Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86797 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46960 * 299.99917 * 3 2 1 6 6 H 1.48495 * 109.47552 * 59.99678 * 3 2 1 7 7 C 1.39894 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00346 * 175.56324 * 7 2 1 9 9 C 1.41157 * 119.99537 * 355.55422 * 7 2 1 10 10 C 1.40871 * 120.16358 * 214.78306 * 9 7 2 11 11 C 1.36370 * 119.83026 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.16982 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83360 * 179.97438 * 12 11 10 14 14 C 1.34774 * 119.99967 * 35.29289 * 13 12 11 15 15 O 1.21574 * 120.00298 * 355.71261 * 14 13 12 16 16 N 1.34786 * 119.99855 * 175.71242 * 14 13 12 17 17 C 1.46497 * 119.99785 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.46692 * 179.97438 * 17 16 14 19 19 H 1.09000 * 109.47419 * 304.99567 * 18 17 16 20 20 O 1.42910 * 109.47377 * 64.99896 * 18 17 16 21 21 C 1.53000 * 109.46918 * 184.99531 * 18 17 16 22 22 C 1.50699 * 109.47030 * 174.99947 * 21 18 17 23 23 C 1.38238 * 120.00243 * 90.00605 * 22 21 18 24 24 C 1.38234 * 120.00653 * 180.02562 * 23 22 21 25 25 C 1.38236 * 119.99647 * 359.97438 * 24 23 22 26 26 C 1.38235 * 119.99952 * 0.25848 * 25 24 23 27 27 C 1.38233 * 120.00258 * 359.48779 * 26 25 24 28 28 C 1.39481 * 120.33046 * 0.24793 * 12 11 10 29 29 C 1.36370 * 120.16801 * 359.44534 * 28 12 11 30 30 H 0.96990 * 120.00487 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.08373 * 0.02562 * 10 9 7 32 32 H 1.08000 * 119.91594 * 180.02562 * 11 10 9 33 33 H 0.97003 * 119.99985 * 215.29006 * 13 12 11 34 34 H 0.96999 * 119.99533 * 359.97438 * 16 14 13 35 35 H 1.08997 * 109.47701 * 59.99866 * 17 16 14 36 36 H 1.09005 * 109.46648 * 299.99266 * 17 16 14 37 37 H 0.96695 * 113.99744 * 59.99741 * 20 18 17 38 38 H 1.08996 * 109.47261 * 55.00181 * 21 18 17 39 39 H 1.08999 * 109.47392 * 294.99648 * 21 18 17 40 40 H 1.08010 * 119.99644 * 359.97438 * 23 22 21 41 41 H 1.07995 * 119.99980 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.99914 * 179.97438 * 25 24 23 43 43 H 1.08000 * 119.99804 * 179.72702 * 26 25 24 44 44 H 1.07999 * 120.00391 * 180.23490 * 27 26 25 45 45 H 1.07999 * 119.91400 * 179.70560 * 28 12 11 46 46 H 1.08004 * 120.08698 * 180.24891 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0084 -1.2115 -0.0005 8 1 3.0859 -1.2128 -0.0729 9 6 1.3058 -2.4321 0.0937 10 6 1.8651 -3.5185 0.7947 11 6 1.1806 -4.6948 0.8810 12 6 -0.0699 -4.8241 0.2770 13 7 -0.7625 -6.0286 0.3691 14 6 -0.6807 -6.7688 1.4924 15 8 0.0581 -6.4249 2.3945 16 7 -1.4181 -7.8903 1.6156 17 6 -1.3296 -8.6945 2.8369 18 6 -2.2609 -9.9028 2.7203 19 1 -3.2718 -9.5622 2.4965 20 8 -1.8030 -10.7577 1.6706 21 6 -2.2633 -10.6742 4.0416 22 6 -3.2717 -11.7917 3.9690 23 6 -2.8902 -13.0382 3.5090 24 6 -3.8152 -14.0632 3.4419 25 6 -5.1218 -13.8419 3.8353 26 6 -5.5045 -12.5941 4.2908 27 6 -4.5782 -11.5706 4.3628 28 6 -0.6277 -3.7547 -0.4236 29 6 0.0421 -2.5702 -0.5132 30 1 -0.4850 0.8399 0.0004 31 1 2.8335 -3.4200 1.2625 32 1 1.6079 -5.5285 1.4184 33 1 -1.3039 -6.3349 -0.3753 34 1 -2.0079 -8.1644 0.8960 35 1 -1.6264 -8.0889 3.6932 36 1 -0.3039 -9.0376 2.9724 37 1 -0.9080 -11.0989 1.8035 38 1 -2.5270 -9.9992 4.8558 39 1 -1.2721 -11.0904 4.2212 40 1 -1.8694 -13.2110 3.2012 41 1 -3.5171 -15.0369 3.0821 42 1 -5.8446 -14.6426 3.7825 43 1 -6.5263 -12.4200 4.5940 44 1 -4.8763 -10.5967 4.7223 45 1 -1.5943 -3.8638 -0.8928 46 1 -0.3928 -1.7418 -1.0527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000303985192.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -37.545748 kcal Electronic energy + Delta-G solvation = -27257.168406 eV Core-core repulsion = 23304.053866 eV Total energy + Delta-G solvation = -3953.114539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.09815 -39.65502 -38.05292 -37.20650 -34.51250 -34.06404 -33.24884 -32.78835 -31.20165 -29.92467 -29.48314 -28.62461 -26.28741 -24.61729 -22.91233 -22.51983 -21.62490 -21.39063 -20.79686 -19.99853 -18.02280 -17.44515 -17.21747 -16.80420 -16.51521 -16.11799 -15.40381 -15.30353 -15.16926 -14.78809 -14.63892 -14.49185 -13.88597 -13.73118 -13.67775 -13.34032 -13.10371 -12.84874 -12.64601 -12.55720 -12.18915 -12.06208 -11.66129 -11.55738 -11.32230 -11.31309 -11.28880 -11.12983 -10.93564 -10.69575 -10.50598 -10.05269 -9.50938 -9.42231 -9.22866 -9.21621 -8.98996 -8.93554 -8.81926 -7.49286 -6.78664 -6.56903 -4.29042 1.02187 1.09498 2.69261 2.98840 3.12144 3.12697 3.17847 3.20469 3.47208 3.71686 4.00758 4.02519 4.24462 4.46573 4.57794 4.65834 4.70752 4.75409 4.76564 4.80677 4.90601 5.07923 5.18915 5.33197 5.37828 5.55511 5.67995 5.69805 5.72095 5.78185 6.14114 6.19977 6.23883 6.28868 6.46559 6.58347 6.68705 6.81295 6.86596 7.09456 7.20192 7.27040 7.31691 7.45613 7.70173 7.90954 8.02064 8.14570 8.35783 8.51032 8.69032 8.97234 8.98249 9.13337 10.34467 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037041 B = 0.001577 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.739369 B =17748.114225 C =17901.628927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.087 4.087 12 C 0.024 3.976 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.580 6.580 16 N -0.748 5.748 17 C 0.110 3.890 18 C 0.103 3.897 19 H 0.106 0.894 20 O -0.553 6.553 21 C -0.112 4.112 22 C -0.075 4.075 23 C -0.104 4.104 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.140 4.140 30 H 0.276 0.724 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.392 0.608 34 H 0.396 0.604 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.375 0.625 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.829 -23.881 5.425 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.094 0.906 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.107 4.107 12 C -0.069 4.069 13 N -0.313 5.313 14 C 0.395 3.605 15 O -0.457 6.457 16 N -0.406 5.406 17 C -0.015 4.015 18 C 0.043 3.957 19 H 0.123 0.877 20 O -0.359 6.359 21 C -0.150 4.150 22 C -0.075 4.075 23 C -0.122 4.122 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.138 4.138 27 C -0.137 4.137 28 C -0.144 4.144 29 C -0.160 4.160 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.225 0.775 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.222 0.778 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.108 0.892 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.930 -23.261 6.042 26.003 hybrid contribution 0.139 0.390 -0.262 0.490 sum -9.790 -22.870 5.780 25.540 Atomic orbital electron populations 1.69773 1.07255 1.28481 1.38675 1.25863 0.94924 1.01101 0.92646 0.86162 0.80598 0.80958 0.78323 1.18618 1.20058 1.20058 1.19513 0.94715 0.90213 1.44838 0.90629 1.17726 0.92347 0.92048 0.88458 1.20805 1.01168 0.94938 1.05454 1.20419 0.92785 0.97932 0.99599 1.17085 0.93736 0.85009 1.11028 1.42110 1.51670 1.22097 1.15398 1.16024 0.81280 0.80055 0.83139 1.90904 1.42315 1.71648 1.40859 1.44963 1.48649 1.26354 1.20593 1.21822 1.00058 0.91861 0.87790 1.22156 0.98538 0.88132 0.86830 0.87659 1.86619 1.36336 1.66749 1.46148 1.21266 0.98941 0.96358 0.98475 1.19681 0.94408 0.94633 0.98750 1.21006 0.99668 0.92592 0.98931 1.21149 0.93606 0.99114 0.99980 1.21151 0.96326 0.97212 0.99701 1.21135 0.99441 0.93347 0.99894 1.21082 0.92921 0.99255 1.00400 1.20297 0.98400 0.93054 1.02686 1.21168 0.97295 0.95439 1.02076 0.91294 0.88656 0.87380 0.77494 0.77006 0.90832 0.91428 0.77752 0.89408 0.90063 0.86196 0.86203 0.86300 0.86166 0.86077 0.89158 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.50 10.60 55.55 0.59 -20.91 16 2 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.29 29.56 -169.99 -5.03 14.26 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 7 C -0.46 -12.51 9.02 -37.85 -0.34 -12.85 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 10 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.09 -2.14 8.61 -39.79 -0.34 -2.48 16 12 C 0.02 0.55 6.31 -83.57 -0.53 0.02 16 13 N -0.67 -12.01 5.31 -14.10 -0.07 -12.09 16 14 C 0.69 12.44 8.40 -86.91 -0.73 11.71 16 15 O -0.58 -12.90 13.76 5.30 0.07 -12.83 16 16 N -0.75 -9.34 5.51 -65.23 -0.36 -9.70 16 17 C 0.11 1.12 5.31 -4.04 -0.02 1.10 16 18 C 0.10 0.77 2.99 -26.73 -0.08 0.69 16 19 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 20 O -0.55 -4.36 12.78 -35.23 -0.45 -4.81 16 21 C -0.11 -0.71 5.03 -27.88 -0.14 -0.85 16 22 C -0.07 -0.57 4.97 -104.62 -0.52 -1.09 16 23 C -0.10 -0.78 9.40 -39.58 -0.37 -1.15 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.13 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -0.90 9.70 -39.58 -0.38 -1.29 16 28 C -0.12 -2.87 9.90 -39.79 -0.39 -3.27 16 29 C -0.14 -3.64 8.61 -39.26 -0.34 -3.98 16 30 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 31 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 32 H 0.11 2.64 6.22 -52.49 -0.33 2.31 16 33 H 0.39 5.56 8.83 -40.82 -0.36 5.20 16 34 H 0.40 4.04 8.49 -40.82 -0.35 3.69 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.38 1.94 9.04 45.56 0.41 2.35 16 38 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 46 H 0.13 3.53 6.13 -52.48 -0.32 3.21 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -33.24 389.80 -11.38 -44.63 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.56 Total: 14.79 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -6.45 Total: -19.21 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.15 Total: -42.69 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.38 Total: -17.64 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.24 -11.38 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303985192.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.081 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds