Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48496 * 109.46987 * 270.00371 * 3 2 1 5 5 H 1.48500 * 109.46872 * 30.00294 * 3 2 1 6 6 H 1.48497 * 109.46798 * 150.00377 * 3 2 1 7 7 C 1.37876 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99864 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47105 * 180.02562 * 9 7 2 11 11 C 1.46952 * 111.00252 * 170.00351 * 10 9 7 12 12 C 1.53049 * 109.36515 * 183.18906 * 11 10 9 13 13 N 1.46957 * 109.36568 * 301.59876 * 12 11 10 14 14 C 1.46902 * 111.00070 * 183.19042 * 13 12 11 15 15 C 1.52997 * 109.47026 * 75.75717 * 14 13 12 16 16 H 1.09003 * 109.47443 * 302.66491 * 15 14 13 17 17 O 1.42901 * 109.47509 * 62.66999 * 15 14 13 18 18 C 1.52999 * 109.46925 * 182.66697 * 15 14 13 19 19 O 1.42904 * 109.47361 * 174.99853 * 18 15 14 20 20 C 1.42899 * 114.00076 * 180.02562 * 19 18 15 21 21 C 1.50703 * 109.46896 * 180.02562 * 20 19 18 22 22 C 1.33389 * 125.20118 * 90.00253 * 21 20 19 23 23 C 1.38423 * 114.91947 * 179.97438 * 22 21 20 24 24 C 1.33393 * 114.92180 * 359.97438 * 23 22 21 25 25 S 1.75883 * 109.59181 * 359.76346 * 24 23 22 26 26 C 1.46959 * 110.88206 * 59.31831 * 13 12 11 27 27 C 1.46957 * 111.00070 * 293.80410 * 10 9 7 28 28 H 0.97000 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46853 * 60.00942 * 9 7 2 30 30 H 1.08995 * 109.47367 * 300.00282 * 9 7 2 31 31 H 1.09003 * 109.49098 * 63.21869 * 11 10 9 32 32 H 1.09001 * 109.48732 * 303.15157 * 11 10 9 33 33 H 1.09000 * 109.48860 * 181.62945 * 12 11 10 34 34 H 1.08997 * 109.49077 * 61.56391 * 12 11 10 35 35 H 1.09004 * 109.46683 * 195.75363 * 14 13 12 36 36 H 1.08992 * 109.47051 * 315.75359 * 14 13 12 37 37 H 0.96693 * 114.00093 * 59.99670 * 17 15 14 38 38 H 1.09002 * 109.47213 * 295.00079 * 18 15 14 39 39 H 1.08999 * 109.47262 * 54.99836 * 18 15 14 40 40 H 1.09007 * 109.47081 * 299.99648 * 20 19 18 41 41 H 1.08998 * 109.47557 * 59.99563 * 20 19 18 42 42 H 1.07999 * 122.54363 * 359.94976 * 22 21 20 43 43 H 1.08005 * 122.54023 * 180.02562 * 23 22 21 44 44 H 1.07998 * 125.20436 * 180.02562 * 24 23 22 45 45 H 1.08997 * 109.48229 * 60.64863 * 26 13 12 46 46 H 1.08993 * 109.48782 * 180.71667 * 26 13 12 47 47 H 1.09001 * 109.48993 * 296.78053 * 27 10 9 48 48 H 1.09002 * 109.49356 * 56.81537 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2376 12 6 2.5563 -6.0187 0.3093 13 7 3.3194 -6.0592 -0.9460 14 6 4.2740 -7.1758 -0.9460 15 6 3.5242 -8.4877 -1.1856 16 1 2.7585 -8.6137 -0.4201 17 8 2.9083 -8.4559 -2.4747 18 6 4.5086 -9.6571 -1.1195 19 8 3.7926 -10.8892 -1.2269 20 6 4.6235 -12.0507 -1.1755 21 6 3.7685 -13.2857 -1.2978 22 6 3.4427 -13.8849 -2.4441 23 6 2.6454 -15.0084 -2.3089 24 6 2.3243 -15.3218 -1.0527 25 16 3.0549 -14.1623 0.0497 26 6 4.0042 -4.7809 -1.1842 27 6 2.9687 -3.6562 -1.2558 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8904 30 1 0.6246 -2.5570 0.8896 31 1 0.8252 -5.0914 -0.5781 32 1 0.9733 -4.8434 1.1787 33 1 2.0484 -6.9717 0.4570 34 1 3.2354 -5.8353 1.1419 35 1 5.0076 -7.0266 -1.7383 36 1 4.7829 -7.2187 0.0169 37 1 3.5316 -8.3459 -3.2057 38 1 5.2218 -9.5786 -1.9400 39 1 5.0429 -9.6291 -0.1698 40 1 5.3393 -12.0220 -1.9971 41 1 5.1599 -12.0721 -0.2269 42 1 3.7753 -13.5209 -3.4050 43 1 2.3095 -15.5878 -3.1562 44 1 1.7130 -16.1618 -0.7574 45 1 4.6997 -4.5835 -0.3685 46 1 4.5517 -4.8315 -2.1253 47 1 2.2896 -3.8395 -2.0885 48 1 3.4763 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175576.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = -69.572061 kcal Electronic energy + Delta-G solvation = -26592.439539 eV Core-core repulsion = 22773.380185 eV Total energy + Delta-G solvation = -3819.059353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43435 -39.53589 -38.61777 -37.55917 -36.18869 -34.51444 -32.37314 -31.87282 -31.26608 -29.51467 -27.51028 -26.71111 -25.03167 -24.43749 -23.84502 -23.32515 -22.24909 -20.64243 -20.22259 -18.50228 -18.38053 -18.10683 -17.43488 -17.10163 -16.80379 -16.51634 -16.32593 -16.03843 -15.85422 -15.74362 -15.44174 -15.05961 -14.84346 -14.53435 -14.13174 -13.96792 -13.82818 -13.63045 -13.51764 -13.37265 -13.03237 -12.84402 -12.75031 -12.61399 -12.53666 -12.48241 -12.24717 -12.12725 -12.04464 -11.69678 -11.62293 -11.51553 -11.20516 -10.87363 -10.63461 -10.62698 -9.72114 -9.42396 -9.25612 -9.04079 -8.20983 -6.32062 -0.02964 0.68097 1.06655 1.41028 1.43031 1.54631 1.75620 2.40028 2.53618 3.09439 3.11284 3.29099 3.63989 3.76004 3.94939 3.98680 4.10463 4.15499 4.18278 4.22142 4.26072 4.33598 4.37897 4.39390 4.47642 4.51608 4.53443 4.65348 4.66558 4.70714 4.72479 4.83091 4.96548 5.01594 5.05704 5.10711 5.17482 5.22451 5.26638 5.33373 5.54626 5.62892 6.00127 6.03822 6.09772 6.20348 6.34647 6.60213 6.83806 7.00687 7.37838 8.90475 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.001609 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.711128 B =17394.494684 C =17700.264747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.542 5.542 11 C 0.054 3.946 12 C 0.072 3.928 13 N -0.542 5.542 14 C 0.032 3.968 15 C 0.121 3.879 16 H 0.082 0.918 17 O -0.563 6.563 18 C 0.035 3.965 19 O -0.398 6.398 20 C 0.131 3.869 21 C -0.202 4.202 22 C -0.123 4.123 23 C -0.148 4.148 24 C -0.210 4.210 25 S 0.089 5.911 26 C 0.073 3.927 27 C 0.067 3.933 28 H 0.264 0.736 29 H -0.043 1.043 30 H 0.002 0.998 31 H 0.015 0.985 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.382 0.618 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.153 0.847 43 H 0.162 0.838 44 H 0.186 0.814 45 H 0.040 0.960 46 H 0.098 0.902 47 H 0.011 0.989 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.995 -31.273 -3.947 34.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.267 5.267 11 C -0.075 4.075 12 C -0.056 4.056 13 N -0.267 5.267 14 C -0.096 4.096 15 C 0.061 3.939 16 H 0.100 0.900 17 O -0.369 6.369 18 C -0.042 4.042 19 O -0.318 6.318 20 C 0.054 3.946 21 C -0.319 4.319 22 C -0.155 4.155 23 C -0.178 4.178 24 C -0.345 4.345 25 S 0.352 5.648 26 C -0.055 4.055 27 C -0.062 4.062 28 H 0.073 0.927 29 H -0.025 1.025 30 H 0.020 0.980 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.230 0.770 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.170 0.830 43 H 0.179 0.821 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.117 0.883 47 H 0.029 0.971 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.117 -31.082 -2.023 33.797 hybrid contribution 0.239 0.981 -1.624 1.912 sum 13.356 -30.101 -3.647 33.132 Atomic orbital electron populations 1.70105 1.07888 1.27951 1.51678 1.25984 0.95772 1.03419 0.94697 0.85312 0.78509 0.77895 0.78459 1.19713 1.20785 1.18714 1.21441 0.93648 0.90872 1.50210 0.91653 1.19364 0.90172 0.89208 0.93168 1.62244 1.27129 1.02809 1.34513 1.22137 0.95812 0.89828 0.99673 1.22067 0.95564 0.97557 0.90432 1.61954 1.26707 1.03401 1.34654 1.22718 0.93962 0.90129 1.02819 1.21776 0.94859 0.90879 0.86406 0.90017 1.86652 1.38725 1.95856 1.15650 1.23282 0.94733 0.83632 1.02595 1.88026 1.35084 1.13696 1.94959 1.20843 0.90543 0.80922 1.02326 1.24393 1.08458 1.02471 0.96614 1.20482 0.99521 0.96423 0.99038 1.20489 1.00569 0.98588 0.98164 1.26026 1.07284 1.04992 0.96237 1.84370 1.47712 1.21895 1.10802 1.22113 0.94438 0.87406 1.01539 1.22005 0.95787 0.98745 0.89613 0.92678 1.02528 0.97965 0.96694 0.91309 0.89498 0.93904 0.88173 0.92372 0.76954 0.90444 0.90855 0.89568 0.91353 0.82981 0.82059 0.79671 0.94130 0.88333 0.97056 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.52 -30.37 8.47 25.60 0.22 -30.15 16 8 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 9 C 0.21 11.62 4.72 85.56 0.40 12.03 16 10 N -0.54 -24.71 4.70 -900.31 -4.23 -28.94 16 11 C 0.05 2.12 5.61 86.31 0.48 2.61 16 12 C 0.07 2.16 5.43 86.31 0.47 2.63 16 13 N -0.54 -14.85 4.55 -895.74 -4.08 -18.93 16 14 C 0.03 0.58 4.65 86.30 0.40 0.98 16 15 C 0.12 2.32 3.32 30.59 0.10 2.42 16 16 H 0.08 1.93 6.80 -2.39 -0.02 1.91 16 17 O -0.56 -13.12 13.22 -144.34 -1.91 -15.02 16 18 C 0.03 0.48 5.57 71.98 0.40 0.88 16 19 O -0.40 -7.72 10.29 -144.34 -1.49 -9.21 16 20 C 0.13 1.86 6.43 71.24 0.46 2.32 16 21 C -0.20 -3.35 6.14 24.59 0.15 -3.20 16 22 C -0.12 -1.85 10.05 21.22 0.21 -1.64 16 23 C -0.15 -1.94 10.18 21.22 0.22 -1.72 16 24 C -0.21 -2.74 11.23 66.72 0.75 -1.99 16 25 S 0.09 1.40 23.33 -56.49 -1.32 0.09 16 26 C 0.07 2.13 5.57 86.31 0.48 2.61 16 27 C 0.07 2.70 5.43 86.31 0.47 3.16 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H -0.04 -2.65 8.12 -2.39 -0.02 -2.67 16 30 H 0.00 0.13 8.03 -2.39 -0.02 0.12 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 2.66 8.07 -2.39 -0.02 2.65 16 33 H 0.09 2.33 6.75 -2.39 -0.02 2.32 16 34 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.38 7.85 -2.39 -0.02 1.36 16 36 H 0.06 0.94 8.00 -2.39 -0.02 0.93 16 37 H 0.38 5.85 9.04 -74.06 -0.67 5.18 16 38 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 2.33 8.00 -2.39 -0.02 2.31 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.07 3.02 6.79 -2.39 -0.02 3.00 16 Total: -1.00 -74.31 400.67 -4.76 -79.08 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.27 Total: 12.25 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 5.68 Total: -8.65 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -8.03 Total: -105.26 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -3.39 Total: -24.23 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -1.32 Total: 0.09 kcal Total: -74.31 -4.76 -79.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175576.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.503 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds