Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48498 * 109.46941 * 269.99243 * 3 2 1 5 5 H 1.48496 * 109.47022 * 29.99531 * 3 2 1 6 6 H 1.48501 * 109.47031 * 149.99970 * 3 2 1 7 7 C 1.37885 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00435 * 186.17817 * 7 2 1 9 9 C 1.50702 * 119.99506 * 6.17470 * 7 2 1 10 10 H 1.09000 * 109.46787 * 181.36933 * 9 7 2 11 11 C 1.52997 * 109.47145 * 301.36687 * 9 7 2 12 12 C 1.50701 * 109.47339 * 294.99953 * 11 9 7 13 13 O 1.21275 * 119.99814 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99965 * 180.02562 * 12 11 9 15 15 C 1.46500 * 120.00081 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47455 * 179.97438 * 15 14 12 17 17 N 1.46492 * 109.47440 * 179.97438 * 16 15 14 18 18 C 1.35766 * 119.62440 * 90.00175 * 17 16 15 19 19 C 1.35351 * 120.70268 * 180.27859 * 18 17 16 20 20 C 1.40190 * 119.94681 * 359.43506 * 19 18 17 21 21 C 1.36397 * 119.26789 * 0.57553 * 20 19 18 22 22 C 1.34661 * 119.62924 * 270.02471 * 17 16 15 23 23 O 1.22057 * 119.97945 * 359.97438 * 22 17 16 24 24 C 1.50698 * 109.47256 * 61.36966 * 9 7 2 25 25 C 1.38236 * 119.99941 * 91.36392 * 24 9 7 26 26 C 1.38240 * 119.99976 * 179.78982 * 25 24 9 27 27 C 1.38233 * 119.99674 * 0.44351 * 26 25 24 28 28 C 1.38236 * 120.00407 * 359.81054 * 27 26 25 29 29 C 1.38234 * 120.00161 * 271.64223 * 24 9 7 30 30 H 0.96993 * 120.00093 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46803 * 175.00274 * 11 9 7 32 32 H 1.09002 * 109.47063 * 55.00457 * 11 9 7 33 33 H 0.97000 * 119.99908 * 0.02562 * 14 12 11 34 34 H 1.09000 * 109.46774 * 59.99926 * 15 14 12 35 35 H 1.09002 * 109.47143 * 300.00047 * 15 14 12 36 36 H 1.09001 * 109.46731 * 59.99557 * 16 15 14 37 37 H 1.09002 * 109.47063 * 300.00194 * 16 15 14 38 38 H 1.08002 * 119.64981 * 359.97438 * 18 17 16 39 39 H 1.08004 * 120.02414 * 179.69949 * 19 18 17 40 40 H 1.08005 * 120.36730 * 180.32078 * 20 19 18 41 41 H 1.08004 * 120.35198 * 179.73852 * 21 20 19 42 42 H 1.08005 * 119.99988 * 0.02562 * 25 24 9 43 43 H 1.07989 * 120.00075 * 180.27654 * 26 25 24 44 44 H 1.08001 * 119.99666 * 179.83844 * 27 26 25 45 45 H 1.07994 * 120.00401 * 179.97438 * 28 27 26 46 46 H 1.08003 * 119.99562 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0798 -1.1967 0.1012 9 6 1.2576 -2.4955 -0.1393 10 1 1.9624 -3.3256 -0.0931 11 6 0.2418 -2.6251 0.9974 12 6 0.9699 -2.7227 2.3132 13 8 2.1820 -2.6912 2.3393 14 7 0.2741 -2.8450 3.4610 15 6 0.9819 -2.9394 4.7402 16 6 -0.0340 -3.0691 5.8769 17 7 0.6738 -3.1641 7.1559 18 6 0.9657 -2.0326 7.8471 19 6 1.6237 -2.0946 9.0282 20 6 2.0006 -3.3379 9.5550 21 6 1.7069 -4.4737 8.8590 22 6 1.0280 -4.3727 7.6326 23 8 0.7585 -5.3809 6.9997 24 6 0.5369 -2.5214 -1.4625 25 6 1.1567 -3.0554 -2.5768 26 6 0.4940 -3.0831 -3.7896 27 6 -0.7851 -2.5685 -3.8902 28 6 -1.4029 -2.0297 -2.7771 29 6 -0.7418 -2.0060 -1.5633 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3590 -3.5221 0.8472 32 1 -0.4079 -1.7498 1.0057 33 1 -0.6954 -2.8706 3.4400 34 1 1.5820 -2.0420 4.8904 35 1 1.6322 -3.8142 4.7320 36 1 -0.6345 -3.9664 5.7267 37 1 -0.6839 -2.1941 5.8849 38 1 0.6739 -1.0724 7.4478 39 1 1.8546 -1.1872 9.5665 40 1 2.5213 -3.3956 10.4994 41 1 1.9927 -5.4404 9.2465 42 1 2.1573 -3.4544 -2.4989 43 1 0.9765 -3.5043 -4.6591 44 1 -1.3018 -2.5878 -4.8383 45 1 -2.4020 -1.6273 -2.8558 46 1 -1.2244 -1.5851 -0.6936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356082488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -26.059998 kcal Electronic energy + Delta-G solvation = -28576.383374 eV Core-core repulsion = 24623.766894 eV Total energy + Delta-G solvation = -3952.616480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36068 -40.66848 -39.64318 -38.00541 -36.85831 -35.98345 -34.84432 -32.96939 -31.45410 -31.05771 -30.64726 -29.61982 -27.67616 -25.49550 -24.62722 -24.09731 -23.09097 -22.90802 -21.76339 -20.90947 -18.65379 -18.33019 -18.30549 -17.71841 -17.44483 -17.17303 -16.90697 -16.76581 -16.32638 -16.16820 -15.50506 -15.48156 -15.29176 -15.15258 -14.95953 -14.48794 -14.43038 -13.80172 -13.70933 -13.44630 -13.31198 -13.22867 -13.12649 -12.93581 -12.80639 -12.70070 -12.67258 -12.49778 -12.15605 -11.90554 -11.73241 -11.18112 -11.09168 -11.05352 -11.03685 -10.57564 -10.35322 -10.02122 -9.40777 -9.11864 -8.98831 -7.95746 -6.09586 -0.08788 0.87154 0.91773 0.98526 1.37332 1.40916 1.48712 1.49545 2.00550 2.46102 2.50123 2.69454 3.19823 3.35873 3.59861 3.66909 3.81052 3.98452 4.17316 4.19919 4.28348 4.32018 4.34652 4.41545 4.46607 4.51269 4.67107 4.71453 4.74781 4.83373 4.91429 5.07049 5.08305 5.14721 5.19272 5.38111 5.39499 5.51284 5.52908 5.65099 5.66495 5.68491 5.92416 5.95240 6.07603 6.10551 6.38051 6.41807 6.57644 6.73684 6.85387 6.96303 7.51973 7.57605 8.94826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.002584 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.964314 B =10831.414510 C =11897.140485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.038 3.962 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.272 1.272 6 H -0.290 1.290 7 C -0.495 4.495 8 H 0.025 0.975 9 C 0.088 3.912 10 H 0.008 0.992 11 C -0.129 4.129 12 C 0.522 3.478 13 O -0.575 6.575 14 N -0.726 5.726 15 C 0.119 3.881 16 C 0.090 3.910 17 N -0.492 5.492 18 C 0.127 3.873 19 C -0.229 4.229 20 C 0.008 3.992 21 C -0.283 4.283 22 C 0.491 3.509 23 O -0.611 6.611 24 C -0.056 4.056 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.148 4.148 28 C -0.147 4.147 29 C -0.088 4.088 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.198 0.802 39 H 0.183 0.817 40 H 0.169 0.831 41 H 0.145 0.855 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 0.018 15.138 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.759 3.241 4 H -0.210 1.210 5 H -0.197 1.197 6 H -0.216 1.216 7 C -0.533 4.533 8 H 0.043 0.957 9 C 0.069 3.931 10 H 0.027 0.973 11 C -0.169 4.169 12 C 0.311 3.689 13 O -0.453 6.453 14 N -0.381 5.381 15 C -0.006 4.006 16 C -0.032 4.032 17 N -0.202 5.202 18 C 0.001 3.999 19 C -0.251 4.251 20 C -0.014 4.014 21 C -0.304 4.304 22 C 0.296 3.704 23 O -0.498 6.498 24 C -0.057 4.057 25 C -0.171 4.171 26 C -0.159 4.159 27 C -0.166 4.166 28 C -0.165 4.165 29 C -0.106 4.106 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.159 0.841 38 H 0.215 0.785 39 H 0.200 0.800 40 H 0.187 0.813 41 H 0.163 0.837 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.619 -0.438 14.745 15.785 hybrid contribution 0.742 0.647 -0.191 1.003 sum -4.878 0.209 14.554 15.351 Atomic orbital electron populations 1.69595 1.05378 1.26526 1.50678 1.25195 0.95779 1.00187 0.95020 0.85983 0.78867 0.81536 0.77709 1.20992 1.19686 1.21600 1.20939 0.92390 0.91620 1.48342 0.95675 1.17519 0.92182 0.94764 0.88621 0.97333 1.21844 1.00289 1.04059 0.90667 1.21249 0.87678 0.73400 0.86551 1.90599 1.16518 1.50327 1.87884 1.45704 1.10818 1.76699 1.04913 1.21301 0.95191 1.00726 0.83424 1.22095 0.94213 1.06952 0.79944 1.45441 1.47386 1.07718 1.19630 1.22793 0.93687 0.90893 0.92507 1.21217 1.06160 1.00166 0.97543 1.21897 0.89839 0.91132 0.98546 1.22134 1.09754 1.02120 0.96424 1.17740 0.81858 0.82345 0.88438 1.90934 1.60278 1.35832 1.62804 1.20338 0.94128 0.94863 0.96378 1.21106 0.99509 1.02576 0.93903 1.21155 0.95899 1.01836 0.96964 1.21224 0.95592 1.00824 0.98940 1.21410 1.00491 1.01113 0.93462 1.21578 0.94460 0.95574 0.99026 0.92532 0.90912 0.84801 0.74874 0.91988 0.94922 0.88487 0.84060 0.78469 0.80002 0.81343 0.83737 0.88050 0.85055 0.84566 0.85375 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.18 7.74 21.45 0.17 -43.01 16 2 C 0.04 1.97 5.14 84.66 0.44 2.40 16 3 Si 0.93 43.33 29.54 68.60 2.03 45.36 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 7 C -0.50 -27.58 7.27 25.60 0.19 -27.39 16 8 H 0.02 1.52 7.82 -2.91 -0.02 1.50 16 9 C 0.09 4.43 1.98 -12.29 -0.02 4.41 16 10 H 0.01 0.44 7.89 -2.39 -0.02 0.42 16 11 C -0.13 -5.56 4.22 29.85 0.13 -5.43 16 12 C 0.52 22.68 7.58 87.66 0.66 23.34 16 13 O -0.58 -30.49 14.98 -3.02 -0.05 -30.54 16 14 N -0.73 -23.11 5.56 -463.07 -2.57 -25.69 16 15 C 0.12 3.50 6.00 86.38 0.52 4.01 16 16 C 0.09 1.82 5.45 86.38 0.47 2.29 16 17 N -0.49 -10.18 2.58 -650.99 -1.68 -11.86 16 18 C 0.13 1.57 10.28 83.42 0.86 2.43 16 19 C -0.23 -2.19 10.01 22.08 0.22 -1.97 16 20 C 0.01 0.09 10.09 22.31 0.23 0.32 16 21 C -0.28 -5.90 9.99 22.40 0.22 -5.68 16 22 C 0.49 13.65 7.41 84.82 0.63 14.28 16 23 O -0.61 -22.93 16.64 -5.50 -0.09 -23.02 16 24 C -0.06 -2.62 4.68 -19.87 -0.09 -2.71 16 25 C -0.15 -6.58 9.70 22.27 0.22 -6.36 16 26 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 27 C -0.15 -5.03 10.05 22.27 0.22 -4.81 16 28 C -0.15 -5.39 10.05 22.27 0.22 -5.17 16 29 C -0.09 -3.76 7.56 22.27 0.17 -3.59 16 30 H 0.26 12.40 8.31 -92.71 -0.77 11.63 16 31 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 32 H 0.13 5.91 4.65 -2.39 -0.01 5.90 16 33 H 0.41 9.99 8.47 -92.71 -0.79 9.20 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 2.21 7.39 -2.39 -0.02 2.19 16 37 H 0.14 1.64 8.01 -2.39 -0.02 1.62 16 38 H 0.20 1.00 8.04 -2.91 -0.02 0.98 16 39 H 0.18 0.46 8.06 -2.91 -0.02 0.43 16 40 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 42 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 43 H 0.13 3.91 8.06 -2.92 -0.02 3.89 16 44 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 46 H 0.14 6.14 4.97 -2.91 -0.01 6.13 16 Total: -1.00 -78.68 382.23 3.51 -75.17 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.21 Total: 28.09 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 5.49 Total: -14.51 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -4.09 Total: -80.56 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.14 Total: -53.55 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -78.68 3.51 -75.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356082488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.115 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds