Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86798 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47381 * 265.66745 * 3 2 1 5 5 H 1.48508 * 109.47085 * 145.66789 * 3 2 1 6 6 H 1.48498 * 109.47230 * 25.67172 * 3 2 1 7 7 C 1.39010 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00412 * 3.87144 * 7 2 1 9 9 N 1.36891 * 119.99785 * 183.87331 * 7 2 1 10 10 C 1.38209 * 125.62008 * 124.59529 * 9 7 2 11 11 C 1.46889 * 125.43926 * 359.93735 * 10 9 7 12 12 O 1.21670 * 120.00053 * 185.46981 * 11 10 9 13 13 N 1.34770 * 119.99922 * 5.46886 * 11 10 9 14 14 C 1.46503 * 120.00495 * 184.47721 * 13 11 10 15 15 H 1.08997 * 110.43269 * 331.40321 * 14 13 11 16 16 C 1.54812 * 110.48593 * 94.08497 * 14 13 11 17 17 C 1.54990 * 102.09161 * 97.79947 * 16 14 13 18 18 O 1.44378 * 103.48979 * 37.02383 * 17 16 14 19 19 C 1.43746 * 106.97550 * 319.93824 * 18 17 16 20 20 H 1.09002 * 109.87810 * 267.09017 * 19 18 17 21 21 C 1.53003 * 110.00300 * 146.01243 * 19 18 17 22 22 C 1.52992 * 117.50095 * 130.71878 * 21 19 18 23 23 C 1.52991 * 117.50167 * 62.09261 * 21 19 18 24 24 C 1.36124 * 109.12518 * 179.97438 * 10 9 7 25 25 C 1.41699 * 107.75278 * 359.97438 * 24 10 9 26 26 C 1.40020 * 133.35725 * 180.02562 * 25 24 10 27 27 C 1.36572 * 119.83396 * 179.97438 * 26 25 24 28 28 C 1.38856 * 120.60086 * 359.97438 * 27 26 25 29 29 C 1.37850 * 120.63243 * 359.97438 * 28 27 26 30 30 C 1.37844 * 125.61958 * 304.27908 * 9 7 2 31 31 H 0.97002 * 120.00613 * 5.00869 * 1 2 3 32 32 H 0.97000 * 119.99996 * 4.48109 * 13 11 10 33 33 H 1.08999 * 110.90450 * 215.99961 * 16 14 13 34 34 H 1.09002 * 110.90717 * 339.60398 * 16 14 13 35 35 H 1.08999 * 110.61803 * 278.52060 * 17 16 14 36 36 H 1.09000 * 110.61755 * 155.52011 * 17 16 14 37 37 H 1.09001 * 115.54507 * 276.42257 * 21 19 18 38 38 H 1.09001 * 117.49909 * 359.97438 * 22 21 19 39 39 H 1.09002 * 117.50448 * 145.01759 * 22 21 19 40 40 H 1.09003 * 117.49860 * 214.97769 * 23 21 19 41 41 H 1.09004 * 117.50062 * 359.97438 * 23 21 19 42 42 H 1.08003 * 126.12326 * 179.97438 * 24 10 9 43 43 H 1.08007 * 120.08081 * 359.92971 * 26 25 24 44 44 H 1.07999 * 119.70191 * 180.02562 * 27 26 25 45 45 H 1.07996 * 119.68778 * 179.97438 * 28 27 26 46 46 H 1.07992 * 120.09428 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.5865 1.9936 -1.3960 5 1 3.4962 1.4684 0.7897 6 1 1.4020 2.6773 0.6065 7 6 2.0085 -1.2038 0.0005 8 1 1.4704 -2.1382 -0.0622 9 7 3.3751 -1.2051 0.0806 10 6 4.1252 -1.8742 1.0292 11 6 3.5831 -2.6992 2.1169 12 8 4.3295 -3.1641 2.9578 13 7 2.2590 -2.9412 2.1834 14 6 1.7056 -3.6808 3.3205 15 1 2.4483 -4.3684 3.7250 16 6 1.2151 -2.7030 4.4159 17 6 -0.3048 -2.6231 4.1228 18 8 -0.6421 -3.9691 3.7240 19 6 0.4354 -4.4452 2.9002 20 1 0.2145 -4.2484 1.8510 21 6 0.6358 -5.9465 3.1167 22 6 0.7254 -6.8338 1.8736 23 6 -0.5255 -6.8739 2.7536 24 6 5.4466 -1.6459 0.7951 25 6 5.5451 -0.8040 -0.3404 26 6 6.6269 -0.2475 -1.0336 27 6 6.4008 0.5456 -2.1222 28 6 5.1058 0.8063 -2.5500 29 6 4.0246 0.2691 -1.8846 30 6 4.2300 -0.5442 -0.7752 31 1 -0.4851 0.8368 -0.0733 32 1 1.6723 -2.6257 1.4783 33 1 1.3987 -3.1093 5.4105 34 1 1.6848 -1.7258 4.3036 35 1 -0.5030 -1.9216 3.3125 36 1 -0.8544 -2.3397 5.0204 37 1 1.2485 -6.2198 3.9758 38 1 0.6411 -6.3481 0.9014 39 1 1.3973 -7.6912 1.9145 40 1 -0.6766 -7.7577 3.3735 41 1 -1.4326 -6.4145 2.3608 42 1 6.2721 -2.0366 1.3716 43 1 7.6376 -0.4446 -0.7079 44 1 7.2368 0.9734 -2.6555 45 1 4.9439 1.4360 -3.4124 46 1 3.0212 0.4772 -2.2252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611169333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = 13.877683 kcal Electronic energy + Delta-G solvation = -30245.577452 eV Core-core repulsion = 26294.692800 eV Total energy + Delta-G solvation = -3950.884652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.94734 -39.92617 -38.26230 -36.54586 -36.27508 -34.27534 -33.47683 -31.54233 -30.65138 -29.35930 -28.86386 -28.02763 -25.02329 -23.84116 -22.91708 -22.30455 -21.37453 -21.20054 -20.62114 -20.07974 -19.22587 -18.54842 -16.81799 -16.59888 -16.16056 -15.94735 -15.40075 -15.09446 -14.75961 -14.70810 -14.47894 -14.34523 -13.90786 -13.63467 -13.43768 -13.35591 -13.29227 -12.81345 -12.57773 -12.23075 -12.06936 -11.81944 -11.55987 -11.52382 -11.45270 -11.19344 -11.10777 -10.98363 -10.79724 -10.61395 -10.29472 -10.25584 -10.19075 -10.07781 -9.59382 -9.47729 -9.41279 -8.81835 -8.57367 -7.43945 -7.09356 -6.88866 -4.94525 1.48357 2.36834 2.75704 2.92839 3.06076 3.14649 3.54687 3.66772 3.80853 4.01569 4.10276 4.27834 4.40767 4.57677 4.62093 4.75632 4.96072 5.05155 5.14048 5.22895 5.39532 5.46584 5.48157 5.53391 5.58175 5.59118 5.67503 5.80266 5.89237 5.92261 6.01994 6.06981 6.13553 6.14057 6.15233 6.18887 6.25618 6.32982 6.49742 6.63988 6.71303 6.86354 7.08968 7.11649 7.16232 7.22052 7.46807 7.50883 7.58089 7.96465 8.15616 8.49907 8.80788 8.93662 10.02618 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.004096 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.866857 B = 6835.016687 C = 7691.382988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.090 3.910 3 Si 0.875 3.125 4 H -0.244 1.244 5 H -0.253 1.253 6 H -0.285 1.285 7 C -0.377 4.377 8 H 0.118 0.882 9 N -0.288 5.288 10 C 0.001 3.999 11 C 0.597 3.403 12 O -0.555 6.555 13 N -0.714 5.714 14 C 0.118 3.882 15 H 0.105 0.895 16 C -0.166 4.166 17 C 0.045 3.955 18 O -0.368 6.368 19 C 0.103 3.897 20 H 0.076 0.924 21 C -0.152 4.152 22 C -0.173 4.173 23 C -0.167 4.167 24 C -0.156 4.156 25 C -0.125 4.125 26 C -0.074 4.074 27 C -0.161 4.161 28 C -0.123 4.123 29 C -0.116 4.116 30 C 0.075 3.925 31 H 0.288 0.712 32 H 0.420 0.580 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.140 0.860 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -4.252 2.301 4.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.124 4.124 3 Si 0.700 3.300 4 H -0.169 1.169 5 H -0.176 1.176 6 H -0.211 1.211 7 C -0.503 4.503 8 H 0.135 0.865 9 N 0.045 4.955 10 C -0.113 4.113 11 C 0.386 3.614 12 O -0.434 6.434 13 N -0.374 5.374 14 C 0.011 3.989 15 H 0.123 0.877 16 C -0.204 4.204 17 C -0.032 4.032 18 O -0.286 6.286 19 C 0.045 3.955 20 H 0.094 0.906 21 C -0.170 4.170 22 C -0.210 4.210 23 C -0.204 4.204 24 C -0.184 4.184 25 C -0.130 4.130 26 C -0.093 4.093 27 C -0.180 4.180 28 C -0.143 4.143 29 C -0.136 4.136 30 C -0.038 4.038 31 H 0.099 0.901 32 H 0.267 0.733 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.158 0.842 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.514 -4.625 3.041 5.559 hybrid contribution 0.057 1.222 -0.446 1.302 sum 0.571 -3.403 2.595 4.318 Atomic orbital electron populations 1.69574 1.06202 1.30142 1.40368 1.25503 0.95407 0.99535 0.91982 0.86922 0.80506 0.81381 0.81167 1.16895 1.17644 1.21143 1.19008 0.77424 0.96121 1.57781 0.86532 1.40221 1.04840 1.33765 1.16695 1.20355 0.91643 1.05004 0.94288 1.17192 0.81882 0.78823 0.83549 1.90727 1.58900 1.52517 1.41225 1.46754 1.08667 1.56513 1.25433 1.22211 0.95672 0.93605 0.87375 0.87720 1.23539 0.96532 1.01165 0.99202 1.23611 0.94466 0.84782 1.00317 1.88869 1.41743 1.28947 1.69086 1.22468 0.86049 0.91669 0.95344 0.90594 1.22283 1.03504 0.91056 1.00202 1.22994 1.01053 1.01801 0.95117 1.22836 0.93133 1.01132 1.03266 1.20535 0.94283 1.03891 0.99664 1.18062 0.92589 1.03398 0.98986 1.20212 0.96866 0.97109 0.95078 1.20386 0.96290 1.02457 0.98865 1.20633 0.92172 1.01396 1.00087 1.20276 0.99512 0.98559 0.95216 1.18607 0.89718 1.01018 0.94435 0.90127 0.73307 0.90061 0.89600 0.91123 0.89126 0.87322 0.88503 0.88512 0.88877 0.88453 0.84245 0.86960 0.87096 0.86816 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.26 13.95 55.50 0.77 -19.48 16 2 C 0.09 2.16 5.49 -17.47 -0.10 2.07 16 3 Si 0.88 19.53 23.89 -169.99 -4.06 15.47 16 4 H -0.24 -5.12 5.46 56.52 0.31 -4.82 16 5 H -0.25 -6.11 6.86 56.52 0.39 -5.73 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.38 -8.95 8.19 -15.01 -0.12 -9.08 16 8 H 0.12 2.82 6.56 -52.49 -0.34 2.48 16 9 N -0.29 -6.71 2.36 -56.08 -0.13 -6.84 16 10 C 0.00 0.02 6.77 -82.25 -0.56 -0.54 16 11 C 0.60 12.83 7.77 -12.76 -0.10 12.73 16 12 O -0.55 -12.54 16.41 5.22 0.09 -12.45 16 13 N -0.71 -13.74 4.93 -53.57 -0.26 -14.00 16 14 C 0.12 1.94 3.13 -66.40 -0.21 1.73 16 15 H 0.10 1.76 6.79 -51.93 -0.35 1.40 16 16 C -0.17 -2.51 6.88 -24.73 -0.17 -2.68 16 17 C 0.04 0.66 7.72 38.21 0.29 0.96 16 18 O -0.37 -5.84 11.14 -35.23 -0.39 -6.23 16 19 C 0.10 1.58 3.38 -26.16 -0.09 1.49 16 20 H 0.08 1.26 7.48 -51.93 -0.39 0.87 16 21 C -0.15 -2.01 5.28 -90.63 -0.48 -2.49 16 22 C -0.17 -2.07 10.18 -26.74 -0.27 -2.34 16 23 C -0.17 -1.95 10.20 -26.74 -0.27 -2.23 16 24 C -0.16 -3.33 10.55 -39.02 -0.41 -3.74 16 25 C -0.13 -2.65 6.16 -106.89 -0.66 -3.31 16 26 C -0.07 -1.33 10.06 -39.52 -0.40 -1.72 16 27 C -0.16 -2.68 9.97 -39.95 -0.40 -3.08 16 28 C -0.12 -2.19 10.02 -39.49 -0.40 -2.58 16 29 C -0.12 -2.41 6.81 -39.41 -0.27 -2.68 16 30 C 0.08 1.70 4.91 -83.83 -0.41 1.29 16 31 H 0.29 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.42 8.52 4.33 -40.82 -0.18 8.35 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.41 8.06 -51.93 -0.42 1.00 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 1.36 7.91 -51.93 -0.41 0.95 16 38 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.14 2.70 8.06 -52.48 -0.42 2.27 16 43 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.12 2.56 5.94 -52.49 -0.31 2.25 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -26.72 370.11 -9.72 -36.44 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -6.29 Total: 17.73 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -5.01 Total: -16.21 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.38 Total: -40.33 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.31 Total: -18.68 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.06 Total: 15.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.72 -9.72 -36.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611169333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.314 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds