Wall clock time and date at job start Sat Apr 11 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46868 * 103.52243 * 3 2 1 5 5 S 1.81400 * 109.47145 * 60.00143 * 4 3 2 6 6 O 1.42109 * 110.54012 * 291.61993 * 5 4 3 7 7 O 1.42095 * 110.54467 * 68.37106 * 5 4 3 8 8 N 1.65597 * 104.45043 * 179.97438 * 5 4 3 9 9 C 1.46509 * 119.99761 * 89.99595 * 8 5 4 10 10 C 1.50699 * 109.47112 * 95.00272 * 9 8 5 11 11 H 1.08009 * 119.99618 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00372 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99559 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00329 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47185 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47532 * 119.99827 * 14 12 10 17 17 H 1.48503 * 109.47219 * 239.99830 * 14 12 10 18 18 C 1.46494 * 120.00229 * 269.99644 * 8 5 4 19 19 C 1.53004 * 109.46934 * 94.99965 * 18 8 5 20 20 C 1.53004 * 117.50009 * 243.74795 * 19 18 8 21 21 C 1.53003 * 117.49965 * 175.09249 * 19 18 8 22 22 C 1.52997 * 109.47101 * 223.52126 * 3 2 1 23 23 C 1.52996 * 109.46975 * 59.99961 * 22 3 2 24 24 C 1.53005 * 109.47245 * 60.00405 * 23 22 3 25 25 C 1.53000 * 109.46632 * 300.00027 * 24 23 22 26 26 C 1.52996 * 109.47518 * 59.99681 * 25 24 23 27 27 H 1.09001 * 109.47002 * 179.97438 * 4 3 2 28 28 H 1.08993 * 109.46955 * 300.00020 * 4 3 2 29 29 H 1.08998 * 109.46956 * 215.00113 * 9 8 5 30 30 H 1.08997 * 109.46866 * 335.00293 * 9 8 5 31 31 H 0.97003 * 119.99861 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47272 * 214.99583 * 18 8 5 33 33 H 1.08995 * 109.47300 * 335.00382 * 18 8 5 34 34 H 1.08997 * 115.55256 * 29.41451 * 19 18 8 35 35 H 1.09000 * 117.49579 * 0.02562 * 20 19 18 36 36 H 1.09001 * 117.50177 * 145.01697 * 20 19 18 37 37 H 1.09003 * 117.49771 * 214.98096 * 21 19 18 38 38 H 1.08998 * 117.49516 * 359.97438 * 21 19 18 39 39 H 1.09001 * 109.47375 * 180.02562 * 22 3 2 40 40 H 1.09000 * 109.47140 * 300.00349 * 22 3 2 41 41 H 1.09001 * 109.47367 * 299.99815 * 23 22 3 42 42 H 1.09004 * 109.47108 * 180.02562 * 23 22 3 43 43 H 1.08992 * 109.47199 * 180.02562 * 24 23 22 44 44 H 1.08992 * 109.46876 * 59.99547 * 24 23 22 45 45 H 1.09001 * 109.47194 * 299.99548 * 25 24 23 46 46 H 1.09000 * 109.46968 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.47452 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.46997 * 59.99746 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.3382 -1.4026 5 16 2.5124 1.9780 -1.8876 6 8 1.1049 1.9523 -2.0824 7 8 3.1245 2.9890 -1.0988 8 7 3.1310 2.2145 -3.4054 9 6 2.3691 1.7874 -4.5817 10 6 1.5744 2.9513 -5.1153 11 1 1.6315 3.9132 -4.6272 12 6 0.7753 2.7887 -6.2270 13 7 0.7071 1.6179 -6.8220 14 14 -0.2092 4.2316 -6.8888 15 1 0.0404 5.4290 -6.0466 16 1 0.2050 4.5141 -8.2866 17 1 -1.6561 3.8989 -6.8589 18 6 4.4400 2.8508 -3.5720 19 6 5.5187 1.7730 -3.6973 20 6 6.5854 1.7104 -2.6022 21 6 6.9470 2.2342 -3.9943 22 6 3.1175 1.0468 0.9933 23 6 2.6076 0.7093 2.3958 24 6 3.1183 -0.6737 2.8050 25 6 2.6088 -1.7199 1.8116 26 6 3.1186 -1.3823 0.4091 27 1 4.2078 0.3391 -1.4025 28 1 2.7548 -0.4071 -2.1102 29 1 3.0559 1.4335 -5.3505 30 1 1.6904 0.9817 -4.3020 31 1 0.1452 1.5036 -7.6044 32 1 4.4336 3.4648 -4.4725 33 1 4.6519 3.4779 -2.7060 34 1 5.1926 0.8303 -4.1366 35 1 6.5184 2.4367 -1.7923 36 1 6.9613 0.7265 -2.3214 37 1 7.5607 1.5947 -4.6288 38 1 7.1181 3.3054 -4.1008 39 1 4.2075 1.0477 0.9930 40 1 2.7537 2.0321 0.7018 41 1 1.5176 0.7089 2.3958 42 1 2.9703 1.4549 3.1034 43 1 2.7547 -0.9143 3.8039 44 1 4.2082 -0.6731 2.8050 45 1 1.5188 -1.7204 1.8116 46 1 2.9730 -2.7051 2.1029 47 1 2.7553 -2.1274 -0.2986 48 1 4.2086 -1.3818 0.4091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331925677.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:24 Heat of formation + Delta-G solvation = -33.597099 kcal Electronic energy + Delta-G solvation = -29400.602270 eV Core-core repulsion = 25583.102908 eV Total energy + Delta-G solvation = -3817.499362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.88756 -37.73609 -36.59919 -35.73574 -35.38603 -34.83376 -33.22113 -32.36772 -31.13457 -27.84617 -27.19417 -25.42760 -23.17656 -23.05481 -22.52958 -22.21186 -20.97289 -20.30406 -18.30177 -17.34187 -16.93599 -16.47423 -16.04006 -15.61075 -15.47031 -14.89959 -14.84565 -14.61993 -14.43196 -14.19836 -13.82865 -13.55970 -13.36084 -13.24401 -12.79795 -12.54623 -12.39643 -12.27407 -12.12826 -12.03281 -11.87949 -11.77210 -11.54026 -11.48612 -11.44062 -11.38119 -11.27179 -11.10298 -10.84845 -10.76192 -10.73450 -10.59232 -10.45119 -10.31798 -10.07157 -9.95323 -9.72191 -9.62529 -8.43570 -8.09829 -6.05510 -4.08362 0.71047 2.77158 2.79564 3.22258 3.32508 3.40606 3.46388 3.64399 3.91937 4.14445 4.32248 4.41215 4.45989 4.48680 4.61172 4.81101 4.89077 4.91627 4.93498 5.05717 5.10190 5.13120 5.21413 5.27763 5.30724 5.38854 5.50076 5.57132 5.58117 5.70086 5.71303 5.74921 5.78066 5.84333 5.86822 5.96691 5.97980 6.02539 6.06521 6.13368 6.19610 6.49490 6.56151 7.16435 7.34916 7.56330 7.60029 7.92417 8.20869 8.93950 9.56675 11.03422 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012063 B = 0.004432 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.509972 B = 6315.862396 C = 7725.337556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C 0.178 3.822 3 C 0.065 3.935 4 C -0.643 4.643 5 S 2.597 3.403 6 O -0.927 6.927 7 O -0.966 6.966 8 N -0.978 5.978 9 C 0.255 3.745 10 C -0.523 4.523 11 H 0.061 0.939 12 C 0.062 3.938 13 N -0.897 5.897 14 Si 0.895 3.105 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.282 1.282 18 C 0.149 3.851 19 C -0.174 4.174 20 C -0.193 4.193 21 C -0.173 4.173 22 C -0.140 4.140 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.099 4.099 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.263 0.737 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.834 -6.294 15.034 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.057 5.057 2 C -0.141 4.141 3 C 0.060 3.940 4 C -0.769 4.769 5 S 2.687 3.313 6 O -0.916 6.916 7 O -0.956 6.956 8 N -0.816 5.816 9 C 0.133 3.867 10 C -0.562 4.562 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.536 5.536 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.208 1.208 18 C 0.022 3.978 19 C -0.194 4.194 20 C -0.230 4.230 21 C -0.211 4.211 22 C -0.178 4.178 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.165 4.165 26 C -0.138 4.138 27 H 0.166 0.834 28 H 0.158 0.842 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.448 -5.799 15.335 19.996 hybrid contribution 0.212 -0.047 -0.890 0.917 sum 11.660 -5.846 14.444 19.462 Atomic orbital electron populations 1.81188 1.12220 1.05945 1.06341 1.28886 0.94862 0.95465 0.94928 1.17836 0.81899 1.00284 0.93956 1.31078 1.13665 1.28918 1.03284 1.05463 0.75293 0.76639 0.73882 1.93687 1.27742 1.86185 1.84027 1.93497 1.78799 1.53399 1.69916 1.57410 1.28221 1.72940 1.22981 1.19113 0.90216 0.95802 0.81578 1.21483 1.26058 0.96960 1.11733 0.92041 1.24911 0.96496 0.96040 0.96562 1.69921 1.39867 1.22626 1.21214 0.86478 0.80060 0.82666 0.78498 1.19599 1.20957 1.20836 1.20835 0.80133 0.92970 1.03855 1.23083 0.90721 1.02446 1.03172 1.23166 1.04457 1.02681 0.92741 1.22869 0.98001 1.01621 0.98562 1.22169 1.03156 0.98047 0.94432 1.21582 1.01164 0.97480 0.95846 1.21569 1.01094 0.94417 0.98674 1.21643 1.01230 0.99203 0.94417 1.21620 1.01870 0.92982 0.97349 0.83426 0.84198 0.94377 0.94563 0.92779 0.88977 0.89813 0.87121 0.88416 0.89087 0.88999 0.88658 0.88443 0.89200 0.91866 0.90605 0.91683 0.91264 0.91889 0.90991 0.90520 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -7.29 18.54 42.15 0.78 -6.51 16 2 C 0.18 2.87 9.54 -20.76 -0.20 2.68 16 3 C 0.07 0.79 0.50 -157.29 -0.08 0.71 16 4 C -0.64 -8.27 5.15 37.16 0.19 -8.08 16 5 S 2.60 48.72 4.56 -107.50 -0.49 48.23 16 6 O -0.93 -22.23 15.69 -57.54 -0.90 -23.13 16 7 O -0.97 -18.10 14.15 -57.54 -0.81 -18.91 16 8 N -0.98 -19.20 2.70 -115.66 -0.31 -19.51 16 9 C 0.25 6.18 5.01 -5.19 -0.03 6.16 16 10 C -0.52 -14.62 9.38 -34.44 -0.32 -14.94 16 11 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 14 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 18 C 0.15 2.43 5.94 -4.04 -0.02 2.40 16 19 C -0.17 -2.26 6.01 -90.61 -0.54 -2.80 16 20 C -0.19 -1.97 10.18 -26.69 -0.27 -2.25 16 21 C -0.17 -1.86 10.25 -26.69 -0.27 -2.14 16 22 C -0.14 -1.56 4.23 -26.73 -0.11 -1.67 16 23 C -0.12 -1.18 5.70 -26.73 -0.15 -1.33 16 24 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 25 C -0.13 -1.05 5.70 -26.73 -0.15 -1.20 16 26 C -0.10 -0.87 4.71 -26.73 -0.13 -0.99 16 27 H 0.15 1.37 8.14 -51.92 -0.42 0.95 16 28 H 0.14 1.71 8.14 -51.93 -0.42 1.29 16 29 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 30 H 0.04 0.94 7.61 -51.93 -0.40 0.55 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 33 H 0.08 1.29 6.55 -51.93 -0.34 0.95 16 34 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.22 5.46 -51.93 -0.28 0.94 16 41 H 0.06 0.70 7.23 -51.93 -0.38 0.33 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.63 7.23 -51.93 -0.38 0.25 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -34.65 393.75 -10.51 -45.16 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.07 Total: -0.07 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.35 Total: -22.85 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 1.21 Total: -51.46 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.72 Total: -42.04 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 48.72 SS G_CDS: -0.49 Total: 48.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.65 -10.51 -45.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331925677.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.560 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds