2.1756 27 7 -1.0408 -10.1832 -1.0713 28 6 0.5555 -3.0374 1.0118 29 1 -0.4851 0.8400 0.0004 30 1 -0.0374 -1.6633 -1.5409 31 1 3.0029 -3.5938 0.5742 32 1 2.3996 -4.2135 -1.0222 33 1 2.1000 -4.5475 2.3874 34 1 1.9942 -6.0421 1.4267 35 1 0.4796 -4.0479 4.0291 36 1 -1.4743 -4.7553 5.3478 37 1 -2.8034 -6.7018 4.6382 38 1 -2.1874 -7.9383 2.6012 39 1 -1.9900 -8.1643 0.5329 40 1 -0.9476 -9.2303 1.5051 41 1 1.1758 -7.7282 -0.7563 42 1 2.0351 -8.7826 -2.8372 43 1 0.8468 -10.7704 -3.7418 44 1 -1.1396 -11.6244 -2.5635 45 1 -0.5266 -2.9092 0.9836 46 1 0.9963 -2.6994 1.9496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190035709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:12 Heat of formation + Delta-G solvation = 1.040299 kcal Electronic energy + Delta-G solvation = -29188.104083 eV Core-core repulsion = 25236.662760 eV Total energy + Delta-G solvation = -3951.441323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.63586 -41.08454 -40.44683 -38.37497 -36.33797 -34.19286 -33.74869 -33.30975 -32.86472 -30.87354 -29.58002 -28.13352 -27.37999 -26.59476 -24.55993 -24.32097 -23.75916 -22.49774 -21.96365 -20.49469 -19.27367 -18.94296 -18.12150 -17.19423 -17.09631 -17.01420 -16.83541 -16.63571 -16.61846 -16.17111 -15.87371 -15.65596 -15.33804 -14.89264 -14.78457 -14.73907 -14.12568 -14.01870 -13.89210 -13.62377 -13.54262 -13.43774 -13.23122 -12.85585 -12.66098 -12.62317 -12.53169 -12.28986 -12.23552 -12.15295 -11.85040 -11.57393 -11.03248 -10.84013 -10.76376 -10.48527 -10.07669 -9.94025 -9.82647 -9.56764 -9.06880 -8.23929 -6.40419 0.10307 0.31372 0.37459 0.52155 1.42127 1.45026 1.53432 1.97696 2.37882 2.77437 2.79527 2.96698 3.36016 3.39811 3.72539 3.80232 3.87200 3.95255 4.03044 4.06881 4.17323 4.23371 4.24410 4.25760 4.26836 4.35442 4.41359 4.49192 4.56318 4.62571 4.63753 4.69667 4.80846 4.87866 4.91603 5.08446 5.17143 5.22253 5.28088 5.39115 5.40848 5.42511 5.55283 5.65771 5.72144 5.74014 5.89037 5.97125 6.36282 6.47744 6.64225 6.91910 7.31526 7.38519 8.80790 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.003309 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.426429 B = 8459.884232 C =10423.277535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.563 4.563 8 H 0.065 0.935 9 C 0.221 3.779 10 O -0.576 6.576 11 C 0.013 3.987 12 N -0.462 5.462 13 C 0.070 3.930 14 C -0.124 4.124 15 C -0.088 4.088 16 C -0.160 4.160 17 C -0.081 4.081 18 C -0.216 4.216 19 C 0.134 3.866 20 O -0.312 6.312 21 C 0.115 3.885 22 C 0.105 3.895 23 C -0.163 4.163 24 C -0.081 4.081 25 C -0.166 4.166 26 C 0.092 3.908 27 N -0.502 5.502 28 C 0.012 3.988 29 H 0.271 0.729 30 H 0.376 0.624 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.154 0.846 43 H 0.171 0.829 44 H 0.190 0.810 45 H 0.037 0.963 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -18.966 3.148 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.170 4.170 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.083 0.917 9 C 0.180 3.820 10 O -0.383 6.383 11 C -0.116 4.116 12 N -0.184 5.184 13 C -0.057 4.057 14 C -0.125 4.125 15 C -0.106 4.106 16 C -0.178 4.178 17 C -0.099 4.099 18 C -0.234 4.234 19 C 0.088 3.912 20 O -0.226 6.226 21 C 0.039 3.961 22 C -0.032 4.032 23 C -0.183 4.183 24 C -0.107 4.107 25 C -0.185 4.185 26 C -0.065 4.065 27 N -0.213 5.213 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.165 0.835 39 H 0.101 0.899 40 H 0.114 0.886 41 H 0.147 0.853 42 H 0.172 0.828 43 H 0.188 0.812 44 H 0.207 0.793 45 H 0.056 0.944 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.131 -20.239 3.032 20.575 hybrid contribution 1.201 2.442 0.201 2.729 sum -0.930 -17.796 3.233 18.112 Atomic orbital electron populations 1.69888 1.07133 1.28480 1.49340 1.25781 0.95689 1.02530 0.93004 0.85516 0.78664 0.78617 0.78502 1.19966 1.20755 1.19243 1.21737 0.95129 0.91994 1.51238 0.91671 1.19691 0.87956 0.91935 0.82376 1.86066 1.63668 1.43569 1.45000 1.23975 0.94044 0.94530 0.99019 1.69005 1.20295 1.11228 1.17873 1.21380 0.93965 0.98575 0.91820 1.19177 0.99554 0.96140 0.97608 1.21096 0.97619 0.98171 0.93731 1.21315 0.96056 0.98784 1.01656 1.21287 0.99274 0.94150 0.95210 1.21504 0.98662 1.04533 0.98714 1.18846 0.94240 0.91945 0.86161 1.86028 1.53417 1.42243 1.40864 1.21148 0.93876 0.86902 0.94154 1.20717 0.93346 0.92985 0.96104 1.22040 0.97691 1.01291 0.97301 1.21991 0.99754 0.94770 0.94200 1.22551 0.96651 0.97040 1.02300 1.23289 0.94376 0.98989 0.89842 1.67190 1.31665 1.08854 1.13570 1.24168 0.99022 0.88917 0.99695 0.91975 0.77495 0.90524 0.91139 0.93643 0.90074 0.85693 0.83699 0.82720 0.83502 0.89899 0.88590 0.85287 0.82843 0.81169 0.79310 0.94386 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.56 11.82 21.45 0.25 -49.30 16 2 C 0.03 1.64 5.21 84.66 0.44 2.08 16 3 Si 0.96 41.53 29.55 68.60 2.03 43.55 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.56 -30.19 8.64 25.60 0.22 -29.97 16 8 H 0.07 3.41 7.84 -2.91 -0.02 3.38 16 9 C 0.22 11.45 1.40 -11.20 -0.02 11.44 16 10 O -0.58 -31.91 13.56 -148.98 -2.02 -33.93 16 11 C 0.01 0.58 7.12 83.57 0.60 1.18 16 12 N -0.46 -20.03 6.40 -932.89 -5.97 -26.00 16 13 C 0.07 2.55 4.62 85.56 0.40 2.95 16 14 C -0.12 -4.18 5.06 -19.77 -0.10 -4.28 16 15 C -0.09 -2.67 9.56 22.26 0.21 -2.46 16 16 C -0.16 -4.02 10.04 22.28 0.22 -3.79 16 17 C -0.08 -1.85 10.04 22.26 0.22 -1.63 16 18 C -0.22 -5.50 9.04 22.37 0.20 -5.30 16 19 C 0.13 4.21 6.66 22.50 0.15 4.36 16 20 O -0.31 -9.83 7.82 -92.46 -0.72 -10.55 16 21 C 0.11 2.96 5.28 71.24 0.38 3.33 16 22 C 0.10 2.83 6.78 42.55 0.29 3.12 16 23 C -0.16 -4.42 9.41 22.36 0.21 -4.21 16 24 C -0.08 -1.71 10.18 22.47 0.23 -1.48 16 25 C -0.17 -2.73 10.11 22.36 0.23 -2.50 16 26 C 0.09 1.69 11.18 84.67 0.95 2.64 16 27 N -0.50 -12.38 10.27 -183.88 -1.89 -14.27 16 28 C 0.01 0.56 6.63 83.57 0.55 1.12 16 29 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.38 21.10 7.10 -74.06 -0.53 20.58 16 31 H 0.08 3.15 7.72 -2.39 -0.02 3.13 16 32 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.05 1.59 7.42 -2.39 -0.02 1.57 16 34 H 0.08 2.79 7.85 -2.39 -0.02 2.77 16 35 H 0.13 3.70 8.04 -2.91 -0.02 3.68 16 36 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 37 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.15 2.98 6.30 -2.91 -0.02 2.97 16 39 H 0.08 2.08 7.65 -2.39 -0.02 2.06 16 40 H 0.10 2.08 7.68 -2.39 -0.02 2.06 16 41 H 0.13 3.96 7.00 -2.91 -0.02 3.94 16 42 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.05 2.58 7.66 -2.39 -0.02 2.56 16 Total: -1.00 -65.95 384.87 -2.47 -68.42 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: 0.47 Total: 45.50 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 5.38 Total: -23.42 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -7.61 Total: -89.58 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -2.74 Total: -44.48 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -65.95 -2.47 -68.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190035709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.462 kcal (2) G-P(sol) polarization free energy of solvation -65.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds