Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00657 * 2 1 4 4 H 1.48498 * 109.47527 * 270.00556 * 3 2 1 5 5 H 1.48503 * 109.46701 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.47342 * 149.99960 * 3 2 1 7 7 C 1.37880 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00430 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99850 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7 12 12 C 1.53000 * 109.46840 * 269.99975 * 11 10 9 13 13 C 1.53003 * 117.49371 * 243.61805 * 12 11 10 14 14 C 1.53001 * 117.49608 * 174.99880 * 12 11 10 15 15 C 1.34781 * 119.99832 * 269.99817 * 10 9 7 16 16 O 1.21279 * 120.00132 * 0.02562 * 15 10 9 17 17 C 1.50694 * 120.00287 * 180.02562 * 15 10 9 18 18 N 1.46496 * 109.47721 * 179.97438 * 17 15 10 19 19 C 1.36538 * 118.86588 * 269.73872 * 18 17 15 20 20 C 1.34289 * 122.41172 * 179.69687 * 19 18 17 21 21 C 1.46370 * 119.41448 * 0.55482 * 20 19 18 22 22 C 1.39577 * 122.03878 * 179.68992 * 21 20 19 23 23 C 1.36721 * 119.49355 * 180.02562 * 22 21 20 24 24 C 1.38903 * 120.88972 * 0.04643 * 23 22 21 25 25 C 1.36748 * 120.88436 * 359.97222 * 24 23 22 26 26 C 1.39468 * 119.50677 * 0.02562 * 25 24 23 27 27 C 1.34787 * 118.86056 * 89.99780 * 18 17 15 28 28 O 1.21794 * 120.38421 * 359.97438 * 27 18 17 29 29 H 0.96999 * 119.99319 * 359.97438 * 1 2 3 30 30 H 1.08992 * 109.46915 * 60.00270 * 9 7 2 31 31 H 1.08994 * 109.47284 * 299.99534 * 9 7 2 32 32 H 1.09002 * 109.47391 * 149.99645 * 11 10 9 33 33 H 1.09001 * 109.46813 * 29.99701 * 11 10 9 34 34 H 1.08995 * 115.55630 * 29.32490 * 12 11 10 35 35 H 1.08998 * 117.50656 * 0.02562 * 13 12 11 36 36 H 1.09001 * 117.49674 * 145.02590 * 13 12 11 37 37 H 1.09003 * 117.49710 * 214.97494 * 14 12 11 38 38 H 1.08998 * 117.50185 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.47004 * 300.00293 * 17 15 10 40 40 H 1.09005 * 109.47052 * 59.99843 * 17 15 10 41 41 H 1.07997 * 118.78804 * 359.96894 * 19 18 17 42 42 H 1.07997 * 120.29280 * 180.30721 * 20 19 18 43 43 H 1.08007 * 120.25345 * 0.02631 * 22 21 20 44 44 H 1.08004 * 119.55691 * 180.02562 * 23 22 21 45 45 H 1.07995 * 119.55616 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.24544 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9997 -2.5755 -0.0022 11 6 4.2434 -3.2653 -1.2715 12 6 2.9681 -3.9861 -1.7131 13 6 3.0146 -5.5128 -1.8024 14 6 2.9821 -4.6724 -3.0805 15 6 4.2248 -3.2116 1.1645 16 8 4.0227 -2.6407 2.2153 17 6 4.7275 -4.6322 1.1635 18 7 4.8913 -5.0934 2.5443 19 6 6.0939 -4.9068 3.1633 20 6 6.3203 -5.2961 4.4284 21 6 5.2516 -5.9564 5.1795 22 6 5.4290 -6.3889 6.4947 23 6 4.3951 -7.0005 7.1475 24 6 3.1721 -7.1977 6.5191 25 6 2.9699 -6.7846 5.2313 26 6 4.0065 -6.1577 4.5402 27 6 3.8512 -5.6920 3.1580 28 8 2.7947 -5.8446 2.5715 29 1 -0.4849 0.8401 0.0004 30 1 3.8751 -0.6806 0.8888 31 1 3.8745 -0.6803 -0.8911 32 1 5.0453 -3.9921 -1.1419 33 1 4.5312 -2.5381 -2.0307 34 1 2.0333 -3.5289 -1.3890 35 1 3.9534 -6.0038 -1.5462 36 1 2.1102 -6.0603 -1.5370 37 1 2.0563 -4.6669 -3.6559 38 1 3.8996 -4.6100 -3.6657 39 1 4.0096 -5.2713 0.6493 40 1 5.6876 -4.6775 0.6494 41 1 6.8909 -4.4247 2.6167 42 1 7.2837 -5.1270 4.8862 43 1 6.3759 -6.2415 6.9929 44 1 4.5311 -7.3352 8.1653 45 1 2.3701 -7.6836 7.0549 46 1 2.0147 -6.9428 4.7529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279078063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = -12.215642 kcal Electronic energy + Delta-G solvation = -29617.345021 eV Core-core repulsion = 25665.328877 eV Total energy + Delta-G solvation = -3952.016143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40568 -40.79004 -39.34632 -38.44402 -37.86941 -36.18140 -34.67999 -34.01215 -32.35985 -31.04738 -30.25758 -28.92350 -27.62296 -25.19123 -24.74968 -23.85720 -23.21590 -22.68923 -21.89910 -20.45881 -19.34938 -19.09452 -18.84676 -18.52084 -18.23468 -17.06419 -16.61922 -16.51949 -16.21017 -16.09682 -15.82154 -15.78052 -15.38688 -14.94191 -14.86040 -14.74542 -14.35813 -14.24507 -13.91611 -13.72343 -13.69482 -13.47942 -13.25284 -12.94303 -12.78649 -12.74384 -12.65146 -12.41994 -12.32176 -12.02213 -12.00815 -11.70861 -11.27829 -11.21390 -11.09518 -10.83951 -10.75787 -10.40749 -10.04598 -9.52818 -8.69651 -8.34845 -6.40111 -0.25034 -0.00838 1.20814 1.28245 1.33369 1.41269 1.44749 1.60071 1.92331 2.28757 2.29890 2.92587 2.99621 3.01975 3.38759 3.50758 3.67173 3.80900 3.81493 3.94081 4.01535 4.04986 4.07012 4.15253 4.21413 4.35610 4.36311 4.42160 4.63472 4.67016 4.70032 4.79019 4.84779 4.90012 4.91142 4.91882 5.02167 5.04950 5.26528 5.28556 5.41224 5.44314 5.46644 5.48685 5.55815 5.65220 5.95525 6.11333 6.21642 6.55066 6.62699 6.80907 7.16067 7.29324 8.82804 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.003511 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.587429 B = 7972.262370 C = 8921.782319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.247 1.247 5 H -0.285 1.285 6 H -0.252 1.252 7 C -0.531 4.531 8 H 0.021 0.979 9 C 0.226 3.774 10 N -0.591 5.591 11 C 0.142 3.858 12 C -0.198 4.198 13 C -0.177 4.177 14 C -0.150 4.150 15 C 0.489 3.511 16 O -0.586 6.586 17 C 0.083 3.917 18 N -0.504 5.504 19 C 0.104 3.896 20 C -0.200 4.200 21 C -0.006 4.006 22 C -0.122 4.122 23 C -0.079 4.079 24 C -0.140 4.140 25 C -0.079 4.079 26 C -0.186 4.186 27 C 0.528 3.472 28 O -0.576 6.576 29 H 0.267 0.733 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.176 0.824 41 H 0.197 0.803 42 H 0.191 0.809 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.151 0.849 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.642 -15.762 5.438 27.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.171 1.171 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.039 0.961 9 C 0.104 3.896 10 N -0.321 5.321 11 C 0.020 3.980 12 C -0.218 4.218 13 C -0.214 4.214 14 C -0.188 4.188 15 C 0.276 3.724 16 O -0.466 6.466 17 C -0.042 4.042 18 N -0.218 5.218 19 C -0.015 4.015 20 C -0.223 4.223 21 C -0.008 4.008 22 C -0.140 4.140 23 C -0.097 4.097 24 C -0.158 4.158 25 C -0.098 4.098 26 C -0.189 4.189 27 C 0.326 3.674 28 O -0.458 6.458 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.193 0.807 41 H 0.214 0.786 42 H 0.208 0.792 43 H 0.188 0.812 44 H 0.184 0.816 45 H 0.168 0.832 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 20.766 -15.421 5.561 26.457 hybrid contribution -1.644 1.042 -0.155 1.953 sum 19.122 -14.379 5.406 24.528 Atomic orbital electron populations 1.70091 1.08495 1.28213 1.52321 1.25960 0.95696 1.03649 0.93948 0.85644 0.79138 0.77782 0.79960 1.17138 1.21116 1.17536 1.21581 0.91875 0.92885 1.50632 0.96071 1.19370 0.92523 0.80309 0.97413 1.47928 1.63383 1.14530 1.06234 1.21461 0.95001 0.96967 0.84534 1.22778 1.00049 0.95533 1.03409 1.23112 1.03564 0.92156 1.02575 1.22988 1.04298 1.01835 0.89638 1.21394 0.78086 0.89263 0.83647 1.90672 1.54184 1.68886 1.32880 1.22002 1.07272 0.91779 0.83189 1.44728 1.12218 1.50569 1.14294 1.22151 0.86855 0.96906 0.95553 1.21924 1.00823 1.06362 0.93147 1.19543 0.91468 0.94583 0.95221 1.21333 1.01483 0.98886 0.92293 1.21527 0.91782 0.95115 1.01275 1.21213 0.99582 1.01334 0.93638 1.20905 0.97461 0.95695 0.95738 1.20007 0.97758 1.07769 0.93394 1.18756 0.82846 0.77997 0.87850 1.90847 1.27727 1.59344 1.67915 0.92439 0.96098 0.92592 0.86344 0.88148 0.92178 0.85844 0.91065 0.89772 0.85233 0.86445 0.80686 0.78646 0.79226 0.81205 0.81595 0.83155 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.04 13.96 21.45 0.30 -62.74 16 2 C 0.00 0.28 5.47 84.66 0.46 0.74 16 3 Si 0.95 45.54 27.47 68.60 1.88 47.43 16 4 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.25 -11.40 6.54 99.48 0.65 -10.75 16 7 C -0.53 -32.61 9.58 25.60 0.25 -32.36 16 8 H 0.02 1.49 6.90 -2.91 -0.02 1.47 16 9 C 0.23 11.12 4.27 85.63 0.37 11.49 16 10 N -0.59 -23.84 2.46 -826.16 -2.03 -25.87 16 11 C 0.14 4.02 5.54 86.38 0.48 4.50 16 12 C -0.20 -6.57 5.95 -10.79 -0.06 -6.63 16 13 C -0.18 -4.63 9.18 30.60 0.28 -4.35 16 14 C -0.15 -3.63 10.25 30.60 0.31 -3.32 16 15 C 0.49 20.27 7.73 87.65 0.68 20.95 16 16 O -0.59 -30.86 16.01 -3.02 -0.05 -30.91 16 17 C 0.08 2.40 4.31 85.63 0.37 2.77 16 18 N -0.50 -15.62 2.10 -648.69 -1.36 -16.98 16 19 C 0.10 2.21 10.16 83.06 0.84 3.06 16 20 C -0.20 -3.77 10.03 23.49 0.24 -3.53 16 21 C -0.01 -0.15 5.89 -20.06 -0.12 -0.27 16 22 C -0.12 -2.05 9.83 22.24 0.22 -1.83 16 23 C -0.08 -1.25 9.96 22.07 0.22 -1.03 16 24 C -0.14 -2.94 9.96 22.08 0.22 -2.72 16 25 C -0.08 -2.38 9.62 22.22 0.21 -2.17 16 26 C -0.19 -6.09 5.90 -20.00 -0.12 -6.21 16 27 C 0.53 20.54 7.61 86.45 0.66 21.20 16 28 O -0.58 -27.49 16.06 -4.65 -0.07 -27.57 16 29 H 0.27 16.41 8.31 -92.71 -0.77 15.64 16 30 H 0.02 1.11 6.48 -2.39 -0.02 1.10 16 31 H 0.06 2.43 7.32 -2.39 -0.02 2.41 16 32 H 0.12 2.07 6.17 -2.39 -0.01 2.05 16 33 H 0.10 2.50 7.89 -2.39 -0.02 2.48 16 34 H 0.06 2.84 6.57 -2.39 -0.02 2.82 16 35 H 0.12 2.34 7.87 -2.39 -0.02 2.32 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.12 3.69 6.05 -2.39 -0.01 3.67 16 40 H 0.18 2.65 7.22 -2.38 -0.02 2.64 16 41 H 0.20 2.33 7.97 -2.91 -0.02 2.31 16 42 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 46 H 0.11 3.72 7.80 -2.91 -0.02 3.69 16 Total: -1.00 -99.33 383.27 5.12 -94.22 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.94 Total: 22.15 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 5.50 Total: 0.28 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -3.09 Total: -105.59 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -0.12 Total: -58.48 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -99.33 5.12 -94.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279078063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.999 kcal (2) G-P(sol) polarization free energy of solvation -99.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds