Wall clock time and date at job start Sat Apr 11 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31349 * 1 3 3 Si 1.86801 * 119.99634 * 2 1 4 4 H 1.48503 * 109.47267 * 89.99897 * 3 2 1 5 5 H 1.48499 * 109.47400 * 210.00115 * 3 2 1 6 6 H 1.48508 * 109.47265 * 330.00063 * 3 2 1 7 7 C 1.39007 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99824 * 155.23897 * 7 2 1 9 9 N 1.36893 * 119.99811 * 335.23484 * 7 2 1 10 10 C 1.38209 * 125.61475 * 147.67482 * 9 7 2 11 11 C 1.46886 * 125.44265 * 359.97438 * 10 9 7 12 12 O 1.21673 * 119.99918 * 353.98293 * 11 10 9 13 13 N 1.34774 * 120.00695 * 173.98417 * 11 10 9 14 14 C 1.47077 * 136.05187 * 4.82705 * 13 11 10 15 15 C 1.53242 * 88.07900 * 207.20850 * 14 13 11 16 16 C 1.52998 * 114.32296 * 220.47297 * 15 14 13 17 17 H 1.09003 * 110.46125 * 33.05767 * 16 15 14 18 18 C 1.54510 * 110.51007 * 155.66823 * 16 15 14 19 19 C 1.54482 * 104.06322 * 118.64296 * 18 16 15 20 20 O 1.44432 * 104.80442 * 23.97823 * 19 18 16 21 21 C 1.44644 * 105.36666 * 319.56824 * 20 19 18 22 22 C 1.47067 * 136.06307 * 185.20676 * 13 11 10 23 23 C 1.36126 * 109.12784 * 179.97438 * 10 9 7 24 24 C 1.41706 * 107.74284 * 359.97438 * 23 10 9 25 25 C 1.40020 * 133.35075 * 180.02562 * 24 23 10 26 26 C 1.36576 * 119.83382 * 179.97438 * 25 24 23 27 27 C 1.38851 * 120.59786 * 0.02562 * 26 25 24 28 28 C 1.37843 * 120.63635 * 359.95993 * 27 26 25 29 29 C 1.37832 * 125.62171 * 327.36796 * 9 7 2 30 30 H 0.97000 * 119.99501 * 173.22654 * 1 2 3 31 31 H 1.08991 * 113.46724 * 321.94343 * 14 13 11 32 32 H 1.08998 * 113.46075 * 92.38332 * 14 13 11 33 33 H 1.08996 * 114.19585 * 87.73503 * 15 14 13 34 34 H 1.09006 * 110.50835 * 237.28609 * 18 16 15 35 35 H 1.08996 * 110.50869 * 359.97438 * 18 16 15 36 36 H 1.08996 * 110.37224 * 142.80903 * 19 18 16 37 37 H 1.08996 * 110.37074 * 265.14772 * 19 18 16 38 38 H 1.09004 * 110.33894 * 281.58979 * 21 20 19 39 39 H 1.09000 * 110.50668 * 159.18614 * 21 20 19 40 40 H 1.08995 * 113.46925 * 267.62031 * 22 13 11 41 41 H 1.09001 * 113.46298 * 38.00210 * 22 13 11 42 42 H 1.07991 * 126.13143 * 180.02562 * 23 10 9 43 43 H 1.08005 * 120.08493 * 359.97438 * 25 24 23 44 44 H 1.07998 * 119.70011 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.68472 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.09573 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0466 1.4001 5 1 3.5449 1.4404 -0.7000 6 1 1.4447 2.6528 -0.7001 7 6 2.0086 -1.2038 0.0005 8 1 3.0142 -1.2469 -0.3912 9 7 1.4186 -2.3346 0.4977 10 6 1.6382 -3.6221 0.0458 11 6 2.5439 -3.9982 -1.0478 12 8 3.0917 -3.1353 -1.7079 13 7 2.7680 -5.2990 -1.3202 14 6 2.2516 -6.5871 -0.8332 15 6 3.5933 -7.2148 -1.2257 16 6 3.4776 -8.5979 -1.8695 17 1 2.5609 -8.6703 -2.4548 18 6 4.7100 -8.8875 -2.7553 19 6 5.3541 -10.1329 -2.1069 20 8 4.2758 -10.7773 -1.3941 21 6 3.5193 -9.7025 -0.7902 22 6 3.6414 -6.0552 -2.2302 23 6 0.8813 -4.4863 0.7761 24 6 0.1544 -3.7269 1.7263 25 6 -0.7657 -4.0651 2.7261 26 6 -1.3127 -3.0860 3.5055 27 6 -0.9653 -1.7551 3.3158 28 6 -0.0617 -1.3974 2.3382 29 6 0.5122 -2.3774 1.5351 30 1 -0.4849 -0.8342 -0.0991 31 1 2.0647 -6.6018 0.2405 32 1 1.4095 -6.9643 -1.4134 33 1 4.3549 -7.1640 -0.4477 34 1 4.4023 -9.1054 -3.7781 35 1 5.4013 -8.0451 -2.7350 36 1 5.7522 -10.7971 -2.8739 37 1 6.1421 -9.8357 -1.4149 38 1 4.0247 -9.3396 0.1048 39 1 2.5098 -10.0350 -0.5484 40 1 3.1733 -6.2894 -3.1863 41 1 4.6336 -5.6180 -2.3427 42 1 0.8425 -5.5586 0.6538 43 1 -1.0422 -5.0977 2.8807 44 1 -2.0218 -3.3493 4.2763 45 1 -1.4072 -0.9927 3.9403 46 1 0.2025 -0.3596 2.1985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619423137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:30 Heat of formation + Delta-G solvation = 22.177166 kcal Electronic energy + Delta-G solvation = -29363.710599 eV Core-core repulsion = 25413.185839 eV Total energy + Delta-G solvation = -3950.524759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.91162 -40.31351 -38.98791 -37.25733 -35.87423 -33.98923 -32.90366 -30.61560 -30.03316 -29.10087 -29.00038 -27.31819 -26.02281 -24.60114 -23.66824 -22.86638 -21.94773 -20.87507 -20.27346 -19.99287 -18.98379 -18.09229 -16.72938 -16.48244 -16.25228 -15.92705 -15.63654 -15.44179 -15.03949 -14.73846 -14.27422 -14.12850 -13.92291 -13.67369 -13.32367 -13.16068 -13.04043 -12.90696 -12.72574 -12.42692 -12.22329 -11.96657 -11.88608 -11.83118 -11.52696 -11.25202 -11.16008 -10.91747 -10.82199 -10.58386 -10.44754 -10.40374 -10.24258 -10.06405 -9.89242 -9.24121 -9.08386 -8.78106 -8.46654 -7.52286 -7.02609 -6.78163 -4.41265 1.70525 2.64100 2.94782 3.00162 3.15458 3.19900 3.36075 3.68386 3.90945 3.92853 4.11808 4.37290 4.42765 4.52597 4.69358 4.75764 4.78307 4.90156 4.94031 5.06607 5.11477 5.20624 5.27428 5.40258 5.43361 5.45919 5.49790 5.54370 5.59186 5.68271 5.72680 5.80692 5.87556 5.97312 6.10898 6.14460 6.25738 6.44059 6.49428 6.61286 6.78749 6.89970 7.00455 7.31948 7.44081 7.51858 7.74893 7.82146 7.86983 8.04677 8.20074 8.70985 8.86176 9.10787 10.08785 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.003106 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.996898 B = 9011.750457 C =10711.362352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.020 3.980 3 Si 1.083 2.917 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.403 4.403 8 H 0.117 0.883 9 N -0.230 5.230 10 C -0.031 4.031 11 C 0.616 3.384 12 O -0.530 6.530 13 N -0.645 5.645 14 C 0.103 3.897 15 C -0.121 4.121 16 C -0.109 4.109 17 H 0.089 0.911 18 C -0.151 4.151 19 C 0.044 3.956 20 O -0.379 6.379 21 C 0.049 3.951 22 C 0.117 3.883 23 C -0.212 4.212 24 C -0.120 4.120 25 C -0.090 4.090 26 C -0.154 4.154 27 C -0.148 4.148 28 C -0.070 4.070 29 C 0.037 3.963 30 H 0.290 0.710 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -15.313 -1.265 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.195 4.195 3 Si 0.905 3.095 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.135 0.865 9 N 0.111 4.889 10 C -0.149 4.149 11 C 0.410 3.590 12 O -0.407 6.407 13 N -0.383 5.383 14 C -0.020 4.020 15 C -0.140 4.140 16 C -0.128 4.128 17 H 0.108 0.892 18 C -0.189 4.189 19 C -0.033 4.033 20 O -0.298 6.298 21 C -0.027 4.027 22 C -0.006 4.006 23 C -0.239 4.239 24 C -0.125 4.125 25 C -0.109 4.109 26 C -0.173 4.173 27 C -0.169 4.169 28 C -0.089 4.089 29 C -0.077 4.077 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.149 0.851 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.598 -12.849 -1.675 14.115 hybrid contribution 0.014 -1.456 -0.262 1.480 sum 5.612 -14.305 -1.937 15.488 Atomic orbital electron populations 1.70586 1.07201 1.33134 1.33512 1.26935 0.95940 1.03224 0.93395 0.83320 0.75175 0.72945 0.78039 1.20025 1.20036 1.19991 1.21130 1.02171 0.86028 1.43848 0.86519 1.40154 1.26164 1.04309 1.18310 1.19366 1.07098 0.86355 1.02038 1.16726 0.80302 0.79391 0.82584 1.90791 1.50960 1.47469 1.51440 1.49087 1.43773 1.03577 1.41845 1.23134 0.95955 0.81298 1.01621 1.23065 0.99210 0.92446 0.99244 1.22477 0.99625 0.93894 0.96804 0.89218 1.23002 0.97251 0.98688 0.99946 1.23416 0.90373 0.94018 0.95448 1.89153 1.41936 1.29761 1.68930 1.23558 0.97183 0.86692 0.95289 1.22855 0.95520 0.88238 0.93973 1.20543 1.04065 0.97398 1.01883 1.17909 1.01923 0.92610 1.00021 1.20049 0.97388 0.97895 0.95611 1.20322 1.02514 0.93240 1.01197 1.20565 1.00530 0.95733 1.00044 1.20436 0.96190 0.98355 0.93952 1.18276 1.00528 0.94895 0.93972 0.89753 0.89414 0.89874 0.87528 0.90462 0.90009 0.89262 0.92266 0.91788 0.88783 0.90239 0.90689 0.85148 0.87762 0.87762 0.87361 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.39 11.39 55.50 0.63 -21.75 16 2 C 0.02 0.53 4.21 -17.47 -0.07 0.45 16 3 Si 1.08 22.83 29.99 -169.99 -5.10 17.74 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.40 -11.16 8.88 -15.01 -0.13 -11.30 16 8 H 0.12 3.35 6.78 -52.48 -0.36 3.00 16 9 N -0.23 -6.18 2.69 -56.08 -0.15 -6.33 16 10 C -0.03 -0.76 6.77 -82.25 -0.56 -1.32 16 11 C 0.62 14.02 8.02 -12.76 -0.10 13.92 16 12 O -0.53 -13.91 15.69 5.21 0.08 -13.83 16 13 N -0.65 -10.77 3.69 -186.83 -0.69 -11.46 16 14 C 0.10 1.22 6.63 -8.62 -0.06 1.16 16 15 C -0.12 -1.12 3.30 -90.24 -0.30 -1.41 16 16 C -0.11 -0.81 2.95 -89.05 -0.26 -1.07 16 17 H 0.09 0.64 7.94 -51.93 -0.41 0.23 16 18 C -0.15 -1.03 6.46 -25.16 -0.16 -1.19 16 19 C 0.04 0.32 7.64 37.94 0.29 0.61 16 20 O -0.38 -3.72 11.65 -35.23 -0.41 -4.13 16 21 C 0.05 0.39 7.21 37.94 0.27 0.66 16 22 C 0.12 1.42 7.53 -8.50 -0.06 1.36 16 23 C -0.21 -4.56 9.93 -39.02 -0.39 -4.95 16 24 C -0.12 -2.76 6.16 -106.89 -0.66 -3.41 16 25 C -0.09 -1.80 10.06 -39.51 -0.40 -2.19 16 26 C -0.15 -2.93 9.97 -39.95 -0.40 -3.32 16 27 C -0.15 -3.06 10.02 -39.50 -0.40 -3.45 16 28 C -0.07 -1.68 8.30 -39.41 -0.33 -2.01 16 29 C 0.04 0.96 5.56 -83.84 -0.47 0.49 16 30 H 0.29 8.37 6.97 -40.82 -0.28 8.09 16 31 H 0.09 1.04 6.08 -51.93 -0.32 0.73 16 32 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 33 H 0.11 0.99 7.96 -51.93 -0.41 0.57 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.53 7.40 -51.93 -0.38 0.15 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.48 7.75 -51.93 -0.40 0.08 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.13 2.28 5.02 -52.49 -0.26 2.01 16 43 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.11 1.94 8.06 -52.48 -0.42 1.51 16 46 H 0.12 3.14 6.08 -52.49 -0.32 2.82 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -32.91 368.92 -10.42 -43.33 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.16 Total: 7.86 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -4.18 Total: -16.98 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.21 Total: -39.54 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.33 Total: -17.96 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.10 Total: 17.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.91 -10.42 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619423137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.504 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds