Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86798 * 119.99675 * 2 1 4 4 H 1.48500 * 109.47381 * 265.66745 * 3 2 1 5 5 H 1.48508 * 109.47085 * 145.66789 * 3 2 1 6 6 H 1.48498 * 109.47230 * 25.67172 * 3 2 1 7 7 C 1.39010 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00412 * 3.87144 * 7 2 1 9 9 N 1.36891 * 119.99785 * 183.87331 * 7 2 1 10 10 C 1.38209 * 125.62008 * 124.59529 * 9 7 2 11 11 C 1.46889 * 125.43926 * 359.93735 * 10 9 7 12 12 O 1.21670 * 120.00053 * 185.46981 * 11 10 9 13 13 N 1.34770 * 119.99922 * 5.46886 * 11 10 9 14 14 C 1.46503 * 120.00495 * 184.47721 * 13 11 10 15 15 H 1.08997 * 110.43269 * 331.40321 * 14 13 11 16 16 C 1.54812 * 110.48593 * 94.08497 * 14 13 11 17 17 C 1.54990 * 102.09161 * 97.79947 * 16 14 13 18 18 O 1.44378 * 103.48979 * 37.02383 * 17 16 14 19 19 C 1.43746 * 106.97550 * 319.93824 * 18 17 16 20 20 H 1.09002 * 109.87810 * 267.09017 * 19 18 17 21 21 C 1.53003 * 110.00300 * 146.01243 * 19 18 17 22 22 C 1.52992 * 117.50095 * 130.71878 * 21 19 18 23 23 C 1.52991 * 117.50167 * 62.09261 * 21 19 18 24 24 C 1.36124 * 109.12518 * 179.97438 * 10 9 7 25 25 C 1.41699 * 107.75278 * 359.97438 * 24 10 9 26 26 C 1.40020 * 133.35725 * 180.02562 * 25 24 10 27 27 C 1.36572 * 119.83396 * 179.97438 * 26 25 24 28 28 C 1.38856 * 120.60086 * 359.97438 * 27 26 25 29 29 C 1.37850 * 120.63243 * 359.97438 * 28 27 26 30 30 C 1.37844 * 125.61958 * 304.27908 * 9 7 2 31 31 H 0.97002 * 120.00613 * 5.00869 * 1 2 3 32 32 H 0.97000 * 119.99996 * 4.48109 * 13 11 10 33 33 H 1.08999 * 110.90450 * 215.99961 * 16 14 13 34 34 H 1.09002 * 110.90717 * 339.60398 * 16 14 13 35 35 H 1.08999 * 110.61803 * 278.52060 * 17 16 14 36 36 H 1.09000 * 110.61755 * 155.52011 * 17 16 14 37 37 H 1.09001 * 115.54507 * 276.42257 * 21 19 18 38 38 H 1.09001 * 117.49909 * 359.97438 * 22 21 19 39 39 H 1.09002 * 117.50448 * 145.01759 * 22 21 19 40 40 H 1.09003 * 117.49860 * 214.97769 * 23 21 19 41 41 H 1.09004 * 117.50062 * 359.97438 * 23 21 19 42 42 H 1.08003 * 126.12326 * 179.97438 * 24 10 9 43 43 H 1.08007 * 120.08081 * 359.92971 * 26 25 24 44 44 H 1.07999 * 119.70191 * 180.02562 * 27 26 25 45 45 H 1.07996 * 119.68778 * 179.97438 * 28 27 26 46 46 H 1.07992 * 120.09428 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.5865 1.9936 -1.3960 5 1 3.4962 1.4684 0.7897 6 1 1.4020 2.6773 0.6065 7 6 2.0085 -1.2038 0.0005 8 1 1.4704 -2.1382 -0.0622 9 7 3.3751 -1.2051 0.0806 10 6 4.1252 -1.8742 1.0292 11 6 3.5831 -2.6992 2.1169 12 8 4.3295 -3.1641 2.9578 13 7 2.2590 -2.9412 2.1834 14 6 1.7056 -3.6808 3.3205 15 1 2.4483 -4.3684 3.7250 16 6 1.2151 -2.7030 4.4159 17 6 -0.3048 -2.6231 4.1228 18 8 -0.6421 -3.9691 3.7240 19 6 0.4354 -4.4452 2.9002 20 1 0.2145 -4.2484 1.8510 21 6 0.6358 -5.9465 3.1167 22 6 0.7254 -6.8338 1.8736 23 6 -0.5255 -6.8739 2.7536 24 6 5.4466 -1.6459 0.7951 25 6 5.5451 -0.8040 -0.3404 26 6 6.6269 -0.2475 -1.0336 27 6 6.4008 0.5456 -2.1222 28 6 5.1058 0.8063 -2.5500 29 6 4.0246 0.2691 -1.8846 30 6 4.2300 -0.5442 -0.7752 31 1 -0.4851 0.8368 -0.0733 32 1 1.6723 -2.6257 1.4783 33 1 1.3987 -3.1093 5.4105 34 1 1.6848 -1.7258 4.3036 35 1 -0.5030 -1.9216 3.3125 36 1 -0.8544 -2.3397 5.0204 37 1 1.2485 -6.2198 3.9758 38 1 0.6411 -6.3481 0.9014 39 1 1.3973 -7.6912 1.9145 40 1 -0.6766 -7.7577 3.3735 41 1 -1.4326 -6.4145 2.3608 42 1 6.2721 -2.0366 1.3716 43 1 7.6376 -0.4446 -0.7079 44 1 7.2368 0.9734 -2.6555 45 1 4.9439 1.4360 -3.4124 46 1 3.0212 0.4772 -2.2252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611169333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = -0.180513 kcal Electronic energy + Delta-G solvation = -30246.187061 eV Core-core repulsion = 26294.692800 eV Total energy + Delta-G solvation = -3951.494261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.55716 -41.27759 -39.79650 -37.81529 -37.59691 -35.84466 -35.18939 -33.20035 -32.04747 -30.84760 -30.26731 -29.46287 -26.77037 -25.30069 -24.18821 -23.31420 -22.83582 -22.65309 -21.88263 -21.57030 -20.81001 -20.24459 -18.35297 -17.98529 -17.65502 -17.38636 -16.84194 -16.36976 -16.29465 -16.25858 -15.99305 -15.73258 -15.37771 -15.10409 -14.99235 -14.86334 -14.72107 -14.42135 -14.03202 -13.67041 -13.64954 -13.25484 -13.15364 -12.66677 -12.64046 -12.51281 -12.43823 -12.39192 -12.35451 -12.16656 -11.89936 -11.68538 -11.33798 -11.26997 -11.15594 -11.12446 -10.79794 -10.45166 -10.10686 -9.04845 -8.84077 -8.56146 -6.78132 -0.08107 0.87586 1.09049 1.15954 1.27145 1.34564 1.98675 2.10346 2.32487 2.44084 2.52458 2.62314 3.10075 3.14676 3.39073 3.49869 3.80898 3.83238 3.93098 3.99339 4.01955 4.09986 4.22776 4.26631 4.29991 4.35713 4.39863 4.56883 4.63588 4.70918 4.73507 4.75462 4.78936 4.85094 4.89990 4.98543 4.99967 5.07910 5.16855 5.22597 5.23205 5.38574 5.40096 5.64681 5.68442 5.77359 5.78202 5.93706 6.01052 6.36809 6.46943 6.71427 7.14128 7.20408 8.22024 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.004096 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.866857 B = 6835.016687 C = 7691.382988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.221 1.221 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.307 5.307 10 C -0.029 4.029 11 C 0.593 3.407 12 O -0.572 6.572 13 N -0.710 5.710 14 C 0.112 3.888 15 H 0.105 0.895 16 C -0.161 4.161 17 C 0.047 3.953 18 O -0.373 6.373 19 C 0.108 3.892 20 H 0.055 0.945 21 C -0.167 4.167 22 C -0.172 4.172 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.073 4.073 27 C -0.152 4.152 28 C -0.105 4.105 29 C -0.153 4.153 30 C 0.055 3.945 31 H 0.292 0.708 32 H 0.415 0.585 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.157 0.843 45 H 0.149 0.851 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -3.887 1.787 5.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.145 1.145 5 H -0.207 1.207 6 H -0.211 1.211 7 C -0.502 4.502 8 H 0.116 0.884 9 N 0.025 4.975 10 C -0.142 4.142 11 C 0.382 3.618 12 O -0.453 6.453 13 N -0.367 5.367 14 C 0.007 3.993 15 H 0.123 0.877 16 C -0.199 4.199 17 C -0.029 4.029 18 O -0.292 6.292 19 C 0.050 3.950 20 H 0.073 0.927 21 C -0.185 4.185 22 C -0.209 4.209 23 C -0.191 4.191 24 C -0.182 4.182 25 C -0.150 4.150 26 C -0.092 4.092 27 C -0.171 4.171 28 C -0.125 4.125 29 C -0.173 4.173 30 C -0.058 4.058 31 H 0.103 0.897 32 H 0.260 0.740 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.173 0.827 43 H 0.163 0.837 44 H 0.175 0.825 45 H 0.167 0.833 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.271 -4.264 2.513 5.446 hybrid contribution -0.352 1.110 -0.379 1.225 sum 1.919 -3.154 2.134 4.264 Atomic orbital electron populations 1.69614 1.06808 1.30768 1.41947 1.25881 0.95747 1.01068 0.91942 0.86355 0.78293 0.79548 0.81785 1.14462 1.20689 1.21081 1.18843 0.78152 0.95535 1.57635 0.88358 1.40217 1.04529 1.35076 1.17705 1.20648 0.92427 1.05909 0.95171 1.17221 0.82399 0.78807 0.83348 1.90690 1.59297 1.53520 1.41822 1.46756 1.07968 1.56099 1.25912 1.22419 0.96067 0.93879 0.86902 0.87717 1.23526 0.96473 1.00019 0.99917 1.23636 0.94638 0.83966 1.00650 1.88862 1.42066 1.29239 1.69000 1.22382 0.85252 0.93227 0.94169 0.92672 1.22297 1.05236 0.89596 1.01364 1.23062 1.01823 1.01865 0.94160 1.22904 0.92288 1.01124 1.02803 1.20835 0.94195 1.03387 0.99740 1.18439 0.93196 1.04050 0.99326 1.20674 0.97476 0.96185 0.94818 1.20915 0.97137 1.00996 0.98070 1.21169 0.91853 0.99623 0.99832 1.20427 1.00278 1.00519 0.96053 1.19049 0.90317 1.01314 0.95088 0.89731 0.74003 0.87557 0.91259 0.93543 0.86101 0.86205 0.89726 0.86666 0.86521 0.89280 0.82704 0.83653 0.82513 0.83309 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.41 13.95 21.67 0.30 -43.11 16 2 C 0.07 3.25 5.49 84.95 0.47 3.71 16 3 Si 0.92 40.98 23.89 68.60 1.64 42.62 16 4 H -0.22 -8.97 5.46 99.48 0.54 -8.43 16 5 H -0.28 -13.87 6.86 99.48 0.68 -13.19 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.38 -18.75 8.19 84.09 0.69 -18.06 16 8 H 0.10 5.14 6.56 -2.91 -0.02 5.12 16 9 N -0.31 -14.79 2.36 -331.34 -0.78 -15.57 16 10 C -0.03 -1.34 6.77 39.91 0.27 -1.07 16 11 C 0.59 26.59 7.77 86.51 0.67 27.26 16 12 O -0.57 -26.52 16.41 -4.25 -0.07 -26.59 16 13 N -0.71 -28.88 4.93 -441.62 -2.18 -31.06 16 14 C 0.11 3.83 3.13 45.98 0.14 3.97 16 15 H 0.10 3.57 6.79 -2.39 -0.02 3.56 16 16 C -0.16 -4.93 6.88 31.89 0.22 -4.71 16 17 C 0.05 1.41 7.72 72.66 0.56 1.98 16 18 O -0.37 -11.90 11.14 -148.98 -1.66 -13.56 16 19 C 0.11 3.42 3.38 30.96 0.10 3.53 16 20 H 0.06 1.97 7.48 -2.39 -0.02 1.95 16 21 C -0.17 -4.34 5.28 -10.80 -0.06 -4.40 16 22 C -0.17 -4.06 10.18 30.59 0.31 -3.75 16 23 C -0.15 -3.45 10.20 30.59 0.31 -3.14 16 24 C -0.15 -6.59 10.55 22.63 0.24 -6.35 16 25 C -0.15 -6.00 6.16 -21.34 -0.13 -6.14 16 26 C -0.07 -2.37 10.06 22.31 0.22 -2.14 16 27 C -0.15 -4.36 9.97 22.03 0.22 -4.14 16 28 C -0.11 -3.36 10.02 22.33 0.22 -3.14 16 29 C -0.15 -6.20 6.81 22.38 0.15 -6.05 16 30 C 0.05 2.47 4.91 39.06 0.19 2.66 16 31 H 0.29 13.73 8.31 -92.71 -0.77 12.96 16 32 H 0.41 18.11 4.33 -92.71 -0.40 17.71 16 33 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.07 2.36 8.06 -2.39 -0.02 2.35 16 35 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.12 2.86 7.91 -2.39 -0.02 2.84 16 38 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 39 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.16 5.93 8.06 -2.91 -0.02 5.90 16 43 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 44 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 45 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 46 H 0.11 4.66 5.94 -2.91 -0.02 4.64 16 Total: -1.00 -59.88 370.11 2.48 -57.39 By element: Atomic # 1 Polarization: 49.42 SS G_CDS: 0.42 Total: 49.85 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.81 Total: -19.97 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -2.66 Total: -89.74 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.73 Total: -40.15 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.64 Total: 42.62 kcal Total: -59.88 2.48 -57.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611169333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.211 kcal (2) G-P(sol) polarization free energy of solvation -59.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds